Wall clock time and date at job start Tue Mar 31 2020 09:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47531 * 2 1 4 4 C 1.53000 * 109.47439 * 239.99460 * 2 1 3 5 5 C 1.53003 * 109.47148 * 175.00395 * 4 2 1 6 6 C 1.53001 * 109.46794 * 179.97438 * 5 4 2 7 7 O 1.42902 * 109.46537 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46653 * 119.99419 * 2 1 3 9 9 C 1.34774 * 120.00266 * 274.99640 * 8 2 1 10 10 O 1.21589 * 119.99975 * 0.02562 * 9 8 2 11 11 N 1.34775 * 120.00293 * 179.97438 * 9 8 2 12 12 C 1.39946 * 120.00237 * 174.73908 * 11 9 8 13 13 C 1.38959 * 120.03366 * 326.18506 * 12 11 9 14 14 C 1.38160 * 120.06140 * 179.71488 * 13 12 11 15 15 C 1.38170 * 120.14234 * 0.55550 * 14 13 12 16 16 C 1.38909 * 120.06494 * 359.72208 * 15 14 13 17 17 O 1.35754 * 120.02880 * 179.97438 * 16 15 14 18 18 C 1.34836 * 116.99859 * 185.92371 * 17 16 15 19 19 H 1.08007 * 119.99750 * 5.40951 * 18 17 16 20 20 C 1.38647 * 120.00279 * 185.40593 * 18 17 16 21 21 N 1.31559 * 119.99590 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00266 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46904 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47227 * 120.00319 * 22 20 18 25 25 H 1.48498 * 109.46953 * 240.00279 * 22 20 18 26 26 C 1.38702 * 120.03375 * 146.45589 * 12 11 9 27 27 H 1.08994 * 109.47536 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47368 * 300.01018 * 1 2 3 29 29 H 1.09006 * 109.46954 * 60.00417 * 1 2 3 30 30 H 1.08994 * 109.46806 * 55.00090 * 4 2 1 31 31 H 1.09005 * 109.46657 * 295.00139 * 4 2 1 32 32 H 1.08994 * 109.46796 * 59.99938 * 5 4 2 33 33 H 1.08996 * 109.46691 * 300.00131 * 5 4 2 34 34 H 1.08999 * 109.47144 * 300.00105 * 6 5 4 35 35 H 1.09004 * 109.46803 * 59.99982 * 6 5 4 36 36 H 0.96701 * 113.99265 * 180.02562 * 7 6 5 37 37 H 0.97000 * 120.00219 * 95.00366 * 8 2 1 38 38 H 0.97002 * 119.99955 * 354.75431 * 11 9 8 39 39 H 1.07998 * 119.96825 * 359.97438 * 13 12 11 40 40 H 1.08003 * 119.92778 * 180.25376 * 14 13 12 41 41 H 1.07997 * 119.96531 * 179.69935 * 15 14 13 42 42 H 0.97006 * 119.99852 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.07109 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3135 6 6 4.0750 -1.3354 -2.5623 7 8 5.4991 -1.2340 -2.6227 8 7 2.0182 -0.6905 1.1963 9 6 2.1469 -0.0181 2.3572 10 8 1.8574 1.1616 2.4118 11 7 2.5956 -0.6535 3.4578 12 6 2.8341 0.0672 4.6335 13 6 3.2981 1.3753 4.5654 14 6 3.5281 2.0893 5.7257 15 6 3.3087 1.5019 6.9569 16 6 2.8505 0.1927 7.0315 17 8 2.6357 -0.3839 8.2416 18 6 2.3098 -1.6923 8.2470 19 1 2.3154 -2.2540 7.3245 20 6 1.9676 -2.3167 9.4367 21 7 1.9604 -1.6323 10.5603 22 14 1.5168 -4.1294 9.4443 23 1 1.6007 -4.6661 8.0622 24 1 2.4586 -4.8701 10.3216 25 1 0.1321 -4.2930 9.9550 26 6 2.6130 -0.5253 5.8680 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6055 -0.2619 -2.1369 31 1 1.7516 -1.7716 -1.2053 32 1 3.9994 -1.0729 -0.4257 33 1 3.8532 0.4368 -1.3572 34 1 3.7865 -2.3856 -2.5182 35 1 3.6404 -0.8762 -3.4503 36 1 5.8921 -1.6701 -3.3911 37 1 2.2489 -1.6317 1.1529 38 1 2.7534 -1.6103 3.4351 39 1 3.4750 1.8356 3.6046 40 1 3.8848 3.1072 5.6702 41 1 3.4941 2.0610 7.8620 42 1 1.7206 -2.0690 11.3926 43 1 2.2561 -1.5431 5.9235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088361637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:42 Heat of formation + Delta-G solvation = -90.016934 kcal Electronic energy + Delta-G solvation = -24686.945473 eV Core-core repulsion = 20925.777982 eV Total energy + Delta-G solvation = -3761.167491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.42515 -38.85654 -37.81067 -36.85918 -35.94024 -34.16384 -32.86028 -32.19300 -30.67498 -29.11469 -28.24107 -26.30812 -25.27410 -22.94207 -21.91884 -21.75391 -20.98103 -20.41804 -18.65750 -17.84430 -17.74112 -17.24616 -16.46514 -15.79982 -15.37213 -15.09464 -14.83353 -14.70184 -14.22940 -14.10381 -14.06469 -13.72407 -13.52735 -13.32092 -13.01683 -12.92965 -12.42144 -12.35501 -11.76662 -11.64296 -11.61419 -11.48192 -11.38144 -11.11995 -11.02891 -10.90009 -10.75681 -10.43037 -10.37953 -9.98390 -9.61352 -9.42071 -9.15493 -8.78341 -7.65843 -7.08996 -6.42528 -4.01975 2.11363 2.44740 2.72262 3.12147 3.13054 3.18644 3.36872 3.72019 3.97401 4.23850 4.47297 4.54113 4.65547 4.76016 4.88660 4.96763 5.07486 5.12862 5.23158 5.32399 5.35472 5.38163 5.52078 5.67184 5.72861 5.84199 5.90169 6.05344 6.07111 6.14010 6.30016 6.31280 6.46045 6.61155 6.84915 7.05584 7.15103 7.21531 7.32845 7.38623 7.47291 7.87791 8.01943 8.07726 8.69145 9.03107 9.74637 10.75824 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.002785 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.317478 B =10052.107824 C =10640.703306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.162 3.838 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.122 4.122 6 C 0.075 3.925 7 O -0.575 6.575 8 N -0.742 5.742 9 C 0.704 3.296 10 O -0.570 6.570 11 N -0.683 5.683 12 C 0.200 3.800 13 C -0.204 4.204 14 C -0.063 4.063 15 C -0.203 4.203 16 C 0.169 3.831 17 O -0.178 6.178 18 C -0.390 4.390 19 H 0.090 0.910 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.258 4.258 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.379 0.621 37 H 0.394 0.606 38 H 0.402 0.598 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -2.439 -25.274 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.057 3.943 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.160 4.160 6 C -0.003 4.003 7 O -0.380 6.380 8 N -0.399 5.399 9 C 0.404 3.596 10 O -0.446 6.446 11 N -0.330 5.330 12 C 0.106 3.894 13 C -0.225 4.225 14 C -0.082 4.082 15 C -0.223 4.223 16 C 0.115 3.885 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.280 4.280 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.226 0.774 37 H 0.228 0.772 38 H 0.236 0.764 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.695 -0.974 -24.251 24.281 hybrid contribution -0.140 -2.325 -0.612 2.409 sum 0.555 -3.299 -24.863 25.087 Atomic orbital electron populations 1.22214 0.95286 1.02101 1.02807 1.20778 0.93770 0.97399 0.82372 0.89131 1.21821 0.95024 1.01445 0.97859 1.21536 0.94846 1.01901 0.97705 1.22215 0.80989 0.98976 0.98075 1.86514 1.20506 1.80339 1.50664 1.45233 1.72179 1.13600 1.08855 1.15907 0.78188 0.85295 0.80184 1.90945 1.55497 1.14115 1.84056 1.42606 1.69038 1.11371 1.09946 1.17174 0.96727 0.92059 0.83448 1.20563 1.08872 0.94560 0.98524 1.20524 0.97880 0.98380 0.91370 1.20236 1.09915 0.94287 0.97835 1.19065 0.92055 0.91781 0.85602 1.84024 1.75661 1.25454 1.22971 1.21306 1.47593 0.81991 0.95771 0.89264 1.25271 0.96698 1.00272 0.94324 1.70050 1.44803 1.36467 0.98487 0.85664 0.78423 0.80706 0.78681 1.19251 1.20171 1.20214 1.20776 1.13811 1.02832 0.90574 0.92573 0.91600 0.91728 0.90053 0.91146 0.90892 0.90938 0.93741 0.93737 0.77447 0.77235 0.76405 0.86266 0.86676 0.86435 0.92119 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.16 1.47 2.57 -67.93 -0.17 1.29 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 4 C -0.12 -0.74 4.75 -26.73 -0.13 -0.87 16 5 C -0.12 -0.92 5.47 -26.73 -0.15 -1.07 16 6 C 0.08 0.48 7.05 37.16 0.26 0.74 16 7 O -0.57 -4.63 13.66 -35.23 -0.48 -5.11 16 8 N -0.74 -7.71 4.53 -58.67 -0.27 -7.98 16 9 C 0.70 10.73 8.26 -86.92 -0.72 10.01 16 10 O -0.57 -10.90 13.72 5.29 0.07 -10.83 16 11 N -0.68 -10.60 5.35 -14.24 -0.08 -10.68 16 12 C 0.20 3.93 6.27 -83.71 -0.52 3.41 16 13 C -0.20 -4.06 8.65 -39.34 -0.34 -4.40 16 14 C -0.06 -1.22 10.03 -39.64 -0.40 -1.62 16 15 C -0.20 -4.46 9.99 -39.36 -0.39 -4.85 16 16 C 0.17 4.17 6.64 -39.13 -0.26 3.91 16 17 O -0.18 -5.10 9.76 0.02 0.00 -5.10 16 18 C -0.39 -10.89 9.44 30.88 0.29 -10.60 16 19 H 0.09 2.29 5.30 -52.48 -0.28 2.02 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 22 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 C -0.26 -5.69 9.04 -39.21 -0.35 -6.05 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.38 1.26 9.12 45.56 0.42 1.68 16 37 H 0.39 3.01 8.62 -40.82 -0.35 2.66 16 38 H 0.40 4.90 8.83 -40.82 -0.36 4.54 16 39 H 0.12 2.35 6.45 -52.49 -0.34 2.01 16 40 H 0.12 1.88 8.06 -52.48 -0.42 1.45 16 41 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.13 2.78 5.72 -52.49 -0.30 2.48 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -35.53 363.64 -7.53 -43.07 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.37 Total: 10.65 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.63 Total: -10.25 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.42 Total: -43.31 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.41 Total: -21.05 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.53 -7.53 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088361637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.948 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds