Wall clock time and date at job start Tue Mar 31 2020 10:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47189 * 2 1 4 4 C 1.34904 * 116.99936 * 179.97438 * 3 2 1 5 5 O 1.21617 * 120.00025 * 359.97438 * 4 3 2 6 6 C 1.46471 * 119.99971 * 179.97438 * 4 3 2 7 7 C 1.36635 * 125.99567 * 180.02562 * 6 4 3 8 8 C 1.40314 * 106.70366 * 179.80438 * 7 6 4 9 9 C 1.35173 * 107.12122 * 0.34748 * 8 7 6 10 10 C 1.50702 * 125.60467 * 179.90850 * 9 8 7 11 11 N 1.46899 * 109.47342 * 89.71809 * 10 9 8 12 12 C 1.46895 * 110.99989 * 190.00093 * 11 10 9 13 13 C 1.53241 * 109.33538 * 187.25118 * 12 11 10 14 14 N 1.47082 * 108.52509 * 306.16899 * 13 12 11 15 15 C 1.36935 * 120.87800 * 231.18634 * 14 13 12 16 16 H 1.07994 * 120.00243 * 27.12925 * 15 14 13 17 17 C 1.38815 * 119.99552 * 206.84012 * 15 14 13 18 18 N 1.31614 * 119.99986 * 17.18837 * 17 15 14 19 19 Si 1.86797 * 120.00057 * 197.17547 * 17 15 14 20 20 H 1.48508 * 109.47149 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47196 * 120.00464 * 19 17 15 22 22 H 1.48497 * 109.47565 * 240.00842 * 19 17 15 23 23 C 1.47072 * 118.23374 * 51.45730 * 14 13 12 24 24 C 1.46908 * 110.99894 * 314.30181 * 11 10 9 25 25 O 1.33903 * 108.78420 * 359.64581 * 9 8 7 26 26 H 1.08996 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47171 * 300.00160 * 1 2 3 28 28 H 1.08999 * 109.46563 * 60.00226 * 1 2 3 29 29 H 1.09000 * 109.47171 * 239.99840 * 2 1 3 30 30 H 1.08997 * 109.47032 * 119.99987 * 2 1 3 31 31 H 1.07997 * 126.64962 * 0.03387 * 7 6 4 32 32 H 1.07997 * 126.43865 * 180.22014 * 8 7 6 33 33 H 1.09004 * 109.46889 * 329.71504 * 10 9 8 34 34 H 1.08999 * 109.46899 * 209.71732 * 10 9 8 35 35 H 1.08994 * 109.49506 * 67.29451 * 12 11 10 36 36 H 1.08997 * 109.49438 * 307.21030 * 12 11 10 37 37 H 1.09003 * 109.62622 * 186.45689 * 13 12 11 38 38 H 1.09001 * 109.79122 * 65.97420 * 13 12 11 39 39 H 0.97002 * 120.00194 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.62781 * 68.25550 * 23 14 13 41 41 H 1.09007 * 109.62956 * 188.83247 * 23 14 13 42 42 H 1.09005 * 109.49135 * 292.70628 * 24 11 10 43 43 H 1.09003 * 109.49306 * 52.75396 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3514 1.5456 0.0005 5 8 4.0923 0.5811 0.0015 6 6 3.9113 2.8991 0.0000 7 6 5.2398 3.2186 0.0000 8 6 5.3176 4.6196 -0.0052 9 6 4.0499 5.0886 -0.0002 10 6 3.6521 6.5422 -0.0012 11 7 3.5230 7.0137 -1.3864 12 6 3.3704 8.4740 -1.4334 13 6 3.0586 8.9055 -2.8703 14 7 4.0969 8.3599 -3.7578 15 6 4.7607 9.1674 -4.6424 16 1 4.8751 10.2203 -4.4313 17 6 5.2919 8.6313 -5.8075 18 7 4.8851 7.4552 -6.2358 19 14 6.5836 9.5794 -6.7676 20 1 6.8668 10.8650 -6.0802 21 1 7.8300 8.7760 -6.8471 22 1 6.0814 9.8509 -8.1384 23 6 4.3987 6.9229 -3.6743 24 6 4.6619 6.5704 -2.2017 25 8 3.2056 4.0493 -0.0001 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 6.0692 2.5269 -0.0002 32 1 6.2207 5.2119 -0.0100 33 1 4.4146 7.1278 0.5125 34 1 2.6978 6.6580 0.5125 35 1 4.2954 8.9472 -1.1041 36 1 2.5536 8.7756 -0.7777 37 1 3.0576 9.9937 -2.9337 38 1 2.0833 8.5206 -3.1679 39 1 5.2565 7.0804 -7.0498 40 1 3.5501 6.3483 -4.0455 41 1 5.2842 6.6995 -4.2695 42 1 5.5690 7.0702 -1.8616 43 1 4.7821 5.4916 -2.1026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:43 Heat of formation + Delta-G solvation = -30.554432 kcal Electronic energy + Delta-G solvation = -25472.265028 eV Core-core repulsion = 21713.676025 eV Total energy + Delta-G solvation = -3758.589003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.85328 -40.35876 -38.18964 -36.86217 -34.73431 -33.19283 -32.14587 -31.72892 -30.20995 -29.92837 -27.59444 -25.33207 -23.97918 -22.84581 -22.57564 -22.04098 -21.52071 -20.43167 -19.14802 -18.53067 -17.16107 -17.08614 -16.81617 -16.16046 -15.60597 -15.07411 -14.48675 -14.40914 -14.15048 -14.08535 -13.82524 -13.44376 -13.42437 -13.15480 -13.07762 -13.03647 -12.95063 -12.23446 -12.18369 -11.89221 -11.68788 -11.52955 -11.11849 -11.02195 -10.79969 -10.78222 -10.51132 -10.35270 -10.14540 -10.08643 -9.77966 -9.62328 -8.71921 -8.52423 -7.93145 -6.69040 -5.79290 -3.21044 0.72576 2.09341 2.16168 2.78008 2.83773 3.36276 3.44184 3.46142 4.28458 4.42079 4.49461 4.65796 4.68176 4.74044 4.77080 4.98166 5.21489 5.32548 5.37045 5.38381 5.40321 5.47072 5.50511 5.68369 5.72114 5.76391 5.82975 5.86969 6.06631 6.10456 6.15929 6.21577 6.26475 6.49296 6.64066 6.79946 6.89214 7.19136 7.40740 7.49185 7.58133 7.66333 7.79455 8.41874 9.19495 9.82895 10.41370 11.29423 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.003065 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.900382 B = 9131.856684 C = 9444.107207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.346 6.346 4 C 0.559 3.441 5 O -0.494 6.494 6 C -0.079 4.079 7 C -0.095 4.095 8 C -0.223 4.223 9 C 0.061 3.939 10 C 0.121 3.879 11 N -0.528 5.528 12 C 0.045 3.955 13 C 0.148 3.852 14 N -0.596 5.596 15 C -0.253 4.253 16 H 0.067 0.933 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.179 3.821 24 C 0.027 3.973 25 O -0.139 6.139 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.032 0.968 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.254 0.746 40 H 0.027 0.973 41 H 0.089 0.911 42 H 0.029 0.971 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -10.006 16.069 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.263 6.263 4 C 0.404 3.596 5 O -0.384 6.384 6 C -0.129 4.129 7 C -0.115 4.115 8 C -0.242 4.242 9 C 0.007 3.993 10 C -0.006 4.006 11 N -0.254 5.254 12 C -0.084 4.084 13 C 0.021 3.979 14 N -0.319 5.319 15 C -0.382 4.382 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.053 3.947 24 C -0.101 4.101 25 O -0.034 6.034 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.181 0.819 32 H 0.178 0.822 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.107 0.893 42 H 0.047 0.953 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.042 -10.588 15.702 19.598 hybrid contribution 1.619 0.525 -0.266 1.723 sum -3.423 -10.063 15.437 18.742 Atomic orbital electron populations 1.21819 0.92298 1.03033 1.03908 1.23117 0.95660 0.79524 1.02831 1.86689 1.22986 1.32756 1.83865 1.19124 0.81003 0.86464 0.72995 1.90930 1.60667 1.39753 1.47011 1.20572 0.90348 0.83809 1.18212 1.21937 0.94941 0.96069 0.98562 1.21663 0.97951 0.94184 1.10448 1.22879 0.88167 0.89585 0.98677 1.20783 1.02249 0.84335 0.93264 1.62201 1.43619 1.13032 1.06552 1.22672 0.99441 0.85725 1.00527 1.20973 0.92311 0.96819 0.87754 1.44169 1.40302 1.05243 1.42188 1.19221 1.28570 0.92455 0.97971 0.91554 1.25041 1.00941 0.97533 0.96225 1.70037 1.43065 1.18603 1.22927 0.86235 0.81609 0.79279 0.79714 1.20304 1.21579 1.21696 1.20947 1.00800 0.84090 0.88825 1.23181 0.90076 0.98949 0.97931 1.84120 1.36541 1.13122 1.69567 0.90057 0.91371 0.91128 0.90828 0.90998 0.81881 0.82239 0.91484 0.88895 0.94941 0.91603 0.92364 0.95526 0.93629 0.95536 0.89259 0.95313 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.59 6.20 37.16 0.23 0.82 16 3 O -0.35 -4.54 10.23 -42.49 -0.43 -4.97 16 4 C 0.56 8.00 7.93 34.05 0.27 8.27 16 5 O -0.49 -7.57 16.66 -19.35 -0.32 -7.89 16 6 C -0.08 -1.15 7.18 -36.85 -0.26 -1.42 16 7 C -0.10 -1.25 10.62 -39.38 -0.42 -1.66 16 8 C -0.22 -2.88 9.05 -39.89 -0.36 -3.24 16 9 C 0.06 0.86 5.49 -35.40 -0.19 0.66 16 10 C 0.12 1.62 5.80 -4.98 -0.03 1.59 16 11 N -0.53 -9.10 4.77 -235.47 -1.12 -10.22 16 12 C 0.05 0.76 5.58 -3.70 -0.02 0.74 16 13 C 0.15 3.07 6.69 -3.60 -0.02 3.05 16 14 N -0.60 -14.96 3.03 -171.74 -0.52 -15.48 16 15 C -0.25 -6.89 9.63 -15.06 -0.15 -7.04 16 16 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 17 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 18 N -0.90 -26.26 11.16 55.49 0.62 -25.64 16 19 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.18 4.36 5.45 -3.37 -0.02 4.34 16 24 C 0.03 0.53 4.95 -3.46 -0.02 0.51 16 25 O -0.14 -2.14 10.67 4.76 0.05 -2.09 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.92 8.11 -51.93 -0.42 0.49 16 37 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 2.40 6.12 -51.93 -0.32 2.08 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.22 5.55 -51.93 -0.29 0.93 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -31.73 356.75 -8.56 -40.30 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.48 Total: -1.80 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.70 Total: 5.87 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -1.02 Total: -51.35 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.71 Total: -14.95 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.73 -8.56 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.741 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds