Wall clock time and date at job start Tue Mar 31 2020 09:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35980 * 117.00066 * 2 1 4 4 C 1.38713 * 119.97341 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.11996 * 180.02562 * 4 3 2 6 6 C 1.38513 * 120.06639 * 0.02562 * 5 4 3 7 7 O 1.36059 * 120.02359 * 179.97438 * 6 5 4 8 8 C 1.42902 * 117.00267 * 0.02562 * 7 6 5 9 9 C 1.39261 * 119.94758 * 359.97438 * 6 5 4 10 10 N 1.40160 * 120.05687 * 179.97438 * 9 6 5 11 11 C 1.34777 * 119.99853 * 214.92757 * 10 9 6 12 12 O 1.21595 * 120.00058 * 355.59099 * 11 10 9 13 13 N 1.34775 * 119.99585 * 175.59055 * 11 10 9 14 14 C 1.46496 * 120.00243 * 0.02562 * 13 11 10 15 15 C 1.46496 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.09001 * 109.47419 * 0.02562 * 15 13 11 17 17 C 1.53001 * 109.47574 * 240.00516 * 15 13 11 18 18 C 1.50697 * 109.47419 * 120.00139 * 15 13 11 19 19 H 1.08000 * 119.99410 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00568 * 179.97438 * 18 15 13 21 21 N 1.31515 * 119.99900 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 120.00100 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47290 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47062 * 120.00319 * 22 20 18 25 25 H 1.48500 * 109.46935 * 240.00128 * 22 20 18 26 26 C 1.38635 * 119.97441 * 180.27680 * 3 2 1 27 27 H 1.08996 * 109.47206 * 300.00200 * 1 2 3 28 28 H 1.09002 * 109.47490 * 60.00230 * 1 2 3 29 29 H 1.09004 * 109.47470 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.94058 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.96288 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47231 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.47328 * 300.00157 * 8 7 6 34 34 H 1.09001 * 109.46808 * 60.00029 * 8 7 6 35 35 H 0.97001 * 119.99814 * 34.93355 * 10 9 6 36 36 H 1.08996 * 109.47238 * 270.00241 * 14 13 11 37 37 H 1.09000 * 109.47473 * 29.99850 * 14 13 11 38 38 H 1.08999 * 109.47248 * 149.99619 * 14 13 11 39 39 H 1.09001 * 109.46768 * 299.99544 * 17 15 13 40 40 H 1.09000 * 109.47577 * 59.99698 * 17 15 13 41 41 H 1.08995 * 109.47392 * 180.02562 * 17 15 13 42 42 H 0.97000 * 120.00134 * 179.97438 * 21 20 18 43 43 H 1.07992 * 120.03667 * 359.97381 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2902 2.3746 -0.0005 5 6 1.9147 3.6079 -0.0011 6 6 3.2977 3.6855 -0.0016 7 8 3.9114 4.8999 -0.0027 8 6 3.0677 6.0532 -0.0026 9 6 4.0594 2.5197 -0.0011 10 7 5.4589 2.5956 -0.0022 11 6 6.1831 1.6759 -0.6701 12 8 5.6275 0.7355 -1.2045 13 7 7.5231 1.7985 -0.7457 14 6 8.1926 2.9312 -0.1014 15 6 8.3104 0.7986 -1.4712 16 1 7.6447 0.0378 -1.8789 17 6 9.3090 0.1435 -0.5149 18 6 9.0572 1.4670 -2.5966 19 1 8.9557 2.5305 -2.7552 20 6 9.8706 0.7212 -3.4231 21 7 9.9945 -0.5737 -3.2297 22 14 10.7956 1.5499 -4.8186 23 1 10.4877 3.0026 -4.8227 24 1 12.2555 1.3543 -4.6296 25 1 10.3795 0.9514 -6.1124 26 6 3.4307 1.2835 -0.0058 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2118 2.3165 -0.0005 31 1 1.3236 4.5118 -0.0019 32 1 3.6825 6.9532 -0.0030 33 1 2.4377 6.0427 -0.8921 34 1 2.4391 6.0435 0.8879 35 1 5.9063 3.3100 0.4779 36 1 8.2596 3.7614 -0.8045 37 1 7.6212 3.2413 0.7734 38 1 9.1950 2.6337 0.2062 39 1 9.9748 0.9045 -0.1077 40 1 8.7690 -0.3400 0.2992 41 1 9.8950 -0.6001 -1.0548 42 1 10.5665 -1.0985 -3.8113 43 1 4.0190 0.3779 -0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086280420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:00 Heat of formation + Delta-G solvation = -56.080212 kcal Electronic energy + Delta-G solvation = -25875.563312 eV Core-core repulsion = 22115.867428 eV Total energy + Delta-G solvation = -3759.695884 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71987 -39.38208 -38.87390 -36.53853 -35.30097 -34.14104 -32.71407 -30.35112 -29.62997 -28.61022 -27.27097 -26.89588 -26.11419 -25.16204 -23.03900 -21.93287 -20.93478 -19.12833 -18.60423 -17.67405 -17.32953 -16.58433 -16.21360 -15.88789 -15.84399 -15.53367 -15.00235 -14.75443 -14.64880 -14.11623 -13.90013 -13.35541 -13.20419 -12.80607 -12.73404 -12.56988 -12.46294 -12.34281 -11.67589 -11.64709 -11.54053 -11.50748 -11.04476 -10.97101 -10.78252 -10.65230 -10.53848 -10.20496 -10.12352 -9.95794 -9.24724 -9.08485 -8.39209 -8.22218 -7.64503 -7.36835 -6.02964 -4.10242 1.35424 1.53568 3.09297 3.21546 3.29271 3.37178 3.40426 3.51155 3.66971 4.07933 4.40011 4.59688 4.71618 4.90105 5.01895 5.03352 5.05388 5.08587 5.22553 5.28326 5.35465 5.39748 5.54144 5.63937 5.89601 5.94917 6.06126 6.18861 6.29067 6.44728 6.48145 6.76034 6.84531 6.98371 7.04713 7.19789 7.34145 7.52033 7.57509 7.74533 7.87621 8.10940 8.26132 8.68777 8.91169 9.26432 9.56630 11.02438 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.003730 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.100642 B = 7504.378386 C = 8367.460656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.113 3.887 4 C -0.198 4.198 5 C -0.152 4.152 6 C 0.057 3.943 7 O -0.317 6.317 8 C 0.031 3.969 9 C 0.195 3.805 10 N -0.686 5.686 11 C 0.697 3.303 12 O -0.578 6.578 13 N -0.603 5.603 14 C 0.088 3.912 15 C 0.271 3.729 16 H 0.066 0.934 17 C -0.148 4.148 18 C -0.523 4.523 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.120 4.120 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.407 0.593 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.012 0.988 41 H 0.095 0.905 42 H 0.262 0.738 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.257 10.152 10.112 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.067 3.933 4 C -0.217 4.217 5 C -0.172 4.172 6 C 0.010 3.990 7 O -0.231 6.231 8 C -0.064 4.064 9 C 0.097 3.903 10 N -0.335 5.335 11 C 0.399 3.601 12 O -0.455 6.455 13 N -0.337 5.337 14 C -0.056 4.056 15 C 0.171 3.829 16 H 0.084 0.916 17 C -0.206 4.206 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.141 4.141 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.245 0.755 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.031 0.969 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.115 9.137 9.600 20.865 hybrid contribution 0.254 1.226 -0.598 1.387 sum -15.861 10.363 9.002 20.976 Atomic orbital electron populations 1.22998 0.78972 1.03650 1.00968 1.86120 1.20772 1.26703 1.89094 1.18680 0.91753 0.84082 0.98775 1.20880 0.99652 0.91588 1.09623 1.20686 0.92279 0.98249 1.05961 1.18624 0.90895 0.84404 1.05076 1.86053 1.35282 1.11960 1.89814 1.22977 0.95772 0.86686 1.00959 1.16486 0.82419 0.90176 1.01188 1.42786 1.03447 1.32428 1.54875 1.15983 0.82355 0.82402 0.79394 1.90872 1.69824 1.33074 1.51743 1.47581 1.03407 1.27503 1.55218 1.21499 0.98776 0.89769 0.95589 1.18911 0.89072 0.86256 0.88629 0.91618 1.22117 0.99807 1.00924 0.97777 1.21379 1.26790 0.95057 1.13003 0.92242 1.24881 0.96573 0.94836 0.97514 1.69890 1.38836 1.05345 1.38570 0.86439 0.79319 0.79555 0.82057 1.19861 1.20982 1.20939 1.20462 0.91486 0.98177 1.03970 0.92980 0.92880 0.88480 0.85509 0.85182 0.88473 0.92910 0.93015 0.75533 0.93182 0.93673 0.90416 0.95130 0.96870 0.88687 0.92775 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.54 10.50 -19.68 -0.21 -4.74 16 3 C 0.11 1.72 6.68 -39.26 -0.26 1.46 16 4 C -0.20 -2.45 9.03 -39.40 -0.36 -2.81 16 5 C -0.15 -1.85 9.03 -39.48 -0.36 -2.20 16 6 C 0.06 0.83 6.70 -39.10 -0.26 0.57 16 7 O -0.32 -4.15 10.05 -19.93 -0.20 -4.35 16 8 C 0.03 0.26 9.81 101.05 0.99 1.25 16 9 C 0.19 3.35 6.32 -83.50 -0.53 2.83 16 10 N -0.69 -12.24 5.07 -14.12 -0.07 -12.32 16 11 C 0.70 15.45 8.13 -86.92 -0.71 14.74 16 12 O -0.58 -14.89 13.09 5.28 0.07 -14.82 16 13 N -0.60 -13.31 2.75 -181.01 -0.50 -13.81 16 14 C 0.09 1.51 9.48 59.84 0.57 2.08 16 15 C 0.27 7.07 2.64 -69.09 -0.18 6.89 16 16 H 0.07 1.98 6.90 -51.93 -0.36 1.63 16 17 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 18 C -0.52 -14.40 8.37 -34.44 -0.29 -14.69 16 19 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 22 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 C -0.12 -2.14 8.63 -39.27 -0.34 -2.48 16 27 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.13 1.19 6.28 -52.49 -0.33 0.86 16 31 H 0.13 1.17 6.29 -52.48 -0.33 0.84 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 34 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 35 H 0.41 6.17 6.26 -40.82 -0.26 5.91 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.61 6.30 -51.93 -0.33 0.29 16 38 H 0.08 1.33 6.42 -51.93 -0.33 0.99 16 39 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 40 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.16 3.27 6.19 -52.49 -0.33 2.94 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -33.50 349.07 -6.27 -39.77 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.74 Total: 6.07 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -0.49 Total: 7.33 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.06 Total: -50.88 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.34 Total: -23.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.50 -6.27 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.310 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds