Wall clock time and date at job start Tue Mar 31 2020 10:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46509 * 109.46718 * 2 1 4 4 C 1.36942 * 119.99735 * 264.03551 * 3 2 1 5 5 H 1.07996 * 119.99285 * 188.07480 * 4 3 2 6 6 C 1.38803 * 120.00031 * 8.07655 * 4 3 2 7 7 N 1.31625 * 120.00415 * 25.12410 * 6 4 3 8 8 Si 1.86806 * 120.00150 * 205.11879 * 6 4 3 9 9 H 1.48501 * 109.46849 * 84.99089 * 8 6 4 10 10 H 1.48499 * 109.47380 * 204.99274 * 8 6 4 11 11 H 1.48502 * 109.46909 * 324.99566 * 8 6 4 12 12 C 1.46501 * 120.00134 * 84.03966 * 3 2 1 13 13 C 1.50698 * 109.46898 * 270.00002 * 12 3 2 14 14 O 1.21420 * 120.00058 * 359.97438 * 13 12 3 15 15 C 1.41553 * 120.00018 * 180.02562 * 13 12 3 16 16 N 1.37998 * 125.97686 * 0.28827 * 15 13 12 17 17 H 0.96999 * 125.37113 * 0.02562 * 16 15 13 18 18 C 1.34103 * 109.26597 * 180.17876 * 16 15 13 19 19 C 1.50704 * 125.65757 * 179.83792 * 18 16 15 20 20 C 1.38415 * 108.68583 * 359.57440 * 18 16 15 21 21 C 1.47280 * 126.40870 * 180.26117 * 20 18 16 22 22 O 1.21530 * 119.99823 * 90.02954 * 21 20 18 23 23 O 1.34758 * 120.00097 * 270.02530 * 21 20 18 24 24 C 1.45197 * 116.99853 * 180.02562 * 23 21 20 25 25 C 1.37825 * 125.97912 * 180.02562 * 15 13 12 26 26 C 1.50703 * 126.58626 * 0.02562 * 25 15 13 27 27 H 1.09004 * 109.47433 * 300.00017 * 1 2 3 28 28 H 1.09003 * 109.47552 * 60.00309 * 1 2 3 29 29 H 1.09003 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47548 * 240.00116 * 2 1 3 31 31 H 1.09003 * 109.47552 * 119.99691 * 2 1 3 32 32 H 0.96993 * 120.00231 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47062 * 149.99690 * 12 3 2 34 34 H 1.09000 * 109.47146 * 29.99551 * 12 3 2 35 35 H 1.08997 * 109.47312 * 269.69234 * 19 18 16 36 36 H 1.09004 * 109.47288 * 149.69308 * 19 18 16 37 37 H 1.09003 * 109.46893 * 29.69785 * 19 18 16 38 38 H 1.08997 * 109.47241 * 180.02562 * 24 23 21 39 39 H 1.09003 * 109.46964 * 299.99738 * 24 23 21 40 40 H 1.08995 * 109.47419 * 60.00269 * 24 23 21 41 41 H 1.09002 * 109.47446 * 270.00162 * 26 25 15 42 42 H 1.09000 * 109.47402 * 30.00610 * 26 25 15 43 43 H 1.09009 * 109.46497 * 150.00599 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3626 1.9858 -1.1796 5 1 2.8434 2.9527 -1.1704 6 6 2.0935 1.3557 -2.3867 7 7 1.1177 0.4759 -2.4669 8 14 3.1162 1.7563 -3.8978 9 1 4.3449 0.9223 -3.8992 10 1 2.3239 1.4725 -5.1213 11 1 3.4928 3.1926 -3.8740 12 6 2.1381 2.1159 1.2619 13 6 0.8469 2.8387 1.5469 14 8 -0.0830 2.7493 0.7713 15 6 0.7184 3.6227 2.7185 16 7 1.6930 3.8148 3.6764 17 1 2.5840 3.4318 3.6555 18 6 1.2132 4.6117 4.6423 19 6 1.9669 5.0572 5.8689 20 6 -0.0873 4.9620 4.3229 21 6 -0.9779 5.8297 5.1123 22 8 -0.9905 7.0286 4.9139 23 8 -1.7788 5.2942 6.0545 24 6 -2.6303 6.2091 6.7934 25 6 -0.4003 4.3318 3.0996 26 6 -1.7069 4.4173 2.3535 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9295 0.0359 -3.3105 33 1 2.9501 2.8389 1.1856 34 1 2.3492 1.4165 2.0708 35 1 1.8019 4.3435 6.6760 36 1 1.6124 6.0412 6.1759 37 1 3.0318 5.1093 5.6419 38 1 -3.2215 5.6498 7.5186 39 1 -2.0121 6.9396 7.3152 40 1 -3.2963 6.7246 6.1015 41 1 -1.6759 5.2590 1.6616 42 1 -1.8682 3.4945 1.7961 43 1 -2.5218 4.5602 3.0633 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103470908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:33 Heat of formation + Delta-G solvation = -67.321934 kcal Electronic energy + Delta-G solvation = -25967.964362 eV Core-core repulsion = 22207.781000 eV Total energy + Delta-G solvation = -3760.183362 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.79248 -41.10105 -39.79914 -37.42819 -37.33953 -34.17601 -33.40317 -32.91761 -31.43265 -29.54646 -29.20970 -28.33480 -27.13030 -25.35270 -24.23351 -22.68459 -21.76170 -20.84481 -20.18980 -18.68267 -18.52807 -18.30495 -17.34943 -17.14954 -16.87053 -16.45858 -15.78300 -15.74459 -15.56167 -15.05211 -14.59115 -14.51467 -14.40650 -14.14177 -14.09564 -13.74423 -13.71270 -13.58429 -13.23819 -13.21144 -13.07617 -12.98889 -12.73397 -12.63855 -12.58967 -12.35096 -11.87408 -11.81250 -11.79658 -11.60305 -11.30607 -10.67427 -10.21498 -9.99680 -9.17147 -8.81480 -7.77186 -5.10193 0.17372 0.98756 1.02218 1.49690 1.51102 1.58407 1.77520 2.16214 2.21374 2.55307 3.23975 3.48730 3.65790 3.72420 3.86312 3.93311 4.18983 4.33166 4.34977 4.41841 4.55993 4.57832 4.61907 4.66499 4.70462 4.71416 4.72767 4.78798 4.93944 5.06102 5.09142 5.10723 5.20276 5.30297 5.33629 5.46136 5.60287 5.71497 5.84107 6.22795 6.35759 6.40372 6.66331 6.97965 7.22787 7.92181 8.30810 9.24631 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.003361 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.982816 B = 8327.915042 C = 8522.147922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.169 3.831 3 N -0.592 5.592 4 C -0.257 4.257 5 H 0.073 0.927 6 C -0.052 4.052 7 N -0.914 5.914 8 Si 0.958 3.042 9 H -0.283 1.283 10 H -0.303 1.303 11 H -0.277 1.277 12 C 0.099 3.901 13 C 0.372 3.628 14 O -0.463 6.463 15 C -0.092 4.092 16 N -0.491 5.491 17 H 0.443 0.557 18 C 0.138 3.862 19 C -0.097 4.097 20 C -0.253 4.253 21 C 0.558 3.442 22 O -0.529 6.529 23 O -0.356 6.356 24 C 0.024 3.976 25 C -0.049 4.049 26 C -0.091 4.091 27 H 0.016 0.984 28 H 0.050 0.950 29 H 0.024 0.976 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.244 0.756 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 7.425 22.806 24.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.044 3.956 3 N -0.312 5.312 4 C -0.387 4.387 5 H 0.090 0.910 6 C -0.247 4.247 7 N -0.561 5.561 8 Si 0.788 3.212 9 H -0.210 1.210 10 H -0.230 1.230 11 H -0.202 1.202 12 C -0.029 4.029 13 C 0.249 3.751 14 O -0.339 6.339 15 C -0.201 4.201 16 N -0.088 5.088 17 H 0.285 0.715 18 C 0.012 3.988 19 C -0.154 4.154 20 C -0.260 4.260 21 C 0.402 3.598 22 O -0.419 6.419 23 O -0.272 6.272 24 C -0.068 4.068 25 C -0.056 4.056 26 C -0.148 4.148 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.558 7.517 22.118 23.367 hybrid contribution 0.062 0.272 -1.298 1.328 sum 0.621 7.789 20.820 22.238 Atomic orbital electron populations 1.22064 0.99151 0.97417 0.99865 1.20782 0.92451 0.84275 0.98102 1.44285 1.74785 1.10323 1.01826 1.19469 1.31074 1.03343 0.84784 0.90962 1.25409 0.98723 1.00774 0.99758 1.70389 1.28229 1.32680 1.24753 0.85412 0.78717 0.77717 0.79363 1.20999 1.22992 1.20237 1.21564 0.94507 0.96585 0.90230 1.22301 0.92030 0.78659 0.82125 1.90583 1.41371 1.55876 1.46060 1.19939 0.91401 1.11480 0.97322 1.41487 1.14466 1.36739 1.16083 0.71459 1.21130 0.92182 0.92798 0.92678 1.20773 1.00715 1.02856 0.91032 1.18403 0.95840 1.12549 0.99217 1.20315 0.77194 0.85589 0.76695 1.90824 1.66786 1.17459 1.66801 1.86687 1.50802 1.42471 1.47233 1.23633 0.93234 0.94214 0.95766 1.20211 0.95791 0.95581 0.94055 1.20348 0.92431 1.02906 0.99144 0.96452 0.93061 0.95655 0.92041 0.95040 0.94667 0.88711 0.87913 0.87239 0.89968 0.87453 0.84870 0.91078 0.92248 0.91625 0.91235 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.71 71.98 0.63 -5.63 16 2 C 0.17 8.18 5.64 86.38 0.49 8.66 16 3 N -0.59 -28.63 2.12 -706.36 -1.49 -30.12 16 4 C -0.26 -13.94 9.70 84.03 0.82 -13.12 16 5 H 0.07 3.83 7.93 -2.91 -0.02 3.81 16 6 C -0.05 -2.88 4.90 84.86 0.42 -2.46 16 7 N -0.91 -53.63 8.60 21.65 0.19 -53.44 16 8 Si 0.96 45.39 29.62 68.60 2.03 47.43 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.10 3.59 5.62 85.63 0.48 4.07 16 13 C 0.37 14.46 6.66 26.50 0.18 14.64 16 14 O -0.46 -22.59 12.29 -3.46 -0.04 -22.63 16 15 C -0.09 -2.88 6.76 38.89 0.26 -2.62 16 16 N -0.49 -10.20 5.87 -174.81 -1.03 -11.22 16 17 H 0.44 5.78 8.62 -92.71 -0.80 4.98 16 18 C 0.14 2.79 7.19 42.26 0.30 3.09 16 19 C -0.10 -1.00 10.23 71.24 0.73 -0.27 16 20 C -0.25 -7.01 6.00 -20.15 -0.12 -7.13 16 21 C 0.56 15.26 7.11 70.20 0.50 15.76 16 22 O -0.53 -16.83 16.90 19.74 0.33 -16.50 16 23 O -0.36 -8.11 10.58 -56.69 -0.60 -8.71 16 24 C 0.02 0.36 10.57 113.37 1.20 1.56 16 25 C -0.05 -1.62 6.25 -19.25 -0.12 -1.74 16 26 C -0.09 -3.07 9.61 71.24 0.68 -2.38 16 27 H 0.02 0.81 6.42 -2.39 -0.02 0.79 16 28 H 0.05 3.00 6.35 -2.39 -0.02 2.98 16 29 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 3.35 5.83 -2.39 -0.01 3.33 16 31 H 0.03 1.31 7.98 -2.39 -0.02 1.29 16 32 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.10 3.02 8.03 -2.39 -0.02 3.00 16 34 H 0.10 2.96 7.95 -2.39 -0.02 2.94 16 35 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.96 7.92 -2.39 -0.02 0.94 16 37 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.07 2.64 6.41 -2.39 -0.02 2.62 16 43 H 0.07 2.10 8.05 -2.38 -0.02 2.08 16 Total: -1.00 -77.67 359.04 6.06 -71.60 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.24 Total: 11.18 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.44 Total: 12.42 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -2.33 Total: -94.79 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.31 Total: -47.84 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.43 kcal Total: -77.67 6.06 -71.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103470908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.279 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds