Wall clock time and date at job start Tue Mar 31 2020 09:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46921 * 2 1 4 4 C 1.50699 * 109.47376 * 239.99372 * 2 1 3 5 5 H 1.07997 * 120.00297 * 275.00380 * 4 2 1 6 6 C 1.37884 * 119.99638 * 95.00385 * 4 2 1 7 7 N 1.31511 * 119.99774 * 184.91711 * 6 4 2 8 8 Si 1.86794 * 120.00257 * 4.91621 * 6 4 2 9 9 H 1.48502 * 109.47074 * 84.83463 * 8 6 4 10 10 H 1.48498 * 109.47395 * 204.83303 * 8 6 4 11 11 H 1.48503 * 109.47446 * 324.83808 * 8 6 4 12 12 N 1.46503 * 109.47127 * 119.99378 * 2 1 3 13 13 C 1.46500 * 119.99560 * 60.00047 * 12 2 1 14 14 C 1.34777 * 120.00229 * 240.00302 * 12 2 1 15 15 O 1.21277 * 119.99772 * 359.97438 * 14 12 2 16 16 C 1.50693 * 119.99885 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47003 * 179.97438 * 16 14 12 18 18 C 1.53004 * 109.47350 * 179.97438 * 17 16 14 19 19 N 1.46497 * 109.47357 * 179.97438 * 18 17 16 20 20 C 1.34772 * 120.00223 * 179.97438 * 19 18 17 21 21 O 1.21699 * 119.99729 * 0.02562 * 20 19 18 22 22 C 1.46659 * 120.00372 * 179.97438 * 20 19 18 23 23 C 1.36544 * 125.98904 * 179.71936 * 22 20 19 24 24 C 1.40359 * 106.70711 * 179.91380 * 23 22 20 25 25 C 1.35133 * 107.11811 * 0.34911 * 24 23 22 26 26 O 1.33935 * 108.76393 * 359.78361 * 25 24 23 27 27 H 1.09000 * 109.47420 * 294.98090 * 1 2 3 28 28 H 1.09001 * 109.47152 * 54.98545 * 1 2 3 29 29 H 1.09002 * 109.47098 * 174.97859 * 1 2 3 30 30 H 0.97002 * 119.99959 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47180 * 269.99955 * 13 12 2 32 32 H 1.08994 * 109.47430 * 30.00519 * 13 12 2 33 33 H 1.09002 * 109.46726 * 150.00239 * 13 12 2 34 34 H 1.09000 * 109.47120 * 299.99759 * 16 14 12 35 35 H 1.08995 * 109.47301 * 59.99921 * 16 14 12 36 36 H 1.09005 * 109.47428 * 300.00016 * 17 16 14 37 37 H 1.09000 * 109.47580 * 59.99669 * 17 16 14 38 38 H 1.09000 * 109.46975 * 299.99894 * 18 17 16 39 39 H 1.08995 * 109.47100 * 59.99845 * 18 17 16 40 40 H 0.97001 * 120.00216 * 0.02562 * 19 18 17 41 41 H 1.07997 * 126.64415 * 0.03983 * 23 22 20 42 42 H 1.08006 * 126.44277 * 180.15875 * 24 23 22 43 43 H 1.07997 * 125.61868 * 179.78281 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2289 6 6 2.3604 0.0120 -2.3580 7 7 2.7061 -0.6133 -3.4621 8 14 2.3137 1.8789 -2.3175 9 1 3.5993 2.3947 -1.7823 10 1 2.1060 2.3989 -3.6929 11 1 1.1988 2.3275 -1.4451 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2959 -0.7459 3.3136 17 6 4.1462 0.2157 4.1461 18 6 4.6562 -0.5055 5.3955 19 7 5.4709 0.4151 6.1923 20 6 6.0284 -0.0041 7.3455 21 8 5.8553 -1.1475 7.7247 22 6 6.8445 0.9173 8.1430 23 6 7.4593 0.6253 9.3268 24 6 8.1276 1.7910 9.7326 25 6 7.8880 2.7338 8.7946 26 8 7.1145 2.2035 7.8384 27 1 -0.3634 0.4340 0.9315 28 1 -0.3633 0.5897 -0.8417 29 1 -0.3633 -1.0237 -0.0900 30 1 2.9365 -0.1051 -4.2555 31 1 0.7375 -2.1442 1.9995 32 1 1.5295 -2.5968 0.4711 33 1 2.4628 -2.5817 1.9866 34 1 2.4483 -1.0888 3.9070 35 1 3.9016 -1.6020 3.0167 36 1 4.9939 0.5582 3.5525 37 1 3.5409 1.0721 4.4430 38 1 3.8084 -0.8476 5.9890 39 1 5.2614 -1.3621 5.0990 40 1 5.6086 1.3266 5.8903 41 1 7.4374 -0.3200 9.8485 42 1 8.7193 1.9126 10.6279 43 1 8.2591 3.7479 8.8130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:21 Heat of formation + Delta-G solvation = -88.120636 kcal Electronic energy + Delta-G solvation = -24463.646379 eV Core-core repulsion = 20702.561118 eV Total energy + Delta-G solvation = -3761.085261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.64764 -40.88489 -40.50067 -37.35594 -36.66481 -34.75980 -34.16161 -33.76615 -32.14997 -30.92996 -28.05817 -27.52604 -27.24177 -24.57268 -23.21442 -22.67150 -22.19959 -21.29089 -19.79832 -19.50914 -19.22783 -17.79740 -17.47105 -17.41317 -17.20531 -16.97452 -16.69942 -16.14876 -15.87948 -15.22279 -15.05552 -14.72284 -14.32432 -14.23000 -14.10941 -13.94645 -13.93578 -13.60466 -13.47130 -13.23394 -13.04687 -12.93237 -12.89361 -12.66095 -12.43395 -12.27547 -11.86722 -11.81032 -11.53212 -11.27634 -11.06096 -10.79696 -10.60538 -10.32696 -9.65577 -9.30481 -8.37659 -6.41128 0.00719 1.26428 1.32485 1.40638 1.41728 1.64869 1.82864 2.06528 2.13254 2.26786 2.42989 3.04546 3.61841 3.71889 3.95010 4.00918 4.02388 4.09746 4.24821 4.44800 4.51979 4.56649 4.60501 4.67031 4.70330 4.74738 4.75462 4.86978 4.89754 4.95097 5.04677 5.13104 5.15168 5.17076 5.30022 5.35659 5.39456 5.54374 5.82406 5.84886 6.16435 6.36160 6.64782 6.81556 6.92960 7.24291 7.43152 8.77621 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023802 B = 0.002358 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.074777 B =11872.661312 C =12532.996349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.219 3.781 3 H 0.039 0.961 4 C -0.518 4.518 5 H 0.054 0.946 6 C 0.026 3.974 7 N -0.935 5.935 8 Si 0.927 3.073 9 H -0.284 1.284 10 H -0.278 1.278 11 H -0.252 1.252 12 N -0.601 5.601 13 C 0.078 3.922 14 C 0.493 3.507 15 O -0.606 6.606 16 C -0.124 4.124 17 C -0.106 4.106 18 C 0.125 3.875 19 N -0.711 5.711 20 C 0.600 3.400 21 O -0.560 6.560 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.234 4.234 25 C 0.009 3.991 26 O -0.173 6.173 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.268 0.732 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.414 0.586 41 H 0.160 0.840 42 H 0.184 0.816 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.878 3.867 26.500 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.117 3.883 3 H 0.057 0.943 4 C -0.557 4.557 5 H 0.073 0.927 6 C -0.173 4.173 7 N -0.574 5.574 8 Si 0.753 3.247 9 H -0.210 1.210 10 H -0.203 1.203 11 H -0.176 1.176 12 N -0.331 5.331 13 C -0.064 4.064 14 C 0.283 3.717 15 O -0.489 6.489 16 C -0.164 4.164 17 C -0.144 4.144 18 C 0.002 3.998 19 N -0.362 5.362 20 C 0.387 3.613 21 O -0.441 6.441 22 C -0.164 4.164 23 C -0.146 4.146 24 C -0.253 4.253 25 C -0.061 4.061 26 O -0.069 6.069 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.251 0.749 41 H 0.178 0.822 42 H 0.201 0.799 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.776 3.773 26.144 27.270 hybrid contribution 0.298 1.026 -0.790 1.329 sum 7.074 4.799 25.354 26.756 Atomic orbital electron populations 1.22060 0.95968 1.01754 0.99887 1.19085 0.92544 0.93524 0.83183 0.94310 1.21386 1.43368 0.94789 0.96157 0.92744 1.25645 0.94230 1.02210 0.95204 1.69990 1.47487 1.37505 1.02447 0.86054 0.79461 0.81842 0.77365 1.21036 1.20350 1.17578 1.48311 1.49375 1.13444 1.21971 1.21878 1.01775 0.80469 1.02313 1.21454 0.77899 0.86811 0.85567 1.90607 1.60066 1.19728 1.78482 1.21573 1.02319 0.99492 0.93001 1.21386 0.99969 0.98425 0.94638 1.21430 0.95011 0.92198 0.91143 1.45903 1.51164 1.16962 1.22137 1.16738 0.78539 0.85437 0.80542 1.90856 1.62691 1.18932 1.71591 1.21889 1.09624 0.84518 1.00404 1.22278 0.96716 1.01370 0.94216 1.22237 1.06581 0.92423 1.04065 1.25391 0.92885 1.01326 0.86470 1.84073 1.55006 1.22896 1.44928 0.93356 0.93476 0.91970 0.92303 0.90717 0.92288 0.88996 0.85732 0.86831 0.91824 0.90950 0.90059 0.90677 0.74939 0.82194 0.79886 0.73110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 9.10 71.98 0.65 -4.89 16 2 C 0.22 10.31 2.30 44.24 0.10 10.41 16 3 H 0.04 2.03 4.05 -2.39 -0.01 2.02 16 4 C -0.52 -28.53 8.72 25.60 0.22 -28.31 16 5 H 0.05 3.19 6.82 -2.91 -0.02 3.17 16 6 C 0.03 1.53 5.47 84.66 0.46 1.99 16 7 N -0.93 -57.15 13.96 21.45 0.30 -56.86 16 8 Si 0.93 46.30 26.99 68.60 1.85 48.15 16 9 H -0.28 -14.65 7.11 99.48 0.71 -13.95 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.25 -11.93 6.82 99.48 0.68 -11.25 16 12 N -0.60 -23.25 2.75 -826.81 -2.28 -25.53 16 13 C 0.08 2.23 9.39 127.77 1.20 3.43 16 14 C 0.49 18.17 7.67 87.65 0.67 18.84 16 15 O -0.61 -27.79 15.31 -3.02 -0.05 -27.83 16 16 C -0.12 -2.86 4.25 29.84 0.13 -2.74 16 17 C -0.11 -2.33 4.62 30.59 0.14 -2.19 16 18 C 0.13 2.39 5.67 86.38 0.49 2.88 16 19 N -0.71 -14.28 5.55 -467.11 -2.59 -16.87 16 20 C 0.60 14.29 7.79 86.44 0.67 14.96 16 21 O -0.56 -16.64 16.86 -4.35 -0.07 -16.71 16 22 C -0.11 -2.30 7.13 24.07 0.17 -2.13 16 23 C -0.13 -2.18 10.62 22.39 0.24 -1.94 16 24 C -0.23 -2.60 10.87 22.07 0.24 -2.36 16 25 C 0.01 0.08 12.08 67.10 0.81 0.89 16 26 O -0.17 -2.87 10.40 -5.07 -0.05 -2.92 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 2.31 7.84 -2.39 -0.02 2.29 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.98 6.56 -2.39 -0.02 1.96 16 33 H 0.09 2.00 6.44 -2.39 -0.02 1.99 16 34 H 0.12 2.10 8.11 -2.39 -0.02 2.08 16 35 H 0.11 2.24 7.40 -2.39 -0.02 2.22 16 36 H 0.06 1.61 8.10 -2.38 -0.02 1.59 16 37 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.41 7.15 8.23 -92.71 -0.76 6.38 16 41 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 42 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.25 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: -1.00 -79.34 363.38 3.55 -75.79 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.24 Total: 13.90 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.21 Total: 8.89 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -4.57 Total: -99.25 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.17 Total: -47.47 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.85 Total: 48.15 kcal Total: -79.34 3.55 -75.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.331 kcal (2) G-P(sol) polarization free energy of solvation -79.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds