Wall clock time and date at job start Tue Mar 31 2020 09:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35967 * 117.00205 * 2 1 4 4 C 1.38730 * 119.96564 * 0.02562 * 3 2 1 5 5 C 1.38190 * 120.10203 * 179.69799 * 4 3 2 6 6 C 1.38679 * 120.03930 * 0.56095 * 5 4 3 7 7 N 1.40371 * 120.03408 * 179.72100 * 6 5 4 8 8 C 1.34779 * 120.00183 * 34.65089 * 7 6 5 9 9 O 1.21592 * 119.99577 * 355.56947 * 8 7 6 10 10 N 1.34773 * 119.99729 * 175.56803 * 8 7 6 11 11 C 1.46499 * 120.00258 * 359.97438 * 10 8 7 12 12 C 1.46500 * 119.99560 * 180.02562 * 10 8 7 13 13 H 1.08997 * 109.47231 * 0.02562 * 12 10 8 14 14 C 1.52995 * 109.47237 * 239.99747 * 12 10 8 15 15 C 1.50704 * 109.47255 * 119.99852 * 12 10 8 16 16 H 1.08006 * 119.99470 * 0.02562 * 15 12 10 17 17 C 1.37870 * 120.00281 * 180.02562 * 15 12 10 18 18 N 1.31512 * 119.99986 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00276 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47278 * 89.99297 * 19 17 15 21 21 H 1.48494 * 109.47284 * 209.99933 * 19 17 15 22 22 H 1.48505 * 109.46936 * 329.99819 * 19 17 15 23 23 C 1.39278 * 119.93349 * 359.43980 * 6 5 4 24 24 O 1.35969 * 120.05219 * 180.30148 * 23 6 5 25 25 C 1.42901 * 116.99967 * 180.02562 * 24 23 6 26 26 C 1.38509 * 119.89364 * 0.28006 * 23 6 5 27 27 H 1.09005 * 109.47220 * 59.99430 * 1 2 3 28 28 H 1.08998 * 109.47535 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47002 * 299.99949 * 1 2 3 30 30 H 1.07995 * 119.94268 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.98209 * 180.29630 * 5 4 3 32 32 H 0.97006 * 119.99593 * 214.65487 * 7 6 5 33 33 H 1.08997 * 109.47227 * 269.99872 * 11 10 8 34 34 H 1.08999 * 109.46873 * 30.00590 * 11 10 8 35 35 H 1.09003 * 109.46859 * 150.00353 * 11 10 8 36 36 H 1.08998 * 109.47305 * 60.00248 * 14 12 10 37 37 H 1.09007 * 109.47589 * 180.02562 * 14 12 10 38 38 H 1.08997 * 109.47395 * 300.00371 * 14 12 10 39 39 H 0.96999 * 120.00116 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47012 * 180.02562 * 25 24 23 41 41 H 1.09002 * 109.47026 * 300.00045 * 25 24 23 42 42 H 1.09000 * 109.47033 * 60.00293 * 25 24 23 43 43 H 1.08000 * 120.02164 * 179.97438 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2901 2.3745 0.0005 5 6 1.9145 3.6073 0.0068 6 6 3.2992 3.6841 0.0009 7 7 3.9334 4.9364 0.0014 8 6 3.3842 5.9696 0.6702 9 8 2.3002 5.8399 1.2056 10 7 4.0366 7.1465 0.7455 11 6 5.3429 7.3025 0.1010 12 6 3.4399 8.2695 1.4730 13 1 2.4762 7.9664 1.8820 14 6 3.2413 9.4480 0.5179 15 6 4.3546 8.6826 2.5972 16 1 5.2873 8.1611 2.7538 17 6 4.0008 9.7262 3.4257 18 7 2.8652 10.3616 3.2347 19 14 5.1349 10.2388 4.8188 20 1 6.0815 11.2738 4.3311 21 1 4.3281 10.7927 5.9356 22 1 5.8967 9.0572 5.2971 23 6 4.0600 2.5175 0.0004 24 8 5.4177 2.5900 0.0007 25 6 6.1335 1.3531 -0.0004 26 6 3.4312 1.2833 -0.0001 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2117 2.3163 0.0005 31 1 1.3239 4.5114 0.0121 32 1 4.7669 5.0581 -0.4797 33 1 6.1299 7.0294 0.8039 34 1 5.3960 6.6546 -0.7739 35 1 5.4746 8.3399 -0.2067 36 1 2.5797 9.1493 -0.2952 37 1 2.7977 10.2838 1.0592 38 1 4.2053 9.7510 0.1092 39 1 2.6164 11.0960 3.8174 40 1 7.2049 1.5534 0.0005 41 1 5.8705 0.7803 0.8889 42 1 5.8709 0.7823 -0.8911 43 1 4.0191 0.3773 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086280556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:08 Heat of formation + Delta-G solvation = -57.911054 kcal Electronic energy + Delta-G solvation = -25779.880306 eV Core-core repulsion = 22020.105031 eV Total energy + Delta-G solvation = -3759.775275 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73700 -39.45500 -38.88513 -36.68017 -35.26214 -34.01425 -32.66220 -30.45222 -29.70801 -28.64113 -27.34081 -26.88978 -26.05397 -25.16734 -22.92830 -22.00029 -20.95056 -19.10712 -18.77558 -17.77625 -16.84604 -16.66676 -16.24614 -16.04237 -15.89283 -15.56434 -15.13311 -14.92104 -14.65536 -14.16964 -13.92276 -13.25160 -13.19969 -12.80481 -12.64817 -12.56780 -12.44479 -12.36691 -11.69220 -11.64914 -11.53078 -11.48195 -11.13769 -11.04295 -10.79600 -10.71583 -10.65884 -10.23080 -10.12735 -9.62727 -9.23238 -9.09153 -8.50834 -8.39729 -7.68450 -7.26536 -6.03945 -4.11244 1.42738 1.48252 3.06353 3.18364 3.28909 3.35787 3.37718 3.42874 3.67290 4.08301 4.39448 4.60248 4.83457 4.93998 4.97621 5.04147 5.05160 5.07857 5.26975 5.29479 5.32609 5.38914 5.51737 5.63681 5.71373 5.94653 6.05022 6.25105 6.31057 6.46697 6.58377 6.75860 6.83181 6.98142 7.04310 7.19063 7.23839 7.49147 7.52145 7.73851 7.88516 8.10496 8.25643 8.70699 8.90266 9.28352 9.55878 11.01399 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.003422 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.616544 B = 8179.550078 C = 8730.602336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.137 3.863 4 C -0.221 4.221 5 C -0.047 4.047 6 C 0.119 3.881 7 N -0.686 5.686 8 C 0.698 3.302 9 O -0.585 6.585 10 N -0.604 5.604 11 C 0.088 3.912 12 C 0.273 3.727 13 H 0.065 0.935 14 C -0.148 4.148 15 C -0.524 4.524 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.130 3.870 24 O -0.312 6.312 25 C 0.029 3.971 26 C -0.224 4.224 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.130 0.870 31 H 0.155 0.845 32 H 0.404 0.596 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.012 0.988 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.263 0.737 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -17.909 -10.163 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.091 3.909 4 C -0.241 4.241 5 C -0.068 4.068 6 C 0.023 3.977 7 N -0.337 5.337 8 C 0.400 3.600 9 O -0.463 6.463 10 N -0.339 5.339 11 C -0.056 4.056 12 C 0.172 3.828 13 H 0.083 0.917 14 C -0.206 4.206 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.082 3.918 24 O -0.225 6.225 25 C -0.066 4.066 26 C -0.244 4.244 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.172 0.828 32 H 0.241 0.759 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.031 0.969 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.261 -17.740 -9.651 20.235 hybrid contribution 0.939 0.228 0.599 1.137 sum 2.201 -17.512 -9.052 19.836 Atomic orbital electron populations 1.23035 0.78430 1.03571 1.01663 1.86013 1.21346 1.27064 1.89017 1.18585 0.91410 0.84103 0.96782 1.21069 1.00082 0.91552 1.11388 1.21104 0.92272 0.98581 0.94809 1.16802 0.90860 0.82470 1.07546 1.42716 1.28095 1.07889 1.54975 1.15959 0.84316 0.80419 0.79272 1.90832 1.21185 1.82189 1.52094 1.47566 1.19480 1.11581 1.55228 1.21489 0.86013 1.02483 0.95592 1.18883 0.95394 0.79928 0.88565 0.91684 1.22118 0.98594 1.02142 0.97775 1.21351 1.05780 1.16113 1.13051 0.92301 1.24877 0.95304 0.96098 0.97511 1.69876 1.21678 1.22490 1.38664 0.86492 0.80483 0.78668 0.81725 1.20658 1.21127 1.19966 1.18418 0.82398 0.92064 0.98879 1.86077 1.14969 1.32533 1.88920 1.23048 0.96674 0.85526 1.01401 1.20047 0.92552 0.96634 1.15192 0.92595 0.88522 0.92475 0.85191 0.82763 0.75873 0.93237 0.93660 0.90494 0.96921 0.88718 0.95134 0.92724 0.88274 0.92574 0.92663 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.85 10.50 -19.64 -0.21 -4.05 16 3 C 0.14 1.86 6.68 -39.24 -0.26 1.60 16 4 C -0.22 -3.11 9.03 -39.42 -0.36 -3.46 16 5 C -0.05 -0.79 8.70 -39.44 -0.34 -1.13 16 6 C 0.12 2.02 6.33 -83.40 -0.53 1.49 16 7 N -0.69 -12.13 5.07 -14.06 -0.07 -12.20 16 8 C 0.70 15.29 8.13 -86.92 -0.71 14.58 16 9 O -0.58 -14.72 13.09 5.28 0.07 -14.65 16 10 N -0.60 -13.26 2.75 -181.01 -0.50 -13.76 16 11 C 0.09 1.52 9.48 59.85 0.57 2.09 16 12 C 0.27 7.05 2.64 -69.08 -0.18 6.87 16 13 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 14 C -0.15 -3.54 8.95 37.15 0.33 -3.21 16 15 C -0.52 -14.38 8.37 -34.44 -0.29 -14.67 16 16 H 0.06 1.60 7.64 -52.48 -0.40 1.20 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.13 1.92 6.70 -39.10 -0.26 1.65 16 24 O -0.31 -4.11 10.05 -19.64 -0.20 -4.31 16 25 C 0.03 0.25 9.81 101.05 0.99 1.24 16 26 C -0.22 -2.98 8.97 -39.32 -0.35 -3.33 16 27 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.13 1.52 6.28 -52.49 -0.33 1.19 16 31 H 0.15 2.86 6.19 -52.49 -0.32 2.53 16 32 H 0.40 6.12 6.27 -40.82 -0.26 5.86 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.61 6.30 -51.93 -0.33 0.29 16 35 H 0.08 1.31 6.43 -51.93 -0.33 0.98 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 2.49 6.07 -51.92 -0.32 2.17 16 38 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 42 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 43 H 0.14 1.49 6.30 -52.49 -0.33 1.16 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -32.95 349.10 -6.27 -39.22 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.74 Total: 6.24 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.49 Total: 6.62 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.06 Total: -50.61 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.33 Total: -23.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.95 -6.27 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.691 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds