Wall clock time and date at job start Tue Mar 31 2020 09:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47275 * 2 1 4 4 O 1.42907 * 109.46753 * 119.99575 * 2 1 3 5 5 C 1.52998 * 109.47146 * 239.99393 * 2 1 3 6 6 N 1.46499 * 109.46901 * 180.02562 * 5 2 1 7 7 C 1.46505 * 120.00323 * 270.00197 * 6 5 2 8 8 C 1.34782 * 120.00406 * 90.00251 * 6 5 2 9 9 O 1.21591 * 119.99323 * 359.97438 * 8 6 5 10 10 N 1.34774 * 120.00403 * 180.02562 * 8 6 5 11 11 C 1.46498 * 119.99933 * 180.02562 * 10 8 6 12 12 C 1.50699 * 109.47005 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.97666 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96947 * 89.99513 * 12 11 10 27 27 H 1.09002 * 109.47892 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47634 * 300.00465 * 1 2 3 29 29 H 1.09001 * 109.46947 * 60.00377 * 1 2 3 30 30 H 0.96708 * 113.99610 * 59.99932 * 4 2 1 31 31 H 1.08996 * 109.47164 * 60.00988 * 5 2 1 32 32 H 1.09002 * 109.47381 * 300.00120 * 5 2 1 33 33 H 1.09002 * 109.47143 * 270.00406 * 7 6 5 34 34 H 1.09004 * 109.47012 * 29.99748 * 7 6 5 35 35 H 1.08993 * 109.47336 * 149.99910 * 7 6 5 36 36 H 0.97001 * 119.99467 * 359.97438 * 10 8 6 37 37 H 1.08993 * 109.47130 * 59.99768 * 11 10 8 38 38 H 1.09003 * 109.47080 * 299.99631 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 42 42 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.03594 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.0399 -0.7214 -1.2491 6 7 3.5049 -0.7219 -1.2488 7 6 4.2381 0.3767 -1.8829 8 6 4.1784 -1.7330 -0.6651 9 8 3.5700 -2.6445 -0.1384 10 7 5.5262 -1.7332 -0.6643 11 6 6.2581 -2.8325 -0.0304 12 6 7.7398 -2.5945 -0.1676 13 6 8.4193 -3.0844 -1.2684 14 6 9.7790 -2.8685 -1.3976 15 6 10.4617 -2.1568 -0.4306 16 6 9.7836 -1.6686 0.6784 17 8 10.4530 -0.9741 1.6336 18 6 11.7932 -0.8963 1.5078 19 1 12.2780 -1.3041 0.6332 20 6 12.5489 -0.2927 2.5014 21 7 13.8565 -0.2173 2.3789 22 14 11.7103 0.4120 4.0145 23 1 11.6210 -0.6349 5.0638 24 1 12.4989 1.5610 4.5275 25 1 10.3443 0.8704 3.6551 26 6 8.4179 -1.8879 0.8058 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.7208 -1.5952 1.2330 31 1 1.6768 -0.2076 -2.1392 32 1 1.6766 -1.7491 -1.2491 33 1 4.4199 0.1354 -2.9302 34 1 3.6493 1.2917 -1.8178 35 1 5.1903 0.5203 -1.3725 36 1 6.0115 -1.0058 -1.0842 37 1 5.9949 -3.7720 -0.5161 38 1 5.9942 -2.8832 1.0260 39 1 7.8867 -3.6367 -2.0285 40 1 10.3067 -3.2527 -2.2581 41 1 11.5227 -1.9841 -0.5347 42 1 14.3852 0.2052 3.0738 43 1 7.8871 -1.5062 1.6654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091220751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:56 Heat of formation + Delta-G solvation = -98.977199 kcal Electronic energy + Delta-G solvation = -24976.278294 eV Core-core repulsion = 21214.722257 eV Total energy + Delta-G solvation = -3761.556037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36018 -40.84222 -38.84851 -38.29594 -36.18895 -35.70212 -34.45582 -32.56783 -31.82681 -30.95276 -28.39863 -27.72118 -27.14266 -25.79727 -23.33921 -22.77619 -22.26612 -21.02702 -19.80237 -19.40233 -18.60277 -17.84167 -17.21813 -16.86902 -16.76314 -16.50460 -16.32387 -15.86673 -15.67468 -15.34083 -15.12413 -15.01813 -14.67981 -14.45857 -14.22284 -14.02412 -13.83783 -13.46975 -13.32630 -13.14300 -13.10948 -12.91588 -12.60503 -12.52298 -12.47008 -12.36494 -11.95078 -11.88126 -11.33581 -11.29824 -11.12866 -10.92092 -10.14767 -9.80826 -9.39798 -9.13039 -8.50806 -6.23316 0.33418 0.64203 1.31016 1.34334 1.50817 1.75935 2.22172 2.26894 2.72271 2.96851 3.02563 3.23224 3.56536 3.76681 3.88486 4.06125 4.14616 4.17565 4.27799 4.33373 4.42176 4.46932 4.49860 4.61858 4.65129 4.71397 4.80076 4.87292 4.88437 4.93643 5.12734 5.18321 5.27828 5.36289 5.46894 5.54669 5.63175 5.68781 5.74615 5.88758 5.94166 6.18925 6.80728 6.83903 6.97781 7.58105 7.59834 8.60627 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.002940 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.801148 B = 9523.096551 C =10490.551613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 H 0.095 0.905 4 O -0.581 6.581 5 C 0.101 3.899 6 N -0.629 5.629 7 C 0.072 3.928 8 C 0.704 3.296 9 O -0.625 6.625 10 N -0.734 5.734 11 C 0.194 3.806 12 C -0.060 4.060 13 C -0.157 4.157 14 C -0.073 4.073 15 C -0.227 4.227 16 C 0.120 3.880 17 O -0.246 6.246 18 C -0.398 4.398 19 H 0.085 0.915 20 C 0.012 3.988 21 N -0.922 5.922 22 Si 0.967 3.033 23 H -0.268 1.268 24 H -0.267 1.267 25 H -0.264 1.264 26 C -0.170 4.170 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.380 0.620 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.405 0.595 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.285 0.715 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.889 0.561 -11.486 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 H 0.113 0.887 4 O -0.388 6.388 5 C -0.022 4.022 6 N -0.365 5.365 7 C -0.070 4.070 8 C 0.406 3.594 9 O -0.506 6.506 10 N -0.391 5.391 11 C 0.071 3.929 12 C -0.061 4.061 13 C -0.176 4.176 14 C -0.091 4.091 15 C -0.247 4.247 16 C 0.071 3.929 17 O -0.153 6.153 18 C -0.474 4.474 19 H 0.102 0.898 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.192 1.192 25 H -0.189 1.189 26 C -0.190 4.190 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.228 0.772 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.242 0.758 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.129 0.871 42 H 0.094 0.906 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.935 0.675 -10.731 27.154 hybrid contribution 0.690 0.167 0.458 0.845 sum -24.245 0.842 -10.273 26.345 Atomic orbital electron populations 1.22370 0.94260 1.03133 1.03579 1.22485 0.94206 0.96522 0.84793 0.88733 1.86543 1.78073 1.29711 1.44482 1.22236 0.77959 1.02492 0.99557 1.46961 1.06912 1.23005 1.59614 1.21952 0.97144 0.89815 0.98117 1.15968 0.81809 0.82578 0.79058 1.90815 1.68420 1.38955 1.52448 1.45225 1.04356 1.27316 1.62202 1.19836 0.85272 0.89806 0.98029 1.19476 0.94593 0.97707 0.94314 1.21030 0.93918 1.03968 0.98696 1.21149 0.94650 0.95627 0.97626 1.21405 1.00882 1.05625 0.96743 1.19555 0.92484 0.91832 0.89029 1.83525 1.20792 1.65239 1.45787 1.20714 0.78614 1.40040 1.08029 0.89770 1.25223 0.95269 0.96941 1.01217 1.69720 1.05372 1.44568 1.36580 0.85271 0.78884 0.78603 0.78304 1.19297 1.19170 1.18887 1.20257 0.90881 1.05700 1.02151 0.91927 0.92201 0.89380 0.77156 0.86541 0.90723 0.90860 0.88792 0.91871 0.75804 0.89866 0.92058 0.83311 0.83660 0.87072 0.90577 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.53 71.98 0.69 -1.11 16 2 C 0.08 1.23 3.86 30.59 0.12 1.35 16 3 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 4 O -0.58 -13.83 12.15 -140.60 -1.71 -15.54 16 5 C 0.10 1.43 5.15 86.38 0.44 1.88 16 6 N -0.63 -11.58 2.83 -864.90 -2.45 -14.03 16 7 C 0.07 0.87 10.20 127.77 1.30 2.17 16 8 C 0.70 18.18 7.79 179.05 1.39 19.57 16 9 O -0.63 -19.95 14.70 4.37 0.06 -19.89 16 10 N -0.73 -17.71 5.41 -482.30 -2.61 -20.32 16 11 C 0.19 5.12 5.80 85.63 0.50 5.62 16 12 C -0.06 -1.79 5.25 -19.88 -0.10 -1.90 16 13 C -0.16 -4.29 9.70 22.30 0.22 -4.07 16 14 C -0.07 -2.28 10.04 22.25 0.22 -2.05 16 15 C -0.23 -9.44 9.17 22.39 0.21 -9.23 16 16 C 0.12 5.44 6.65 22.58 0.15 5.59 16 17 O -0.25 -13.18 8.59 -22.74 -0.20 -13.37 16 18 C -0.40 -23.09 9.95 67.92 0.68 -22.41 16 19 H 0.08 5.07 5.44 -2.91 -0.02 5.06 16 20 C 0.01 0.69 5.49 84.83 0.47 1.16 16 21 N -0.92 -54.63 13.96 21.61 0.30 -54.32 16 22 Si 0.97 45.52 28.62 68.60 1.96 47.48 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 26 C -0.17 -6.39 9.65 22.39 0.22 -6.17 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.38 8.41 8.44 -74.05 -0.63 7.78 16 31 H 0.12 0.85 8.07 -2.39 -0.02 0.83 16 32 H 0.07 1.28 7.42 -2.39 -0.02 1.26 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.74 8.07 -2.39 -0.02 0.72 16 35 H 0.06 0.86 6.36 -2.39 -0.02 0.85 16 36 H 0.40 8.59 6.19 -92.71 -0.57 8.01 16 37 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 38 H 0.06 1.78 8.09 -2.39 -0.02 1.76 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.11 5.10 5.64 -2.91 -0.02 5.08 16 42 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -72.75 360.80 1.70 -71.05 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.16 Total: 28.57 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 6.49 Total: -9.62 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -4.76 Total: -88.67 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -1.84 Total: -48.80 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.96 Total: 47.48 kcal Total: -72.75 1.70 -71.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091220751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.932 kcal (2) G-P(sol) polarization free energy of solvation -72.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds