Wall clock time and date at job start Tue Mar 31 2020 09:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47095 * 2 1 4 4 C 1.36464 * 124.84913 * 90.02401 * 3 2 1 5 5 C 1.50701 * 125.56038 * 359.94587 * 4 3 2 6 6 C 1.34478 * 108.87598 * 179.97438 * 4 3 2 7 7 C 1.46705 * 106.33914 * 0.02562 * 6 4 3 8 8 C 1.47181 * 126.94503 * 180.02562 * 7 6 4 9 9 O 1.21647 * 120.00156 * 156.09895 * 8 7 6 10 10 N 1.34778 * 119.99949 * 336.09578 * 8 7 6 11 11 C 1.36973 * 120.00180 * 186.37002 * 10 8 7 12 12 H 1.07992 * 120.00507 * 217.09511 * 11 10 8 13 13 C 1.38968 * 119.99702 * 37.08976 * 11 10 8 14 14 N 1.31417 * 120.00352 * 7.24376 * 13 11 10 15 15 Si 1.86805 * 120.00082 * 187.24377 * 13 11 10 16 16 H 1.48507 * 109.47079 * 64.99790 * 15 13 11 17 17 H 1.48500 * 109.47197 * 184.99929 * 15 13 11 18 18 H 1.48496 * 109.47156 * 305.00319 * 15 13 11 19 19 C 1.46497 * 120.00067 * 6.37263 * 10 8 7 20 20 C 1.50703 * 109.47068 * 87.93360 * 19 10 8 21 21 O 1.20817 * 120.00322 * 0.02562 * 20 19 10 22 22 O 1.34239 * 119.99705 * 179.97438 * 20 19 10 23 23 C 1.45192 * 116.99616 * 180.02562 * 22 20 19 24 24 C 1.34689 * 124.85440 * 270.29635 * 3 2 1 25 25 C 1.50690 * 125.80827 * 0.04494 * 24 3 2 26 26 H 1.09000 * 109.47033 * 299.99705 * 1 2 3 27 27 H 1.09003 * 109.46971 * 60.00140 * 1 2 3 28 28 H 1.09001 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47033 * 240.00295 * 2 1 3 30 30 H 1.08999 * 109.47013 * 120.00612 * 2 1 3 31 31 H 1.09004 * 109.46908 * 273.84567 * 5 4 3 32 32 H 1.08999 * 109.47492 * 33.84529 * 5 4 3 33 33 H 1.08998 * 109.47166 * 153.84776 * 5 4 3 34 34 H 1.08002 * 126.82728 * 180.02562 * 6 4 3 35 35 H 0.96998 * 120.00324 * 184.75766 * 14 13 11 36 36 H 1.09003 * 109.47417 * 207.93255 * 19 10 8 37 37 H 1.09007 * 109.46885 * 327.93719 * 19 10 8 38 38 H 1.09007 * 109.47290 * 299.99879 * 23 22 20 39 39 H 1.09004 * 109.47650 * 60.00106 * 23 22 20 40 40 H 1.09000 * 109.47059 * 180.02562 * 23 22 20 41 41 H 1.08999 * 109.47607 * 270.21035 * 25 24 3 42 42 H 1.08997 * 109.47648 * 30.21628 * 25 24 3 43 43 H 1.09008 * 109.47337 * 150.21495 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2787 2.1162 1.1199 5 6 2.1097 1.6400 2.5397 6 6 2.7100 3.3350 0.7498 7 6 2.7124 3.3441 -0.7172 8 6 3.1069 4.4583 -1.5943 9 8 3.4799 4.2353 -2.7305 10 7 3.0547 5.7256 -1.1387 11 6 3.2954 6.7704 -1.9912 12 1 3.8304 7.6407 -1.6412 13 6 2.8512 6.7103 -3.3066 14 7 2.0796 5.7199 -3.6950 15 14 3.3507 8.0373 -4.5227 16 1 4.8194 7.9854 -4.7365 17 1 2.6542 7.8122 -5.8148 18 1 2.9758 9.3692 -3.9837 19 6 2.7407 5.9859 0.2684 20 6 4.0114 5.9668 1.0785 21 8 5.0706 5.7578 0.5361 22 8 3.9664 6.1831 2.4026 23 6 5.2289 6.1506 3.1189 24 6 2.2695 2.1088 -1.1053 25 6 2.0954 1.6412 -2.5271 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.0808 1.8066 2.8587 32 1 2.3399 0.5761 2.5959 33 1 2.7862 2.1930 3.1913 34 1 2.9976 4.1458 1.4028 35 1 1.8260 5.6397 -4.6278 36 1 2.2660 6.9628 0.3601 37 1 2.0628 5.2163 0.6377 38 1 5.6904 5.1705 2.9977 39 1 5.8933 6.9169 2.7194 40 1 5.0510 6.3396 4.1775 41 1 3.0208 1.1819 -2.8746 42 1 1.2877 0.9107 -2.5731 43 1 1.8517 2.4927 -3.1625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120488300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:13 Heat of formation + Delta-G solvation = -36.561757 kcal Electronic energy + Delta-G solvation = -27132.320230 eV Core-core repulsion = 23373.470729 eV Total energy + Delta-G solvation = -3758.849500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98809 -39.81831 -37.68929 -35.77666 -33.91258 -33.81477 -32.10882 -31.73414 -29.05962 -28.66673 -28.35963 -26.24924 -25.14072 -23.63426 -23.22344 -21.06393 -20.44224 -19.64760 -17.59141 -17.02561 -16.64280 -16.22559 -15.99467 -15.43393 -15.28377 -14.88747 -14.51585 -13.93489 -13.80611 -13.40154 -13.23477 -13.02590 -12.89855 -12.76039 -12.59565 -12.51176 -12.19123 -11.90889 -11.85169 -11.72941 -11.44932 -11.26807 -11.25023 -11.15740 -10.83168 -10.77160 -10.69502 -10.45636 -10.31412 -10.06198 -9.83912 -8.83801 -7.92915 -7.84371 -7.28135 -6.98260 -5.84774 -3.71138 2.62681 2.90471 3.05172 3.24303 3.30230 3.42012 3.45325 3.48888 4.42140 4.69425 4.96138 5.01872 5.04948 5.15417 5.27595 5.34594 5.36067 5.42379 5.44306 5.46831 5.58352 5.59498 5.62841 5.67119 5.79040 5.84968 5.89974 6.00657 6.04461 6.09291 6.24702 6.25402 6.39158 6.56866 6.67768 6.89136 6.95415 7.49641 7.67376 7.75997 7.86146 8.36594 8.48943 9.19541 9.35248 9.78977 10.55932 11.13754 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.006623 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.061202 B = 4226.361722 C = 6244.780400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 N -0.444 5.444 4 C 0.000 4.000 5 C -0.076 4.076 6 C -0.193 4.193 7 C -0.184 4.184 8 C 0.544 3.456 9 O -0.506 6.506 10 N -0.438 5.438 11 C -0.328 4.328 12 H 0.077 0.923 13 C 0.049 3.951 14 N -0.817 5.817 15 Si 0.916 3.084 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.106 3.894 20 C 0.432 3.568 21 O -0.486 6.486 22 O -0.372 6.372 23 C 0.035 3.965 24 C 0.073 3.927 25 C -0.078 4.078 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.261 0.739 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 -9.214 13.066 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.123 5.123 4 C -0.108 4.108 5 C -0.134 4.134 6 C -0.217 4.217 7 C -0.193 4.193 8 C 0.333 3.667 9 O -0.382 6.382 10 N -0.160 5.160 11 C -0.455 4.455 12 H 0.095 0.905 13 C -0.160 4.160 14 N -0.453 5.453 15 Si 0.743 3.257 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.022 4.022 20 C 0.272 3.728 21 O -0.371 6.371 22 O -0.289 6.289 23 C -0.059 4.059 24 C -0.041 4.041 25 C -0.136 4.136 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.400 -9.783 12.134 15.954 hybrid contribution 0.573 0.622 -0.356 0.917 sum -2.827 -9.162 11.779 15.188 Atomic orbital electron populations 1.22161 0.94727 1.02366 1.03387 1.21704 0.95313 0.81638 1.03678 1.43455 1.52445 1.11205 1.05160 1.20017 1.09685 0.92847 0.88241 1.20232 1.02196 1.00595 0.90369 1.22169 1.08846 0.96502 0.94228 1.20846 1.10293 0.95527 0.92658 1.16779 0.82801 0.80811 0.86354 1.90577 1.46219 1.82577 1.18788 1.42804 1.64110 1.05315 1.03747 1.19006 1.35708 0.97652 0.93126 0.90541 1.25130 0.95469 0.97067 0.98379 1.70003 1.30088 1.28745 1.16443 0.86204 0.78727 0.80815 0.79920 1.20428 1.21261 1.20316 1.21527 0.90237 1.05039 0.85355 1.25484 0.94105 0.72801 0.80414 1.90660 1.32253 1.42956 1.71181 1.86555 1.35929 1.83369 1.23085 1.23101 0.84893 1.02159 0.95766 1.20138 1.03975 0.91407 0.88540 1.20347 1.00537 1.02433 0.90248 0.91945 0.91645 0.91257 0.89601 0.89801 0.91605 0.92425 0.90617 0.84389 0.92900 0.87747 0.86517 0.92444 0.92435 0.88880 0.91591 0.93313 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 37.16 0.38 -1.27 16 2 C 0.10 1.11 6.08 -4.04 -0.02 1.08 16 3 N -0.44 -7.15 2.69 -107.94 -0.29 -7.44 16 4 C 0.00 0.00 6.85 -81.86 -0.56 -0.56 16 5 C -0.08 -0.86 10.01 36.01 0.36 -0.50 16 6 C -0.19 -3.76 8.36 -37.49 -0.31 -4.07 16 7 C -0.18 -4.28 5.89 -103.35 -0.61 -4.89 16 8 C 0.54 15.15 6.61 -12.63 -0.08 15.07 16 9 O -0.51 -15.77 12.47 5.24 0.07 -15.70 16 10 N -0.44 -11.81 2.08 -117.40 -0.24 -12.06 16 11 C -0.33 -9.46 9.35 -14.98 -0.14 -9.60 16 12 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 13 C 0.05 1.42 4.76 -17.46 -0.08 1.33 16 14 N -0.82 -24.49 10.40 55.50 0.58 -23.92 16 15 Si 0.92 22.48 29.56 -169.99 -5.03 17.46 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.11 2.27 5.50 -5.19 -0.03 2.24 16 20 C 0.43 8.94 5.76 36.01 0.21 9.14 16 21 O -0.49 -11.94 16.15 -18.74 -0.30 -12.24 16 22 O -0.37 -6.21 10.42 -39.28 -0.41 -6.62 16 23 C 0.04 0.46 10.55 101.05 1.07 1.53 16 24 C 0.07 1.46 6.89 -81.85 -0.56 0.90 16 25 C -0.08 -1.46 9.13 36.00 0.33 -1.13 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.90 7.51 -51.93 -0.39 0.51 16 30 H 0.08 0.77 6.97 -51.93 -0.36 0.40 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.55 7.07 -51.93 -0.37 0.18 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.14 2.59 4.03 -52.49 -0.21 2.38 16 35 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 36 H 0.10 2.02 8.02 -51.93 -0.42 1.61 16 37 H 0.12 2.31 4.65 -51.93 -0.24 2.06 16 38 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 39 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.72 7.56 -51.93 -0.39 0.33 16 43 H 0.10 2.29 7.16 -51.92 -0.37 1.92 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -37.23 353.45 -6.47 -43.70 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.10 Total: 2.21 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.06 Total: 9.28 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.04 Total: -43.41 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.65 Total: -34.56 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.23 -6.47 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120488300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.138 kcal (2) G-P(sol) polarization free energy of solvation -37.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds