Wall clock time and date at job start Tue Mar 31 2020 09:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35967 * 117.00205 * 2 1 4 4 C 1.38730 * 119.96564 * 0.02562 * 3 2 1 5 5 C 1.38190 * 120.10203 * 179.69799 * 4 3 2 6 6 C 1.38679 * 120.03930 * 0.56095 * 5 4 3 7 7 N 1.40371 * 120.03408 * 179.72100 * 6 5 4 8 8 C 1.34779 * 120.00183 * 34.65089 * 7 6 5 9 9 O 1.21592 * 119.99577 * 355.56947 * 8 7 6 10 10 N 1.34773 * 119.99729 * 175.56803 * 8 7 6 11 11 C 1.46499 * 120.00258 * 359.97438 * 10 8 7 12 12 C 1.46500 * 119.99560 * 180.02562 * 10 8 7 13 13 H 1.08997 * 109.47231 * 0.02562 * 12 10 8 14 14 C 1.52995 * 109.47237 * 239.99747 * 12 10 8 15 15 C 1.50704 * 109.47255 * 119.99852 * 12 10 8 16 16 H 1.08006 * 119.99470 * 0.02562 * 15 12 10 17 17 C 1.37870 * 120.00281 * 180.02562 * 15 12 10 18 18 N 1.31512 * 119.99986 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00276 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47278 * 89.99297 * 19 17 15 21 21 H 1.48494 * 109.47284 * 209.99933 * 19 17 15 22 22 H 1.48505 * 109.46936 * 329.99819 * 19 17 15 23 23 C 1.39278 * 119.93349 * 359.43980 * 6 5 4 24 24 O 1.35969 * 120.05219 * 180.30148 * 23 6 5 25 25 C 1.42901 * 116.99967 * 180.02562 * 24 23 6 26 26 C 1.38509 * 119.89364 * 0.28006 * 23 6 5 27 27 H 1.09005 * 109.47220 * 59.99430 * 1 2 3 28 28 H 1.08998 * 109.47535 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47002 * 299.99949 * 1 2 3 30 30 H 1.07995 * 119.94268 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.98209 * 180.29630 * 5 4 3 32 32 H 0.97006 * 119.99593 * 214.65487 * 7 6 5 33 33 H 1.08997 * 109.47227 * 269.99872 * 11 10 8 34 34 H 1.08999 * 109.46873 * 30.00590 * 11 10 8 35 35 H 1.09003 * 109.46859 * 150.00353 * 11 10 8 36 36 H 1.08998 * 109.47305 * 60.00248 * 14 12 10 37 37 H 1.09007 * 109.47589 * 180.02562 * 14 12 10 38 38 H 1.08997 * 109.47395 * 300.00371 * 14 12 10 39 39 H 0.96999 * 120.00116 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47012 * 180.02562 * 25 24 23 41 41 H 1.09002 * 109.47026 * 300.00045 * 25 24 23 42 42 H 1.09000 * 109.47033 * 60.00293 * 25 24 23 43 43 H 1.08000 * 120.02164 * 179.97438 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2901 2.3745 0.0005 5 6 1.9145 3.6073 0.0068 6 6 3.2992 3.6841 0.0009 7 7 3.9334 4.9364 0.0014 8 6 3.3842 5.9696 0.6702 9 8 2.3002 5.8399 1.2056 10 7 4.0366 7.1465 0.7455 11 6 5.3429 7.3025 0.1010 12 6 3.4399 8.2695 1.4730 13 1 2.4762 7.9664 1.8820 14 6 3.2413 9.4480 0.5179 15 6 4.3546 8.6826 2.5972 16 1 5.2873 8.1611 2.7538 17 6 4.0008 9.7262 3.4257 18 7 2.8652 10.3616 3.2347 19 14 5.1349 10.2388 4.8188 20 1 6.0815 11.2738 4.3311 21 1 4.3281 10.7927 5.9356 22 1 5.8967 9.0572 5.2971 23 6 4.0600 2.5175 0.0004 24 8 5.4177 2.5900 0.0007 25 6 6.1335 1.3531 -0.0004 26 6 3.4312 1.2833 -0.0001 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2117 2.3163 0.0005 31 1 1.3239 4.5114 0.0121 32 1 4.7669 5.0581 -0.4797 33 1 6.1299 7.0294 0.8039 34 1 5.3960 6.6546 -0.7739 35 1 5.4746 8.3399 -0.2067 36 1 2.5797 9.1493 -0.2952 37 1 2.7977 10.2838 1.0592 38 1 4.2053 9.7510 0.1092 39 1 2.6164 11.0960 3.8174 40 1 7.2049 1.5534 0.0005 41 1 5.8705 0.7803 0.8889 42 1 5.8709 0.7823 -0.8911 43 1 4.0191 0.3773 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086280556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:07 Heat of formation + Delta-G solvation = -79.966552 kcal Electronic energy + Delta-G solvation = -25780.836704 eV Core-core repulsion = 22020.105031 eV Total energy + Delta-G solvation = -3760.731674 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96391 -40.85801 -39.86789 -37.96019 -36.91770 -35.54358 -34.53997 -31.64120 -31.30130 -29.87871 -28.08586 -27.92658 -27.52543 -27.24130 -24.29809 -23.14899 -22.49261 -20.73901 -19.86910 -19.15890 -18.54264 -17.99507 -17.61726 -17.14738 -17.00944 -16.82033 -16.41766 -16.27542 -16.01598 -15.71764 -15.09770 -14.95836 -14.47216 -14.33211 -13.97737 -13.78160 -13.62766 -13.45099 -13.20356 -13.04969 -12.92601 -12.69522 -12.58007 -12.47849 -12.44568 -12.18012 -12.14114 -12.05546 -11.77967 -11.17848 -11.04913 -10.76504 -10.50024 -9.60247 -9.38451 -8.53640 -8.12720 -6.29023 0.29964 0.32686 1.41751 1.43552 1.53176 1.74093 2.14806 2.18526 2.41941 2.45604 2.76868 3.09453 3.14972 3.80253 4.03152 4.11987 4.24236 4.32376 4.42712 4.43516 4.44877 4.49210 4.60001 4.63061 4.75096 4.77911 4.79310 4.81949 4.91271 5.00263 5.06411 5.14935 5.33746 5.38423 5.45091 5.55517 5.68603 5.72230 5.99876 6.16924 6.25671 6.27501 6.45198 6.78239 7.10351 7.38109 7.65732 8.91411 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.003422 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.616544 B = 8179.550078 C = 8730.602336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.144 3.856 4 C -0.224 4.224 5 C -0.064 4.064 6 C 0.082 3.918 7 N -0.668 5.668 8 C 0.692 3.308 9 O -0.628 6.628 10 N -0.612 5.612 11 C 0.085 3.915 12 C 0.279 3.721 13 H 0.012 0.988 14 C -0.133 4.133 15 C -0.539 4.539 16 H 0.057 0.943 17 C 0.016 3.984 18 N -0.916 5.916 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.139 3.861 24 O -0.326 6.326 25 C 0.018 3.982 26 C -0.224 4.224 27 H 0.065 0.935 28 H 0.125 0.875 29 H 0.058 0.942 30 H 0.149 0.851 31 H 0.126 0.874 32 H 0.416 0.584 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.021 0.979 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.265 0.735 40 H 0.122 0.878 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 -19.945 -10.752 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.098 3.902 4 C -0.244 4.244 5 C -0.085 4.085 6 C -0.013 4.013 7 N -0.320 5.320 8 C 0.394 3.606 9 O -0.509 6.509 10 N -0.346 5.346 11 C -0.057 4.057 12 C 0.177 3.823 13 H 0.030 0.970 14 C -0.191 4.191 15 C -0.578 4.578 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.199 1.199 23 C 0.091 3.909 24 O -0.239 6.239 25 C -0.076 4.076 26 C -0.243 4.243 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.076 0.924 30 H 0.167 0.833 31 H 0.144 0.856 32 H 0.255 0.745 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.141 -19.822 -10.286 22.552 hybrid contribution 0.324 0.671 0.745 1.054 sum 3.464 -19.151 -9.541 21.675 Atomic orbital electron populations 1.23368 0.76415 1.05711 1.02217 1.86023 1.23406 1.25932 1.88507 1.18708 0.91762 0.84460 0.95302 1.21198 1.01182 0.90857 1.11132 1.20960 0.92511 0.98664 0.96317 1.17037 0.91304 0.82685 1.10262 1.42375 1.28169 1.07324 1.54092 1.16135 0.83950 0.81118 0.79382 1.90799 1.23152 1.83039 1.53954 1.47441 1.21029 1.10806 1.55355 1.21721 0.83574 1.03691 0.96736 1.18470 0.93116 0.81485 0.89269 0.97021 1.21899 0.99524 1.00471 0.97255 1.21585 1.05876 1.16334 1.13971 0.92434 1.25704 0.96707 0.96090 0.99845 1.70016 1.23142 1.22816 1.39561 0.85457 0.78623 0.78404 0.78513 1.19122 1.21056 1.19867 1.18362 0.83248 0.91542 0.97745 1.86063 1.14089 1.35201 1.88555 1.23410 0.97406 0.84273 1.02540 1.20339 0.92776 0.97041 1.14169 0.91629 0.85678 0.92351 0.83350 0.85583 0.74473 0.92818 0.89850 0.90230 0.96040 0.91156 0.93247 0.92608 0.86030 0.91946 0.90910 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -6.98 10.50 -93.18 -0.98 -7.96 16 3 C 0.14 3.66 6.68 22.49 0.15 3.82 16 4 C -0.22 -6.24 9.03 22.38 0.20 -6.04 16 5 C -0.06 -2.21 8.70 22.36 0.19 -2.02 16 6 C 0.08 2.81 6.33 38.13 0.24 3.05 16 7 N -0.67 -23.83 5.07 -316.66 -1.61 -25.44 16 8 C 0.69 31.36 8.13 179.05 1.46 32.82 16 9 O -0.63 -33.61 13.09 -4.01 -0.05 -33.66 16 10 N -0.61 -27.36 2.75 -844.85 -2.33 -29.69 16 11 C 0.09 2.83 9.48 127.77 1.21 4.04 16 12 C 0.28 14.93 2.64 44.24 0.12 15.05 16 13 H 0.01 0.75 6.90 -2.39 -0.02 0.74 16 14 C -0.13 -6.50 8.95 71.98 0.64 -5.86 16 15 C -0.54 -30.08 8.37 25.60 0.21 -29.87 16 16 H 0.06 3.15 7.64 -2.91 -0.02 3.13 16 17 C 0.02 0.90 5.30 84.65 0.45 1.35 16 18 N -0.92 -53.38 11.32 21.44 0.24 -53.14 16 19 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 C 0.14 3.92 6.70 22.58 0.15 4.07 16 24 O -0.33 -7.91 10.05 -93.20 -0.94 -8.85 16 25 C 0.02 0.25 9.81 113.37 1.11 1.36 16 26 C -0.22 -5.45 8.97 22.44 0.20 -5.25 16 27 H 0.07 0.81 7.66 -2.38 -0.02 0.79 16 28 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.82 7.66 -2.38 -0.02 0.80 16 30 H 0.15 3.39 6.28 -2.91 -0.02 3.37 16 31 H 0.13 5.06 6.19 -2.91 -0.02 5.04 16 32 H 0.42 12.23 6.27 -92.70 -0.58 11.64 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 2.09 6.30 -2.39 -0.02 2.08 16 35 H 0.08 2.59 6.43 -2.39 -0.02 2.58 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 3.80 6.07 -2.38 -0.01 3.78 16 38 H 0.05 2.17 6.66 -2.39 -0.02 2.16 16 39 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 0.82 7.66 -2.39 -0.02 0.81 16 42 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 43 H 0.16 3.00 6.30 -2.91 -0.02 2.98 16 Total: -1.00 -74.39 349.10 4.29 -70.10 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.46 Total: 24.92 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 7.46 Total: 17.87 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -3.69 Total: -108.27 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -1.97 Total: -50.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -74.39 4.29 -70.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086280556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.870 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds