Wall clock time and date at job start Tue Mar 31 2020 09:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46820 * 2 1 4 4 C 1.52998 * 109.46785 * 120.00029 * 2 1 3 5 5 C 1.53002 * 109.47130 * 185.00304 * 4 2 1 6 6 C 1.52992 * 109.47739 * 180.02562 * 5 4 2 7 7 O 1.42894 * 109.47649 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47166 * 239.99934 * 2 1 3 9 9 C 1.34770 * 120.00015 * 85.00198 * 8 2 1 10 10 O 1.21594 * 120.00123 * 359.97438 * 9 8 2 11 11 N 1.34776 * 120.00206 * 179.97438 * 9 8 2 12 12 C 1.39949 * 120.00172 * 174.52167 * 11 9 8 13 13 C 1.38958 * 120.03330 * 325.04306 * 12 11 9 14 14 C 1.38161 * 120.06396 * 180.27124 * 13 12 11 15 15 C 1.38163 * 120.14006 * 0.02562 * 14 13 12 16 16 C 1.38912 * 120.07016 * 359.97438 * 15 14 13 17 17 O 1.35746 * 120.03729 * 179.97438 * 16 15 14 18 18 C 1.34829 * 117.00520 * 185.66696 * 17 16 15 19 19 H 1.08007 * 119.99646 * 5.38270 * 18 17 16 20 20 C 1.38649 * 120.00180 * 185.37972 * 18 17 16 21 21 N 1.31556 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99916 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47232 * 89.99937 * 22 20 18 24 24 H 1.48500 * 109.47077 * 210.00471 * 22 20 18 25 25 H 1.48502 * 109.47216 * 330.00012 * 22 20 18 26 26 C 1.38705 * 120.03218 * 145.31673 * 12 11 9 27 27 H 1.08996 * 109.47561 * 300.00098 * 1 2 3 28 28 H 1.09004 * 109.47205 * 60.00507 * 1 2 3 29 29 H 1.09006 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47520 * 304.99788 * 4 2 1 31 31 H 1.08996 * 109.47509 * 65.00386 * 4 2 1 32 32 H 1.09001 * 109.47013 * 300.00179 * 5 4 2 33 33 H 1.09003 * 109.46718 * 59.99305 * 5 4 2 34 34 H 1.09001 * 109.46991 * 300.00164 * 6 5 4 35 35 H 1.08998 * 109.47011 * 59.99136 * 6 5 4 36 36 H 0.96701 * 114.00432 * 180.02562 * 7 6 5 37 37 H 0.96997 * 119.99642 * 264.99849 * 8 2 1 38 38 H 0.96999 * 120.00088 * 354.52290 * 11 9 8 39 39 H 1.07995 * 119.96556 * 0.27630 * 13 12 11 40 40 H 1.08002 * 119.92797 * 180.02562 * 14 13 12 41 41 H 1.07997 * 119.97069 * 180.02562 * 15 14 13 42 42 H 0.97006 * 119.99549 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.06765 * 359.69956 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3138 6 6 4.0749 -1.3350 2.5626 7 8 5.4990 -1.2347 2.6226 8 7 2.0184 -0.6906 -1.1962 9 6 2.1471 -0.0183 -2.3571 10 8 1.8576 1.1614 -2.4118 11 7 2.5969 -0.6535 -3.4574 12 6 2.6224 0.0120 -4.6883 13 6 1.6266 0.9282 -5.0043 14 6 1.6481 1.5814 -6.2216 15 6 2.6586 1.3256 -7.1284 16 6 3.6569 0.4108 -6.8184 17 8 4.6492 0.1597 -7.7100 18 6 5.5189 -0.8221 -7.3977 19 1 5.3580 -1.4259 -6.5168 20 6 6.6198 -1.0566 -8.2074 21 7 6.8160 -0.3208 -9.2801 22 14 7.8243 -2.4173 -7.7750 23 1 7.3925 -3.6837 -8.4190 24 1 9.1792 -2.0518 -8.2605 25 1 7.8588 -2.5982 -6.3014 26 6 3.6385 -0.2466 -5.5963 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6053 -0.2618 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 3.9995 -1.0727 0.4261 33 1 3.8531 0.4370 1.3574 34 1 3.6402 -0.8760 3.4506 35 1 3.7865 -2.3852 2.5186 36 1 5.8922 -1.6713 3.3906 37 1 2.2491 -1.6318 -1.1526 38 1 2.9029 -1.5719 -3.3962 39 1 0.8352 1.1299 -4.2977 40 1 0.8732 2.2934 -6.4648 41 1 2.6730 1.8381 -8.0789 42 1 7.5864 -0.4846 -9.8463 43 1 4.4138 -0.9580 -5.3528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088361636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:38 Heat of formation + Delta-G solvation = -89.950104 kcal Electronic energy + Delta-G solvation = -24733.494999 eV Core-core repulsion = 20972.330406 eV Total energy + Delta-G solvation = -3761.164593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41747 -38.85619 -37.78895 -36.84540 -35.93700 -34.15880 -32.84390 -32.18976 -30.67573 -29.11910 -28.23851 -26.29906 -25.27031 -22.94190 -21.89674 -21.74981 -20.97323 -20.41767 -18.65421 -17.84148 -17.71841 -17.26618 -16.42741 -15.75180 -15.37654 -15.05809 -14.91478 -14.61185 -14.35845 -14.15095 -13.87797 -13.76539 -13.52583 -13.31456 -13.03412 -12.91553 -12.48935 -12.26466 -11.76721 -11.62805 -11.59518 -11.49177 -11.34099 -11.11325 -11.00880 -10.90274 -10.77358 -10.43553 -10.34508 -9.97973 -9.60939 -9.41733 -9.16378 -8.77528 -7.66363 -7.09403 -6.41949 -4.01466 2.11193 2.44467 2.72761 3.13238 3.14373 3.19015 3.36983 3.74914 3.98326 4.24322 4.48619 4.56128 4.65571 4.77267 4.90683 4.98040 5.09031 5.13378 5.23000 5.32421 5.35675 5.39158 5.51385 5.67688 5.73480 5.85168 5.92386 6.03473 6.06004 6.13872 6.29983 6.31594 6.45989 6.61096 6.84899 7.05573 7.14878 7.25614 7.32905 7.38015 7.47400 7.87562 8.02385 8.07863 8.69621 9.03618 9.74818 10.76297 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.003285 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.364432 B = 8521.221048 C =10552.625164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.123 4.123 6 C 0.076 3.924 7 O -0.574 6.574 8 N -0.742 5.742 9 C 0.704 3.296 10 O -0.570 6.570 11 N -0.683 5.683 12 C 0.200 3.800 13 C -0.204 4.204 14 C -0.063 4.063 15 C -0.203 4.203 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.257 4.257 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.379 0.621 37 H 0.394 0.606 38 H 0.402 0.598 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 -5.305 22.449 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.056 3.944 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.161 4.161 6 C -0.002 4.002 7 O -0.380 6.380 8 N -0.399 5.399 9 C 0.404 3.596 10 O -0.446 6.446 11 N -0.330 5.330 12 C 0.106 3.894 13 C -0.225 4.225 14 C -0.082 4.082 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.279 4.279 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.228 0.772 38 H 0.236 0.764 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.555 -3.765 21.490 23.818 hybrid contribution 1.021 -2.009 0.926 2.436 sum -8.534 -5.774 22.415 24.670 Atomic orbital electron populations 1.22205 0.95283 1.02030 1.02752 1.20780 0.93735 0.97472 0.82402 0.89123 1.21818 0.95062 1.01396 0.97847 1.21543 0.94815 1.01973 0.97752 1.22202 0.81052 0.98925 0.98035 1.86523 1.20442 1.80301 1.50687 1.45225 1.72093 1.13482 1.09056 1.15910 0.78471 0.85117 0.80081 1.90949 1.55850 1.13782 1.84042 1.42606 1.67446 1.16399 1.06578 1.17167 0.94114 0.94882 0.83227 1.20527 1.00594 1.03204 0.98159 1.20516 0.96994 0.97882 0.92795 1.20231 0.96571 1.03898 1.01543 1.19068 0.89150 0.92258 0.88048 1.84018 1.34109 1.50194 1.39719 1.21263 1.04075 1.09442 1.11974 0.89295 1.25266 0.97121 0.98667 0.95443 1.70040 1.28510 1.38023 1.13238 0.85737 0.79207 0.79738 0.78862 1.19923 1.20266 1.19312 1.20795 1.01052 1.09732 0.96352 0.91738 0.91649 0.92603 0.90065 0.91163 0.90879 0.90909 0.93757 0.93779 0.77452 0.77235 0.76404 0.86415 0.86685 0.86432 0.92058 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.16 1.47 2.57 -67.93 -0.17 1.29 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.12 -0.76 4.75 -26.73 -0.13 -0.89 16 5 C -0.12 -1.00 5.47 -26.73 -0.15 -1.14 16 6 C 0.08 0.52 7.05 37.15 0.26 0.78 16 7 O -0.57 -5.03 13.66 -35.23 -0.48 -5.51 16 8 N -0.74 -7.73 4.53 -58.68 -0.27 -8.00 16 9 C 0.70 10.76 8.25 -86.92 -0.72 10.05 16 10 O -0.57 -10.95 13.80 5.28 0.07 -10.88 16 11 N -0.68 -10.62 5.34 -14.24 -0.08 -10.70 16 12 C 0.20 3.93 6.24 -83.71 -0.52 3.41 16 13 C -0.20 -4.03 8.66 -39.34 -0.34 -4.37 16 14 C -0.06 -1.22 10.03 -39.64 -0.40 -1.62 16 15 C -0.20 -4.45 9.99 -39.36 -0.39 -4.84 16 16 C 0.17 4.17 6.64 -39.13 -0.26 3.91 16 17 O -0.18 -5.10 9.76 0.06 0.00 -5.10 16 18 C -0.39 -10.97 9.44 30.88 0.29 -10.67 16 19 H 0.09 2.29 5.29 -52.48 -0.28 2.01 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 22 Si 0.94 20.56 29.55 -169.99 -5.02 15.53 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 26 C -0.26 -5.70 9.05 -39.21 -0.35 -6.06 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.38 1.50 9.12 45.56 0.42 1.92 16 37 H 0.39 3.02 8.62 -40.82 -0.35 2.67 16 38 H 0.40 4.91 8.84 -40.82 -0.36 4.54 16 39 H 0.12 2.29 6.53 -52.49 -0.34 1.95 16 40 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.13 2.80 5.71 -52.49 -0.30 2.50 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -35.69 363.77 -7.53 -43.23 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.38 Total: 10.88 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.62 Total: -10.20 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.42 Total: -43.44 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.41 Total: -21.48 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.69 -7.53 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088361636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.724 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds