Wall clock time and date at job start Tue Mar 31 2020 09:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47275 * 2 1 4 4 O 1.42907 * 109.46753 * 119.99575 * 2 1 3 5 5 C 1.52998 * 109.47146 * 239.99393 * 2 1 3 6 6 N 1.46499 * 109.46901 * 180.02562 * 5 2 1 7 7 C 1.46505 * 120.00323 * 270.00197 * 6 5 2 8 8 C 1.34782 * 120.00406 * 90.00251 * 6 5 2 9 9 O 1.21591 * 119.99323 * 359.97438 * 8 6 5 10 10 N 1.34774 * 120.00403 * 180.02562 * 8 6 5 11 11 C 1.46498 * 119.99933 * 180.02562 * 10 8 6 12 12 C 1.50699 * 109.47005 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.97666 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99513 * 12 11 10 27 27 H 1.09002 * 109.47892 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47634 * 300.00465 * 1 2 3 29 29 H 1.09001 * 109.46947 * 60.00377 * 1 2 3 30 30 H 0.96708 * 113.99610 * 59.99932 * 4 2 1 31 31 H 1.08996 * 109.47164 * 60.00988 * 5 2 1 32 32 H 1.09002 * 109.47381 * 300.00120 * 5 2 1 33 33 H 1.09002 * 109.47143 * 270.00406 * 7 6 5 34 34 H 1.09004 * 109.47012 * 29.99748 * 7 6 5 35 35 H 1.08993 * 109.47336 * 149.99910 * 7 6 5 36 36 H 0.97001 * 119.99467 * 359.97438 * 10 8 6 37 37 H 1.08993 * 109.47130 * 59.99768 * 11 10 8 38 38 H 1.09003 * 109.47080 * 299.99631 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 42 42 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.0399 -0.7214 -1.2491 6 7 3.5049 -0.7219 -1.2488 7 6 4.2381 0.3767 -1.8829 8 6 4.1784 -1.7330 -0.6651 9 8 3.5700 -2.6445 -0.1384 10 7 5.5262 -1.7332 -0.6643 11 6 6.2581 -2.8325 -0.0304 12 6 7.7398 -2.5945 -0.1676 13 6 8.4193 -3.0844 -1.2684 14 6 9.7790 -2.8685 -1.3976 15 6 10.4617 -2.1568 -0.4306 16 6 9.7836 -1.6686 0.6784 17 8 10.4530 -0.9741 1.6336 18 6 11.7932 -0.8963 1.5078 19 1 12.2780 -1.3041 0.6332 20 6 12.5489 -0.2927 2.5014 21 7 13.8565 -0.2173 2.3789 22 14 11.7103 0.4120 4.0145 23 1 11.6210 -0.6349 5.0638 24 1 12.4989 1.5610 4.5275 25 1 10.3443 0.8704 3.6551 26 6 8.4179 -1.8879 0.8058 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.7208 -1.5952 1.2330 31 1 1.6768 -0.2076 -2.1392 32 1 1.6766 -1.7491 -1.2491 33 1 4.4199 0.1354 -2.9302 34 1 3.6493 1.2917 -1.8178 35 1 5.1903 0.5203 -1.3725 36 1 6.0115 -1.0058 -1.0842 37 1 5.9949 -3.7720 -0.5161 38 1 5.9942 -2.8832 1.0260 39 1 7.8867 -3.6367 -2.0285 40 1 10.3067 -3.2527 -2.2581 41 1 11.5227 -1.9841 -0.5347 42 1 14.3852 0.2052 3.0738 43 1 7.8871 -1.5062 1.6654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091220751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:57 Heat of formation + Delta-G solvation = -76.392049 kcal Electronic energy + Delta-G solvation = -24975.298928 eV Core-core repulsion = 21214.722257 eV Total energy + Delta-G solvation = -3760.576671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.33425 -39.27312 -37.79151 -36.91561 -35.30232 -34.49665 -32.43951 -31.66673 -30.65267 -29.39459 -27.75481 -26.60759 -25.38972 -24.68151 -22.06148 -21.80885 -20.72320 -20.04558 -18.50168 -17.73308 -17.12631 -16.91889 -16.28833 -15.78857 -15.54631 -15.30325 -14.96683 -14.45069 -14.28299 -14.07835 -13.91467 -13.83158 -13.43530 -13.36882 -12.90737 -12.63857 -12.62770 -12.47974 -12.38586 -12.15310 -11.98850 -11.89115 -11.43771 -11.22139 -10.93134 -10.87137 -10.74751 -10.46477 -10.20603 -10.10809 -9.45999 -9.06350 -8.92525 -8.58303 -8.33420 -7.47752 -6.46141 -4.13438 1.78890 2.15408 2.67567 3.19825 3.24282 3.24600 3.38376 3.92596 4.20398 4.25846 4.44279 4.50826 4.67879 4.76677 4.78311 4.90411 4.99089 5.04147 5.14516 5.17185 5.37155 5.39242 5.42109 5.45303 5.66908 5.68775 5.76433 5.80116 5.88997 6.01721 6.15680 6.26841 6.43542 6.55082 6.68642 6.82852 7.01340 7.12929 7.20914 7.50144 7.59438 7.73366 7.93857 7.97856 8.61207 8.88915 9.50181 10.61292 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.002940 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.801148 B = 9523.096551 C =10490.551613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.094 0.906 4 O -0.553 6.553 5 C 0.102 3.898 6 N -0.631 5.631 7 C 0.078 3.922 8 C 0.713 3.287 9 O -0.593 6.593 10 N -0.737 5.737 11 C 0.187 3.813 12 C -0.075 4.075 13 C -0.186 4.186 14 C -0.078 4.078 15 C -0.213 4.213 16 C 0.156 3.844 17 O -0.216 6.216 18 C -0.391 4.391 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.878 5.878 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.170 4.170 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.379 0.621 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.398 0.602 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.280 0.720 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.007 0.650 -9.624 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.023 3.977 3 H 0.112 0.888 4 O -0.359 6.359 5 C -0.022 4.022 6 N -0.368 5.368 7 C -0.065 4.065 8 C 0.414 3.586 9 O -0.472 6.472 10 N -0.393 5.393 11 C 0.063 3.937 12 C -0.075 4.075 13 C -0.205 4.205 14 C -0.096 4.096 15 C -0.232 4.232 16 C 0.104 3.896 17 O -0.121 6.121 18 C -0.466 4.466 19 H 0.124 0.876 20 C -0.139 4.139 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.190 4.190 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.015 0.747 -8.815 23.726 hybrid contribution 0.038 0.279 0.144 0.316 sum -21.977 1.025 -8.672 23.648 Atomic orbital electron populations 1.22455 0.96174 1.02752 1.02779 1.22310 0.92654 0.96935 0.85766 0.88831 1.86579 1.77309 1.29442 1.42606 1.22077 0.79159 1.02716 0.98283 1.46830 1.06012 1.23408 1.60583 1.21738 0.97326 0.89861 0.97603 1.15751 0.81820 0.82080 0.78920 1.90838 1.67861 1.37451 1.51006 1.45371 1.04301 1.27399 1.62200 1.19983 0.86730 0.88812 0.98156 1.19296 0.93638 0.99401 0.95195 1.20556 0.94554 1.06460 0.98948 1.20803 0.93942 0.97086 0.97802 1.21363 1.01553 1.04444 0.95846 1.19063 0.91313 0.90504 0.88723 1.83578 1.22009 1.62565 1.43920 1.20760 0.77361 1.40046 1.08475 0.87602 1.24467 0.94689 0.96306 0.98465 1.69643 1.04214 1.42514 1.35199 0.86184 0.80207 0.78868 0.81679 1.19807 1.20752 1.18344 1.20102 0.92108 1.05522 1.01247 0.92082 0.91586 0.91639 0.77233 0.90001 0.89501 0.92582 0.90977 0.91139 0.76638 0.91126 0.91005 0.87309 0.87000 0.84853 0.90983 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.53 37.15 0.35 -0.79 16 2 C 0.08 0.72 3.86 -26.73 -0.10 0.62 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 O -0.55 -6.74 12.15 -43.99 -0.53 -7.27 16 5 C 0.10 0.85 5.15 -4.04 -0.02 0.83 16 6 N -0.63 -6.60 2.83 -187.35 -0.53 -7.13 16 7 C 0.08 0.59 10.20 59.85 0.61 1.21 16 8 C 0.71 9.87 7.79 -86.92 -0.68 9.20 16 9 O -0.59 -9.80 14.70 -3.47 -0.05 -9.86 16 10 N -0.74 -9.76 5.41 -66.42 -0.36 -10.12 16 11 C 0.19 2.69 5.80 -5.20 -0.03 2.66 16 12 C -0.07 -1.21 5.25 -104.65 -0.55 -1.75 16 13 C -0.19 -2.91 9.70 -39.53 -0.38 -3.30 16 14 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 15 C -0.21 -4.38 9.17 -39.39 -0.36 -4.74 16 16 C 0.16 3.47 6.65 -39.11 -0.26 3.21 16 17 O -0.22 -5.56 8.59 0.05 0.00 -5.56 16 18 C -0.39 -10.80 9.95 30.89 0.31 -10.49 16 19 H 0.11 2.97 5.44 -52.49 -0.29 2.69 16 20 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.04 13.96 55.48 0.77 -24.26 16 22 Si 0.91 21.50 28.62 -169.99 -4.86 16.63 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 26 C -0.17 -3.24 9.65 -39.40 -0.38 -3.62 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.38 4.17 8.44 45.56 0.38 4.56 16 31 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.09 0.82 7.42 -51.93 -0.39 0.44 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.41 8.07 -51.93 -0.42 0.00 16 35 H 0.07 0.57 6.36 -51.93 -0.33 0.24 16 36 H 0.40 4.74 6.19 -40.82 -0.25 4.49 16 37 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 38 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 42 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -32.01 360.80 -7.47 -39.48 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.36 Total: 9.66 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.99 Total: -7.00 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.11 Total: -41.51 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.59 Total: -22.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.63 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.01 -7.47 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091220751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.913 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds