Wall clock time and date at job start Tue Mar 31 2020 09:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46921 * 2 1 4 4 C 1.50699 * 109.47376 * 239.99372 * 2 1 3 5 5 H 1.07997 * 120.00297 * 275.00380 * 4 2 1 6 6 C 1.37884 * 119.99638 * 95.00385 * 4 2 1 7 7 N 1.31511 * 119.99774 * 184.91711 * 6 4 2 8 8 Si 1.86794 * 120.00257 * 4.91621 * 6 4 2 9 9 H 1.48502 * 109.47074 * 84.83463 * 8 6 4 10 10 H 1.48498 * 109.47395 * 204.83303 * 8 6 4 11 11 H 1.48503 * 109.47446 * 324.83808 * 8 6 4 12 12 N 1.46503 * 109.47127 * 119.99378 * 2 1 3 13 13 C 1.46500 * 119.99560 * 60.00047 * 12 2 1 14 14 C 1.34777 * 120.00229 * 240.00302 * 12 2 1 15 15 O 1.21277 * 119.99772 * 359.97438 * 14 12 2 16 16 C 1.50693 * 119.99885 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47003 * 179.97438 * 16 14 12 18 18 C 1.53004 * 109.47350 * 179.97438 * 17 16 14 19 19 N 1.46497 * 109.47357 * 179.97438 * 18 17 16 20 20 C 1.34772 * 120.00223 * 179.97438 * 19 18 17 21 21 O 1.21699 * 119.99729 * 0.02562 * 20 19 18 22 22 C 1.46659 * 120.00372 * 179.97438 * 20 19 18 23 23 C 1.36544 * 125.98904 * 179.71936 * 22 20 19 24 24 C 1.40359 * 106.70711 * 179.91380 * 23 22 20 25 25 C 1.35133 * 107.11811 * 0.34911 * 24 23 22 26 26 O 1.33935 * 108.76393 * 359.78361 * 25 24 23 27 27 H 1.09000 * 109.47420 * 294.98090 * 1 2 3 28 28 H 1.09001 * 109.47152 * 54.98545 * 1 2 3 29 29 H 1.09002 * 109.47098 * 174.97859 * 1 2 3 30 30 H 0.97002 * 119.99959 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47180 * 269.99955 * 13 12 2 32 32 H 1.08994 * 109.47430 * 30.00519 * 13 12 2 33 33 H 1.09002 * 109.46726 * 150.00239 * 13 12 2 34 34 H 1.09000 * 109.47120 * 299.99759 * 16 14 12 35 35 H 1.08995 * 109.47301 * 59.99921 * 16 14 12 36 36 H 1.09005 * 109.47428 * 300.00016 * 17 16 14 37 37 H 1.09000 * 109.47580 * 59.99669 * 17 16 14 38 38 H 1.09000 * 109.46975 * 299.99894 * 18 17 16 39 39 H 1.08995 * 109.47100 * 59.99845 * 18 17 16 40 40 H 0.97001 * 120.00216 * 0.02562 * 19 18 17 41 41 H 1.07997 * 126.64415 * 0.03983 * 23 22 20 42 42 H 1.08006 * 126.44277 * 180.15875 * 24 23 22 43 43 H 1.07997 * 125.61868 * 179.78281 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2289 6 6 2.3604 0.0120 -2.3580 7 7 2.7061 -0.6133 -3.4621 8 14 2.3137 1.8789 -2.3175 9 1 3.5993 2.3947 -1.7823 10 1 2.1060 2.3989 -3.6929 11 1 1.1988 2.3275 -1.4451 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2959 -0.7459 3.3136 17 6 4.1462 0.2157 4.1461 18 6 4.6562 -0.5055 5.3955 19 7 5.4709 0.4151 6.1923 20 6 6.0284 -0.0041 7.3455 21 8 5.8553 -1.1475 7.7247 22 6 6.8445 0.9173 8.1430 23 6 7.4593 0.6253 9.3268 24 6 8.1276 1.7910 9.7326 25 6 7.8880 2.7338 8.7946 26 8 7.1145 2.2035 7.8384 27 1 -0.3634 0.4340 0.9315 28 1 -0.3633 0.5897 -0.8417 29 1 -0.3633 -1.0237 -0.0900 30 1 2.9365 -0.1051 -4.2555 31 1 0.7375 -2.1442 1.9995 32 1 1.5295 -2.5968 0.4711 33 1 2.4628 -2.5817 1.9866 34 1 2.4483 -1.0888 3.9070 35 1 3.9016 -1.6020 3.0167 36 1 4.9939 0.5582 3.5525 37 1 3.5409 1.0721 4.4430 38 1 3.8084 -0.8476 5.9890 39 1 5.2614 -1.3621 5.0990 40 1 5.6086 1.3266 5.8903 41 1 7.4374 -0.3200 9.8485 42 1 8.7193 1.9126 10.6279 43 1 8.2591 3.7479 8.8130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:21 Heat of formation + Delta-G solvation = -62.800127 kcal Electronic energy + Delta-G solvation = -24462.548400 eV Core-core repulsion = 20702.561118 eV Total energy + Delta-G solvation = -3759.987281 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.03983 -39.76142 -39.21806 -36.05116 -35.33671 -33.52461 -33.00743 -32.46363 -30.62367 -30.07200 -27.03231 -26.14638 -25.26569 -23.66720 -22.28697 -21.97287 -20.89443 -20.35723 -18.79384 -18.25722 -17.28636 -16.75430 -16.65147 -16.37331 -16.04817 -15.85637 -15.31478 -14.96974 -14.43330 -14.13256 -13.81033 -13.47870 -13.38456 -13.08248 -12.93096 -12.74821 -12.54380 -12.46823 -12.16548 -12.00330 -11.76364 -11.48066 -11.28476 -11.07250 -10.90051 -10.73491 -10.59462 -10.45992 -10.44707 -9.80328 -9.46980 -9.31762 -9.03400 -9.03386 -8.62674 -7.68961 -6.19002 -4.21251 0.70226 1.97075 2.31167 2.87887 2.90772 3.28110 3.30774 3.36964 3.43776 3.84236 4.30732 4.36628 4.50708 4.61541 4.75066 4.94061 5.03435 5.18327 5.23209 5.35324 5.38393 5.44241 5.47885 5.55740 5.60622 5.79624 5.91433 5.94953 6.02069 6.08470 6.22365 6.26311 6.34558 6.38634 6.43812 6.57290 6.91347 7.06217 7.15941 7.45834 7.62406 7.77192 8.12539 8.48595 8.82000 8.92505 9.43605 10.92837 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023802 B = 0.002358 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.074777 B =11872.661312 C =12532.996349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.221 3.779 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.876 3.124 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.589 5.589 13 C 0.082 3.918 14 C 0.503 3.497 15 O -0.560 6.560 16 C -0.135 4.135 17 C -0.116 4.116 18 C 0.117 3.883 19 N -0.716 5.716 20 C 0.601 3.399 21 O -0.522 6.522 22 C -0.079 4.079 23 C -0.121 4.121 24 C -0.227 4.227 25 C -0.006 4.006 26 O -0.163 6.163 27 H 0.025 0.975 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.266 0.734 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.408 0.592 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 3.162 23.944 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.121 3.879 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.703 3.297 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.320 5.320 13 C -0.062 4.062 14 C 0.291 3.709 15 O -0.440 6.440 16 C -0.176 4.176 17 C -0.155 4.155 18 C -0.006 4.006 19 N -0.367 5.367 20 C 0.387 3.613 21 O -0.400 6.400 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.246 4.246 25 C -0.076 4.076 26 O -0.059 6.059 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.243 0.757 41 H 0.178 0.822 42 H 0.175 0.825 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.797 3.078 23.578 24.730 hybrid contribution 0.236 1.250 -0.096 1.276 sum 7.033 4.328 23.482 24.892 Atomic orbital electron populations 1.22208 0.98353 1.00865 0.99050 1.19308 0.90777 0.94951 0.82893 0.91822 1.21120 1.44720 0.95663 0.94856 0.90384 1.24969 0.93771 0.98550 0.95226 1.69888 1.45178 1.36090 1.01690 0.86875 0.79866 0.86050 0.76918 1.19655 1.21408 1.18865 1.48331 1.49052 1.11726 1.22924 1.21646 0.98957 0.83071 1.02552 1.20416 0.79083 0.87091 0.84358 1.90632 1.58692 1.17442 1.77208 1.21557 1.00858 0.99602 0.95592 1.21524 1.00789 0.98646 0.94504 1.21528 0.94738 0.92490 0.91796 1.45934 1.51607 1.16636 1.22522 1.16541 0.78709 0.85594 0.80425 1.90893 1.61082 1.17422 1.70602 1.22129 1.07718 0.83687 0.99562 1.21998 0.97128 1.00422 0.94636 1.21887 1.06412 0.93406 1.02861 1.24456 0.95157 0.99992 0.87964 1.84081 1.54321 1.23511 1.43940 0.95561 0.92674 0.93170 0.92375 0.93819 0.90015 0.92346 0.89136 0.88831 0.90260 0.90447 0.90886 0.90802 0.75698 0.82178 0.82533 0.77259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.10 37.16 0.34 -2.71 16 2 C 0.22 5.26 2.30 -69.08 -0.16 5.10 16 3 H 0.06 1.67 4.05 -51.93 -0.21 1.46 16 4 C -0.53 -14.27 8.72 -34.44 -0.30 -14.57 16 5 H 0.08 2.23 6.82 -52.49 -0.36 1.88 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 7 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 8 Si 0.88 22.10 26.99 -169.99 -4.59 17.51 16 9 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.44 6.82 56.52 0.39 -6.05 16 12 N -0.59 -11.85 2.75 -175.27 -0.48 -12.34 16 13 C 0.08 1.28 9.39 59.85 0.56 1.84 16 14 C 0.50 9.65 7.67 -10.99 -0.08 9.56 16 15 O -0.56 -12.88 15.31 5.56 0.09 -12.80 16 16 C -0.14 -1.76 4.25 -27.89 -0.12 -1.88 16 17 C -0.12 -1.37 4.62 -26.73 -0.12 -1.50 16 18 C 0.12 1.22 5.67 -4.04 -0.02 1.20 16 19 N -0.72 -7.45 5.55 -61.63 -0.34 -7.79 16 20 C 0.60 7.22 7.79 -12.86 -0.10 7.12 16 21 O -0.52 -7.73 16.86 5.19 0.09 -7.65 16 22 C -0.08 -0.82 7.13 -36.80 -0.26 -1.09 16 23 C -0.12 -1.11 10.62 -39.40 -0.42 -1.53 16 24 C -0.23 -1.53 10.87 -39.89 -0.43 -1.96 16 25 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 26 O -0.16 -1.47 10.40 4.99 0.05 -1.42 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.97 7.84 -51.93 -0.41 0.57 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.42 6.56 -51.93 -0.34 1.08 16 33 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 34 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16 36 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.41 3.64 8.23 -40.82 -0.34 3.31 16 41 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.21 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -35.14 363.38 -5.97 -41.10 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.17 Total: 1.70 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.86 Total: 2.05 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.05 Total: -45.98 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.22 Total: -21.86 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.59 Total: 17.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.14 -5.97 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.697 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds