Wall clock time and date at job start Tue Mar 31 2020 09:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35974 * 117.00232 * 2 1 4 4 C 1.38725 * 119.96234 * 0.02562 * 3 2 1 5 5 C 1.38191 * 120.10088 * 179.74574 * 4 3 2 6 6 C 1.38679 * 120.03595 * 0.50824 * 5 4 3 7 7 N 1.40375 * 120.02835 * 179.74304 * 6 5 4 8 8 C 1.34771 * 120.00474 * 34.66417 * 7 6 5 9 9 O 1.21595 * 119.99902 * 355.55948 * 8 7 6 10 10 N 1.34775 * 120.00356 * 175.56480 * 8 7 6 11 11 C 1.46500 * 120.00002 * 359.97438 * 10 8 7 12 12 C 1.46503 * 119.99985 * 179.97438 * 10 8 7 13 13 H 1.08995 * 109.47070 * 0.02562 * 12 10 8 14 14 C 1.53007 * 109.46971 * 119.99757 * 12 10 8 15 15 C 1.50698 * 109.47059 * 239.99614 * 12 10 8 16 16 H 1.07998 * 119.99879 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00098 * 180.02562 * 15 12 10 18 18 N 1.31521 * 119.99862 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00108 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47068 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.46838 * 299.99810 * 19 17 15 22 22 H 1.48491 * 109.47334 * 60.00099 * 19 17 15 23 23 C 1.39261 * 119.93755 * 359.47223 * 6 5 4 24 24 O 1.35974 * 120.05530 * 180.24800 * 23 6 5 25 25 C 1.42908 * 117.00270 * 180.02562 * 24 23 6 26 26 C 1.38522 * 119.89280 * 0.27647 * 23 6 5 27 27 H 1.09007 * 109.46615 * 60.00410 * 1 2 3 28 28 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47097 * 300.00641 * 1 2 3 30 30 H 1.08001 * 119.95362 * 0.02751 * 4 3 2 31 31 H 1.07997 * 119.98061 * 180.27895 * 5 4 3 32 32 H 0.97003 * 119.99805 * 214.66344 * 7 6 5 33 33 H 1.08994 * 109.47484 * 270.00907 * 11 10 8 34 34 H 1.08998 * 109.46921 * 30.00310 * 11 10 8 35 35 H 1.09001 * 109.46959 * 150.00020 * 11 10 8 36 36 H 1.08998 * 109.47189 * 300.00058 * 14 12 10 37 37 H 1.08997 * 109.46770 * 59.99756 * 14 12 10 38 38 H 1.08997 * 109.46764 * 179.97438 * 14 12 10 39 39 H 0.96996 * 119.99900 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.46383 * 59.99983 * 25 24 23 41 41 H 1.08995 * 109.46975 * 180.02562 * 25 24 23 42 42 H 1.08999 * 109.46598 * 300.00101 * 25 24 23 43 43 H 1.08007 * 120.01846 * 179.97438 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2901 2.3745 0.0005 5 6 1.9145 3.6073 0.0058 6 6 3.2992 3.6840 0.0000 7 7 3.9333 4.9364 -0.0001 8 6 3.3842 5.9699 0.6684 9 8 2.3002 5.8405 1.2038 10 7 4.0365 7.1469 0.7433 11 6 5.3428 7.3027 0.0986 12 6 3.4393 8.2704 1.4694 13 1 2.4753 7.9677 1.8780 14 6 4.3672 8.6907 2.6111 15 6 3.2445 9.4305 0.5276 16 1 3.5359 9.3398 -0.5084 17 6 2.6941 10.6077 0.9883 18 7 2.3397 10.7183 2.2501 19 14 2.4519 12.0455 -0.1793 20 1 1.8478 13.1848 0.5570 21 1 3.7654 12.4574 -0.7364 22 1 1.5506 11.6375 -1.2866 23 6 4.0599 2.5176 -0.0001 24 8 5.4177 2.5901 -0.0007 25 6 6.1336 1.3532 -0.0014 26 6 3.4312 1.2833 -0.0002 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2117 2.3164 0.0014 31 1 1.3239 4.5114 0.0108 32 1 4.7668 5.0580 -0.4812 33 1 6.1298 7.0297 0.8014 34 1 5.3959 6.6544 -0.7760 35 1 5.4744 8.3400 -0.2095 36 1 4.5082 7.8516 3.2924 37 1 5.3315 8.9932 2.2029 38 1 3.9231 9.5269 3.1511 39 1 1.9529 11.5466 2.5743 40 1 5.8703 0.7817 -0.8914 41 1 7.2049 1.5535 -0.0014 42 1 5.8712 0.7812 0.8886 43 1 4.0192 0.3773 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086280555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:04 Heat of formation + Delta-G solvation = -58.795082 kcal Electronic energy + Delta-G solvation = -25761.375952 eV Core-core repulsion = 22001.562343 eV Total energy + Delta-G solvation = -3759.813610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74067 -39.45258 -38.89121 -36.68075 -35.25543 -34.01332 -32.66740 -30.45159 -29.71009 -28.64784 -27.34838 -26.89459 -26.01080 -25.18337 -22.92489 -22.00665 -20.96199 -19.10437 -18.77544 -17.78382 -16.86580 -16.65672 -16.15781 -16.13811 -15.91387 -15.56880 -15.13907 -14.90502 -14.67251 -14.16548 -13.89771 -13.29666 -13.09054 -12.87227 -12.64368 -12.49039 -12.42219 -12.36289 -11.72335 -11.66609 -11.56515 -11.47745 -11.12202 -11.02435 -10.84585 -10.76953 -10.60910 -10.23662 -10.13749 -9.60989 -9.28092 -9.07498 -8.51397 -8.39977 -7.68617 -7.27129 -6.04730 -4.12713 1.42409 1.47940 3.05501 3.18685 3.29479 3.34582 3.35573 3.41636 3.67258 4.06697 4.38518 4.61035 4.83290 4.92658 4.97447 5.03293 5.04438 5.07992 5.26134 5.28732 5.32621 5.37604 5.51160 5.65591 5.72098 5.94626 6.03977 6.24949 6.36108 6.47066 6.59654 6.75604 6.85737 6.98237 7.07159 7.19623 7.24501 7.49112 7.52375 7.71777 7.88526 8.11246 8.24917 8.70664 8.88477 9.28381 9.54444 11.00429 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.003398 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.585708 B = 8237.600294 C = 9099.153410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.137 3.863 4 C -0.221 4.221 5 C -0.047 4.047 6 C 0.119 3.881 7 N -0.686 5.686 8 C 0.698 3.302 9 O -0.585 6.585 10 N -0.604 5.604 11 C 0.085 3.915 12 C 0.273 3.727 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.286 1.286 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.130 3.870 24 O -0.312 6.312 25 C 0.029 3.971 26 C -0.225 4.225 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.130 0.870 31 H 0.156 0.844 32 H 0.404 0.596 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.011 0.989 37 H 0.029 0.971 38 H 0.094 0.906 39 H 0.264 0.736 40 H 0.055 0.945 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -19.411 -5.816 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.091 3.909 4 C -0.241 4.241 5 C -0.067 4.067 6 C 0.023 3.977 7 N -0.337 5.337 8 C 0.400 3.600 9 O -0.463 6.463 10 N -0.338 5.338 11 C -0.059 4.059 12 C 0.173 3.827 13 H 0.083 0.917 14 C -0.205 4.205 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.727 3.273 20 H -0.212 1.212 21 H -0.203 1.203 22 H -0.203 1.203 23 C 0.082 3.918 24 O -0.225 6.225 25 C -0.066 4.066 26 C -0.244 4.244 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.173 0.827 32 H 0.241 0.759 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.030 0.970 37 H 0.048 0.952 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.572 -19.258 -5.246 20.277 hybrid contribution 0.173 0.720 -0.841 1.121 sum 3.746 -18.537 -6.087 19.867 Atomic orbital electron populations 1.23038 0.78413 1.03570 1.01686 1.86014 1.21359 1.27062 1.89022 1.18585 0.91412 0.84104 0.96786 1.21080 1.00115 0.91543 1.11317 1.21138 0.92318 0.98641 0.94618 1.16800 0.90859 0.82461 1.07581 1.42715 1.28131 1.07888 1.54933 1.15966 0.84218 0.80388 0.79407 1.90833 1.20857 1.82315 1.52325 1.47573 1.19633 1.11227 1.55379 1.21532 0.85332 1.03339 0.95682 1.18874 0.93396 0.81186 0.89252 0.91728 1.22101 0.98986 1.00744 0.98699 1.21310 1.41973 0.97370 0.95899 0.92298 1.24882 0.95113 0.98498 0.95248 1.69874 1.41868 1.26966 1.13872 0.86549 0.78402 0.81576 0.80797 1.21196 1.20275 1.20266 1.18411 0.82359 0.92058 0.99009 1.86074 1.14989 1.32519 1.88968 1.23045 0.96645 0.85543 1.01412 1.20043 0.92546 0.96617 1.15237 0.92576 0.88519 0.92471 0.85173 0.82656 0.75858 0.93833 0.93524 0.89738 0.96986 0.95200 0.88785 0.92637 0.92649 0.88295 0.92600 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.84 10.50 -19.66 -0.21 -4.04 16 3 C 0.14 1.85 6.68 -39.24 -0.26 1.59 16 4 C -0.22 -3.12 9.03 -39.42 -0.36 -3.48 16 5 C -0.05 -0.79 8.70 -39.44 -0.34 -1.13 16 6 C 0.12 2.01 6.33 -83.40 -0.53 1.49 16 7 N -0.69 -12.14 5.07 -14.07 -0.07 -12.21 16 8 C 0.70 15.29 8.13 -86.92 -0.71 14.59 16 9 O -0.58 -14.73 13.09 5.28 0.07 -14.67 16 10 N -0.60 -13.26 2.75 -181.01 -0.50 -13.76 16 11 C 0.09 1.47 9.24 59.85 0.55 2.02 16 12 C 0.27 7.07 2.64 -69.08 -0.18 6.88 16 13 H 0.06 1.93 6.90 -51.93 -0.36 1.58 16 14 C -0.15 -3.57 8.97 37.16 0.33 -3.24 16 15 C -0.53 -14.25 7.99 -34.44 -0.28 -14.53 16 16 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.13 1.88 6.70 -39.10 -0.26 1.62 16 24 O -0.31 -4.01 10.05 -19.66 -0.20 -4.21 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.22 -2.95 8.97 -39.32 -0.35 -3.30 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 30 H 0.13 1.54 6.28 -52.49 -0.33 1.21 16 31 H 0.16 2.96 6.19 -52.49 -0.32 2.64 16 32 H 0.40 6.15 6.27 -40.82 -0.26 5.89 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.66 6.30 -51.93 -0.33 0.33 16 35 H 0.08 1.52 7.02 -51.93 -0.36 1.16 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 43 H 0.14 1.46 6.30 -52.48 -0.33 1.13 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -32.58 349.77 -6.33 -38.91 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.81 Total: 6.58 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -0.49 Total: 6.64 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.06 Total: -50.50 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.33 Total: -22.91 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.58 -6.33 -38.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.887 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds