Wall clock time and date at job start Tue Mar 31 2020 09:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35973 * 117.00253 * 2 1 4 4 C 1.38721 * 119.97731 * 0.02562 * 3 2 1 5 5 C 1.38227 * 120.12629 * 179.76449 * 4 3 2 6 6 C 1.38522 * 120.06602 * 0.47092 * 5 4 3 7 7 O 1.36056 * 120.02410 * 179.78949 * 6 5 4 8 8 C 1.42898 * 117.00210 * 359.72277 * 7 6 5 9 9 C 1.39270 * 119.94343 * 359.51065 * 6 5 4 10 10 N 1.40116 * 120.05971 * 180.27664 * 9 6 5 11 11 C 1.34767 * 120.00249 * 204.77298 * 10 9 6 12 12 O 1.21290 * 120.00043 * 5.57696 * 11 10 9 13 13 C 1.50709 * 120.00276 * 185.58084 * 11 10 9 14 14 H 1.09000 * 109.46654 * 59.99575 * 13 11 10 15 15 C 1.53002 * 109.46922 * 300.00055 * 13 11 10 16 16 N 1.46500 * 109.47169 * 179.97438 * 13 11 10 17 17 C 1.46503 * 119.99743 * 60.00003 * 16 13 11 18 18 C 1.36927 * 120.00136 * 240.00074 * 16 13 11 19 19 H 1.08005 * 120.00271 * 24.96061 * 18 16 13 20 20 C 1.38813 * 119.99929 * 204.96434 * 18 16 13 21 21 N 1.31619 * 120.00173 * 5.22279 * 20 18 16 22 22 Si 1.86805 * 120.00009 * 185.22618 * 20 18 16 23 23 H 1.48499 * 109.46930 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47267 * 119.99669 * 22 20 18 25 25 H 1.48497 * 109.47224 * 239.99844 * 22 20 18 26 26 C 1.38624 * 119.97185 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47206 * 59.99161 * 1 2 3 28 28 H 1.08997 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46566 * 300.00266 * 1 2 3 30 30 H 1.08004 * 119.93152 * 0.02599 * 4 3 2 31 31 H 1.07999 * 119.96860 * 180.23232 * 5 4 3 32 32 H 1.09003 * 109.47260 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.46826 * 299.99436 * 8 7 6 34 34 H 1.09001 * 109.47260 * 59.99735 * 8 7 6 35 35 H 0.97002 * 119.99812 * 24.76826 * 10 9 6 36 36 H 1.08995 * 109.46835 * 180.02562 * 15 13 11 37 37 H 1.09002 * 109.46804 * 299.99997 * 15 13 11 38 38 H 1.08999 * 109.47211 * 59.99871 * 15 13 11 39 39 H 1.09001 * 109.46738 * 95.05777 * 17 16 13 40 40 H 1.09001 * 109.47309 * 215.05838 * 17 16 13 41 41 H 1.08999 * 109.47439 * 335.06446 * 17 16 13 42 42 H 0.96996 * 120.00045 * 179.97438 * 21 20 18 43 43 H 1.07995 * 120.03938 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2904 2.3746 0.0005 5 6 1.9148 3.6078 0.0055 6 6 3.2978 3.6855 0.0000 7 8 3.9115 4.8998 0.0005 8 6 3.0678 6.0531 0.0007 9 6 4.0596 2.5196 -0.0001 10 7 5.4587 2.5953 0.0002 11 6 6.1889 1.5737 -0.4889 12 8 5.6370 0.6339 -1.0211 13 6 7.6915 1.5989 -0.3746 14 1 7.9751 1.6457 0.6768 15 6 8.2380 2.8271 -1.1053 16 7 8.2475 0.3844 -0.9764 17 6 8.0050 0.0909 -2.3911 18 6 8.9937 -0.4763 -0.2167 19 1 8.8559 -0.5098 0.8540 20 6 9.9274 -1.3057 -0.8226 21 7 10.1691 -1.1935 -2.1115 22 14 10.8407 -2.5814 0.1913 23 1 10.3910 -2.5050 1.6045 24 1 10.5574 -3.9364 -0.3462 25 1 12.3002 -2.3166 0.1218 26 6 3.4307 1.2833 -0.0005 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 0.2119 2.3164 0.0014 31 1 1.3238 4.5118 0.0097 32 1 3.6827 6.9532 0.0006 33 1 2.4388 6.0433 -0.8896 34 1 2.4383 6.0427 0.8905 35 1 5.9016 3.3831 0.3525 36 1 9.3247 2.8450 -1.0231 37 1 7.9543 2.7803 -2.1568 38 1 7.8243 3.7305 -0.6572 39 1 8.8422 0.4554 -2.9864 40 1 7.9043 -0.9860 -2.5267 41 1 7.0882 0.5849 -2.7128 42 1 10.8218 -1.7728 -2.5348 43 1 4.0190 0.3777 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120767103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:31 Heat of formation + Delta-G solvation = -42.014057 kcal Electronic energy + Delta-G solvation = -25937.139993 eV Core-core repulsion = 22178.054063 eV Total energy + Delta-G solvation = -3759.085930 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77811 -39.29897 -38.91598 -36.47320 -35.32521 -34.16654 -32.11344 -30.35922 -29.58902 -28.66389 -27.33443 -26.94417 -25.90067 -24.27198 -23.00237 -22.04392 -21.14027 -19.32112 -18.56232 -17.73595 -16.99410 -16.86177 -16.02492 -15.96172 -15.70076 -15.57741 -14.85844 -14.80454 -14.56329 -14.00667 -13.72066 -13.57204 -13.06736 -12.84785 -12.83963 -12.64500 -12.42162 -12.32575 -11.74422 -11.70983 -11.59450 -11.24868 -11.05178 -10.83832 -10.79376 -10.66281 -10.53619 -10.26925 -10.08403 -9.95190 -9.84921 -9.00760 -8.48650 -8.21090 -7.48986 -6.72404 -5.67580 -3.17729 1.28584 1.47668 3.14049 3.15397 3.21122 3.41284 3.47725 3.50044 3.60376 3.87875 4.51928 4.65931 4.84648 4.97448 4.98617 5.00001 5.05084 5.17312 5.29614 5.30180 5.37124 5.45101 5.50502 5.52414 5.86566 5.88928 5.97634 6.04926 6.14049 6.27063 6.36091 6.44463 6.55516 6.85935 6.89337 7.05699 7.27445 7.52169 7.61957 7.79705 7.83673 7.93566 8.42195 8.74040 9.27452 9.86846 10.36193 11.36044 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.003801 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.513476 B = 7365.163670 C = 8594.460903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.117 3.883 4 C -0.202 4.202 5 C -0.149 4.149 6 C 0.051 3.949 7 O -0.318 6.318 8 C 0.032 3.968 9 C 0.180 3.820 10 N -0.672 5.672 11 C 0.489 3.511 12 O -0.500 6.500 13 C 0.162 3.838 14 H 0.093 0.907 15 C -0.156 4.156 16 N -0.572 5.572 17 C 0.170 3.830 18 C -0.259 4.259 19 H 0.068 0.932 20 C 0.007 3.993 21 N -0.904 5.904 22 Si 0.909 3.091 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.289 1.289 26 C -0.134 4.134 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.412 0.588 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.027 0.973 40 H 0.043 0.957 41 H 0.004 0.996 42 H 0.252 0.748 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.147 13.707 5.168 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.071 3.929 4 C -0.222 4.222 5 C -0.169 4.169 6 C 0.004 3.996 7 O -0.233 6.233 8 C -0.063 4.063 9 C 0.083 3.917 10 N -0.318 5.318 11 C 0.275 3.725 12 O -0.372 6.372 13 C 0.048 3.952 14 H 0.111 0.889 15 C -0.215 4.215 16 N -0.292 5.292 17 C 0.026 3.974 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.738 3.262 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C -0.156 4.156 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.023 0.977 42 H 0.062 0.938 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.993 12.676 4.640 22.493 hybrid contribution 0.011 -0.002 0.575 0.575 sum -17.982 12.674 5.215 22.609 Atomic orbital electron populations 1.23007 0.78909 1.03708 1.00966 1.86130 1.20825 1.26694 1.88993 1.18694 0.91788 0.84089 0.98297 1.20879 0.99669 0.91609 1.10027 1.20698 0.92372 0.98214 1.05570 1.18546 0.90899 0.84357 1.05767 1.86015 1.35347 1.11966 1.89945 1.22974 0.95771 0.86615 1.00974 1.16898 0.83819 0.90320 1.00695 1.44031 1.03070 1.22328 1.62366 1.23277 0.92244 0.80875 0.76078 1.90613 1.72724 1.33693 1.40157 1.20258 0.86298 0.89700 0.98992 0.88913 1.22256 1.02482 0.95869 1.00917 1.43675 1.57527 1.19783 1.08207 1.20778 0.94359 0.99273 0.82954 1.19254 1.13123 1.15386 0.91062 0.91389 1.25071 0.97549 1.00379 0.96114 1.70097 1.35613 1.40066 1.09120 0.86122 0.79367 0.81213 0.79455 1.20285 1.21595 1.21624 1.20542 0.91697 0.98269 1.05049 0.92897 0.88427 0.92935 0.85537 0.85217 0.88416 0.92963 0.92988 0.75156 0.91197 0.92779 0.93640 0.95508 0.93775 0.97735 0.93758 0.81895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.55 10.50 -19.65 -0.21 -4.76 16 3 C 0.12 1.77 6.68 -39.26 -0.26 1.50 16 4 C -0.20 -2.45 9.03 -39.41 -0.36 -2.81 16 5 C -0.15 -1.73 9.03 -39.48 -0.36 -2.09 16 6 C 0.05 0.70 6.70 -39.09 -0.26 0.43 16 7 O -0.32 -3.80 9.91 -19.92 -0.20 -4.00 16 8 C 0.03 0.24 9.81 101.05 0.99 1.23 16 9 C 0.18 2.92 6.44 -83.51 -0.54 2.38 16 10 N -0.67 -10.88 5.21 -9.76 -0.05 -10.94 16 11 C 0.49 9.79 6.66 -10.99 -0.07 9.71 16 12 O -0.50 -11.86 11.77 5.55 0.07 -11.79 16 13 C 0.16 3.33 3.14 -69.08 -0.22 3.11 16 14 H 0.09 1.79 7.88 -51.93 -0.41 1.38 16 15 C -0.16 -2.73 9.09 37.16 0.34 -2.39 16 16 N -0.57 -14.88 2.59 -174.80 -0.45 -15.33 16 17 C 0.17 4.57 7.45 59.85 0.45 5.01 16 18 C -0.26 -7.26 9.59 -15.06 -0.14 -7.40 16 19 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 20 C 0.01 0.21 5.25 -17.43 -0.09 0.12 16 21 N -0.90 -26.83 10.43 55.49 0.58 -26.25 16 22 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C -0.13 -2.36 8.66 -39.27 -0.34 -2.70 16 27 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 30 H 0.13 1.16 6.28 -52.48 -0.33 0.83 16 31 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 34 H 0.05 0.32 7.65 -51.93 -0.40 -0.07 16 35 H 0.41 5.54 7.61 -40.82 -0.31 5.23 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 1.00 7.67 -51.93 -0.40 0.61 16 38 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 39 H 0.03 0.75 7.35 -51.93 -0.38 0.37 16 40 H 0.04 1.29 7.25 -51.93 -0.38 0.92 16 41 H 0.00 0.11 6.43 -51.93 -0.33 -0.23 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.16 3.34 5.78 -52.49 -0.30 3.03 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -34.34 349.80 -5.85 -40.20 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.96 Total: 3.02 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 0.13 Total: 7.39 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.08 Total: -52.51 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.34 Total: -20.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.34 -5.85 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120767103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.817 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds