Wall clock time and date at job start Tue Mar 31 2020 10:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99899 * 2 1 4 4 C 1.53007 * 109.47420 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47085 * 64.99941 * 4 3 2 6 6 C 1.46502 * 119.99989 * 90.00128 * 5 4 3 7 7 C 1.50699 * 109.47195 * 91.10200 * 6 5 4 8 8 H 1.08005 * 119.99614 * 4.63136 * 7 6 5 9 9 C 1.37872 * 120.00422 * 184.63607 * 7 6 5 10 10 N 1.31519 * 119.99670 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00163 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47155 * 59.99988 * 11 9 7 13 13 H 1.48506 * 109.47229 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47347 * 299.99902 * 11 9 7 15 15 C 1.34780 * 120.00348 * 270.00579 * 5 4 3 16 16 O 1.21672 * 119.99576 * 5.41881 * 15 5 4 17 17 C 1.46845 * 120.00224 * 185.41876 * 15 5 4 18 18 C 1.36237 * 125.80075 * 8.49582 * 17 15 5 19 19 C 1.41566 * 106.98355 * 179.84931 * 18 17 15 20 20 C 1.46619 * 126.52088 * 180.19145 * 19 18 17 21 21 C 1.50696 * 120.00297 * 180.27864 * 20 19 18 22 22 O 1.21328 * 119.99677 * 0.28874 * 20 19 18 23 23 C 1.38618 * 106.96684 * 0.41119 * 19 18 17 24 24 N 1.34104 * 108.34570 * 359.74422 * 23 19 18 25 25 C 1.46501 * 125.35109 * 179.97438 * 24 23 19 26 26 H 1.08999 * 109.46558 * 299.99105 * 1 2 3 27 27 H 1.08997 * 109.47616 * 59.99504 * 1 2 3 28 28 H 1.09007 * 109.47035 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47329 * 60.00925 * 3 2 1 30 30 H 1.09004 * 109.47663 * 300.00455 * 3 2 1 31 31 H 1.09001 * 109.46716 * 305.00316 * 4 3 2 32 32 H 1.08997 * 109.47739 * 185.00073 * 4 3 2 33 33 H 1.08997 * 109.47109 * 211.10243 * 6 5 4 34 34 H 1.08998 * 109.47092 * 331.09944 * 6 5 4 35 35 H 0.96998 * 119.99953 * 179.97438 * 10 9 7 36 36 H 1.08000 * 126.51060 * 359.97438 * 18 17 15 37 37 H 1.09004 * 109.46595 * 90.00834 * 21 20 19 38 38 H 1.09007 * 109.47212 * 209.99902 * 21 20 19 39 39 H 1.08999 * 109.47490 * 330.00702 * 21 20 19 40 40 H 1.07999 * 125.82590 * 179.72828 * 23 19 18 41 41 H 1.09006 * 109.47163 * 263.89013 * 25 24 23 42 42 H 1.09000 * 109.47069 * 23.88697 * 25 24 23 43 43 H 1.08994 * 109.47227 * 143.88640 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2864 1.4008 -2.4148 7 6 5.7501 1.7589 -2.3991 8 1 6.4006 1.3391 -1.6460 9 6 6.2588 2.6223 -3.3460 10 7 5.4667 3.1331 -4.2632 11 14 8.0730 3.0667 -3.3260 12 1 8.8862 1.8351 -3.4900 13 1 8.3653 4.0042 -4.4400 14 1 8.4100 3.7138 -2.0325 15 6 4.0949 -0.7755 -1.3357 16 8 3.7436 -1.4761 -0.4051 17 6 4.6487 -1.3897 -2.5491 18 6 5.2257 -0.7230 -3.5877 19 6 5.6200 -1.6970 -4.5363 20 6 6.2881 -1.4471 -5.8173 21 6 6.6377 -2.6002 -6.7223 22 8 6.5595 -0.3120 -6.1485 23 6 5.2499 -2.9316 -4.0261 24 7 4.6679 -2.7383 -2.8335 25 6 4.1353 -3.7943 -1.9690 26 1 -0.3632 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6885 1.8465 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9786 2.1765 0.0889 33 1 4.0561 0.8530 -3.3286 34 1 3.6890 2.3117 -2.3770 35 1 5.8245 3.7409 -4.9292 36 1 5.3590 0.3456 -3.6706 37 1 5.8073 -2.7939 -7.4012 38 1 7.5285 -2.3519 -7.2995 39 1 6.8303 -3.4887 -6.1210 40 1 5.4037 -3.8862 -4.5071 41 1 3.0635 -3.8969 -2.1388 42 1 4.6315 -4.7371 -2.1995 43 1 4.3148 -3.5349 -0.9258 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:48 Heat of formation + Delta-G solvation = -42.433494 kcal Electronic energy + Delta-G solvation = -26773.575003 eV Core-core repulsion = 23014.470885 eV Total energy + Delta-G solvation = -3759.104118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04507 -38.70043 -38.02089 -37.14780 -35.21505 -32.73454 -32.37426 -30.84231 -29.69033 -27.89259 -27.28591 -26.15773 -25.94103 -23.05504 -22.91068 -21.89408 -20.49024 -19.12052 -17.64863 -16.71383 -16.39914 -16.12848 -15.90778 -15.33201 -15.09850 -14.92803 -14.61131 -14.45588 -14.23951 -14.15401 -14.10553 -13.47479 -13.24031 -12.81153 -12.30407 -12.23401 -12.20599 -11.99549 -11.89810 -11.81488 -11.66736 -11.49195 -11.42435 -10.95159 -10.80632 -10.67411 -10.14737 -9.74549 -9.69730 -9.32096 -9.16714 -8.90200 -8.53120 -8.11164 -7.77709 -7.55161 -6.12197 -4.19492 1.90962 2.42267 3.10955 3.34883 3.41210 3.43926 3.78444 4.04028 4.16876 4.30229 4.44608 4.79809 5.05829 5.12639 5.22489 5.38764 5.43381 5.47258 5.48071 5.50443 5.64699 5.67588 5.68181 5.74899 5.77895 5.81878 5.87249 5.94487 6.09407 6.27238 6.39357 6.78600 6.80385 6.96995 7.25389 7.31059 7.47794 7.60224 7.68605 7.77613 7.83782 8.07901 8.35167 8.40346 8.84750 9.12497 9.47076 10.92793 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.006892 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.990464 B = 4061.910698 C = 6066.256666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.128 3.872 5 N -0.582 5.582 6 C 0.217 3.783 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.075 3.925 10 N -0.877 5.877 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.278 1.278 15 C 0.591 3.409 16 O -0.567 6.567 17 C -0.069 4.069 18 C -0.076 4.076 19 C -0.281 4.281 20 C 0.414 3.586 21 C -0.193 4.193 22 O -0.457 6.457 23 C 0.056 3.944 24 N -0.404 5.404 25 C 0.068 3.932 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.269 0.731 36 H 0.227 0.773 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.170 0.830 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 -10.713 1.992 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.034 4.034 4 C 0.004 3.996 5 N -0.312 5.312 6 C 0.098 3.902 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.131 4.131 10 N -0.513 5.513 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.203 1.203 15 C 0.381 3.619 16 O -0.450 6.450 17 C -0.178 4.178 18 C -0.098 4.098 19 C -0.289 4.289 20 C 0.292 3.708 21 C -0.251 4.251 22 O -0.332 6.332 23 C -0.086 4.086 24 N -0.077 5.077 25 C -0.073 4.073 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.242 0.758 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.187 0.813 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.105 -10.706 2.408 12.103 hybrid contribution 0.702 0.300 -0.149 0.778 sum -4.402 -10.405 2.259 11.522 Atomic orbital electron populations 1.22660 0.82716 1.01971 0.99182 1.88142 1.18018 1.27192 1.95151 1.23066 0.95435 0.85091 0.99786 1.21319 0.91053 0.99412 0.87815 1.47718 1.64321 1.05269 1.13882 1.20121 0.96200 0.90574 0.83326 1.21323 0.93818 1.28277 1.15007 0.91891 1.24896 0.98269 0.94997 0.94892 1.69875 1.35545 1.30349 1.15526 0.86555 0.85083 0.78625 0.77347 1.19785 1.21050 1.20349 1.16841 0.77573 0.82486 0.85010 1.90664 1.52208 1.61873 1.40212 1.19884 1.15282 0.82198 1.00448 1.23983 0.92236 1.04309 0.89295 1.20441 1.14761 0.93364 1.00381 1.21470 0.75074 0.89575 0.84730 1.22181 1.03402 0.98928 1.00554 1.90612 1.44193 1.25255 1.73121 1.22365 1.00099 0.99033 0.87092 1.43563 1.42610 1.06479 1.15029 1.22220 0.99550 0.88589 0.96932 0.94816 0.94657 0.90348 0.93277 0.93133 0.90232 0.88610 0.92831 0.94514 0.92141 0.75786 0.89365 0.90246 0.90518 0.81262 0.90948 0.90507 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.60 9.26 -48.53 -0.45 -7.05 16 3 C 0.04 0.73 6.28 37.16 0.23 0.96 16 4 C 0.13 2.37 5.84 -4.04 -0.02 2.34 16 5 N -0.58 -12.72 2.44 -176.54 -0.43 -13.15 16 6 C 0.22 5.26 4.65 -5.19 -0.02 5.23 16 7 C -0.55 -14.27 6.95 -34.44 -0.24 -14.51 16 8 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 9 C 0.08 2.03 5.13 -17.82 -0.09 1.93 16 10 N -0.88 -24.55 13.29 55.43 0.74 -23.81 16 11 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.59 13.20 7.31 -12.78 -0.09 13.11 16 16 O -0.57 -12.84 13.26 -8.09 -0.11 -12.95 16 17 C -0.07 -1.48 6.66 -82.40 -0.55 -2.03 16 18 C -0.08 -1.74 7.98 -39.03 -0.31 -2.05 16 19 C -0.28 -5.45 6.12 -105.11 -0.64 -6.09 16 20 C 0.41 7.74 7.24 -30.93 -0.22 7.51 16 21 C -0.19 -2.38 10.02 36.00 0.36 -2.02 16 22 O -0.46 -10.79 17.67 5.52 0.10 -10.69 16 23 C 0.06 0.86 10.71 -16.42 -0.18 0.68 16 24 N -0.40 -6.97 3.12 -120.05 -0.37 -7.34 16 25 C 0.07 0.92 10.46 59.85 0.63 1.54 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.49 7.50 -51.93 -0.39 1.10 16 32 H 0.10 1.66 8.07 -51.93 -0.42 1.24 16 33 H 0.05 1.39 4.88 -51.93 -0.25 1.14 16 34 H 0.04 0.92 8.06 -51.93 -0.42 0.50 16 35 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.23 5.90 2.84 -52.49 -0.15 5.75 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.73 7.19 -51.93 -0.37 0.36 16 40 H 0.17 1.72 7.49 -52.49 -0.39 1.33 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.10 1.59 6.44 -51.93 -0.33 1.26 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -33.53 358.08 -6.27 -39.80 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.08 Total: 5.02 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -0.04 Total: 8.15 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.07 Total: -44.31 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.46 Total: -30.69 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.53 -6.27 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.630 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds