Wall clock time and date at job start Tue Mar 31 2020 10:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47374 * 2 1 4 4 C 1.35993 * 117.00339 * 180.02562 * 3 2 1 5 5 C 1.38501 * 120.03720 * 0.02562 * 4 3 2 6 6 C 1.38801 * 119.93681 * 179.97438 * 5 4 3 7 7 N 1.40132 * 120.00087 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00200 * 213.31759 * 7 6 5 9 9 O 1.21591 * 119.99550 * 5.29116 * 8 7 6 10 10 N 1.34769 * 120.00121 * 185.29708 * 8 7 6 11 11 C 1.46496 * 119.99987 * 359.97438 * 10 8 7 12 12 C 1.46499 * 119.99927 * 179.97438 * 10 8 7 13 13 C 1.50699 * 109.47331 * 89.99645 * 12 10 8 14 14 H 1.08000 * 120.00183 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99843 * 180.02562 * 13 12 10 16 16 N 1.31518 * 120.00290 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99788 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47264 * 89.99972 * 17 15 13 19 19 H 1.48503 * 109.47266 * 209.99837 * 17 15 13 20 20 H 1.48501 * 109.47287 * 329.99366 * 17 15 13 21 21 C 1.38833 * 120.00135 * 0.02562 * 6 5 4 22 22 C 1.38197 * 120.07596 * 359.74747 * 21 6 5 23 23 C 1.38543 * 120.06797 * 0.50375 * 22 21 6 24 24 O 1.36073 * 120.00491 * 179.76992 * 23 22 21 25 25 C 1.42905 * 116.99743 * 359.72721 * 24 23 22 26 26 H 1.08999 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46554 * 299.99872 * 1 2 3 28 28 H 1.08999 * 109.47053 * 60.00174 * 1 2 3 29 29 H 1.09003 * 109.47150 * 239.99691 * 2 1 3 30 30 H 1.09000 * 109.47504 * 120.00108 * 2 1 3 31 31 H 1.08006 * 120.03388 * 359.95542 * 5 4 3 32 32 H 0.97001 * 120.00041 * 33.31075 * 7 6 5 33 33 H 1.09001 * 109.47331 * 90.00799 * 11 10 8 34 34 H 1.09006 * 109.47072 * 209.99775 * 11 10 8 35 35 H 1.08993 * 109.47530 * 330.00060 * 11 10 8 36 36 H 1.09001 * 109.47259 * 209.99929 * 12 10 8 37 37 H 1.09007 * 109.47273 * 329.99703 * 12 10 8 38 38 H 0.96999 * 119.99918 * 179.97438 * 16 15 13 39 39 H 1.08004 * 119.96157 * 179.97438 * 21 6 5 40 40 H 1.08007 * 119.96529 * 180.27522 * 22 21 6 41 41 H 1.09002 * 109.46906 * 299.99523 * 25 24 23 42 42 H 1.09003 * 109.47333 * 59.99982 * 25 24 23 43 43 H 1.09001 * 109.46741 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.1990 0.4276 -0.0016 6 6 5.5747 0.6119 -0.0027 7 7 6.4303 -0.4979 -0.0032 8 6 7.6148 -0.4360 0.6370 9 8 7.8995 0.5460 1.2949 10 7 8.4834 -1.4625 0.5478 11 6 8.1401 -2.6459 -0.2446 12 6 9.7711 -1.3950 1.2432 13 6 9.6245 -1.9692 2.6288 14 1 8.6679 -2.3471 2.9583 15 6 10.7116 -2.0121 3.4758 16 7 11.8766 -1.5524 3.0744 17 14 10.5300 -2.7245 5.1930 18 1 10.8143 -4.1815 5.1571 19 1 11.4875 -2.0558 6.1102 20 1 9.1437 -2.5024 5.6771 21 6 6.1031 1.8957 -0.0022 22 6 5.2608 2.9914 -0.0059 23 6 3.8872 2.8109 0.0005 24 8 3.0591 3.8906 0.0016 25 6 3.6746 5.1803 0.0020 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.7874 -0.5710 -0.0013 32 1 6.1701 -1.3107 -0.4643 33 1 8.4804 -2.5073 -1.2708 34 1 8.6251 -3.5232 0.1836 35 1 7.0594 -2.7878 -0.2363 36 1 10.5139 -1.9686 0.6889 37 1 10.0924 -0.3557 1.3127 38 1 12.6412 -1.5823 3.6704 39 1 7.1737 2.0384 -0.0026 40 1 5.6739 3.9893 -0.0100 41 1 4.2953 5.2864 0.8918 42 1 4.2944 5.2875 -0.8882 43 1 2.9036 5.9508 0.0034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125846016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:00 Heat of formation + Delta-G solvation = -63.394155 kcal Electronic energy + Delta-G solvation = -25305.363432 eV Core-core repulsion = 21545.350392 eV Total energy + Delta-G solvation = -3760.013040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70754 -39.60396 -38.50479 -36.98741 -34.86235 -33.96116 -32.52726 -31.91750 -29.97573 -29.00053 -27.76509 -26.89199 -25.72547 -24.04796 -23.31627 -21.97432 -21.46416 -19.55329 -18.59441 -17.76681 -17.33838 -16.56278 -16.32412 -16.18696 -15.95069 -15.48784 -14.95507 -14.77346 -14.49464 -14.27949 -14.01815 -13.42687 -13.26617 -13.07178 -12.82601 -12.69088 -12.54076 -12.21230 -12.16629 -12.08692 -11.89374 -11.37251 -11.31959 -11.20319 -11.02938 -10.92973 -10.83879 -10.59104 -10.16434 -9.72207 -9.53287 -9.26743 -8.50606 -8.44473 -7.75763 -7.29045 -6.05481 -4.10178 1.34589 1.57248 3.06349 3.19522 3.29511 3.35144 3.36620 3.42085 3.63799 4.04384 4.38415 4.51025 4.73999 4.75140 4.89295 5.00661 5.05471 5.13492 5.16784 5.28639 5.34505 5.37319 5.41637 5.46293 5.49792 5.59318 5.59768 5.81076 5.82241 5.88479 6.08419 6.39189 6.44362 6.57248 6.81442 7.06746 7.07792 7.32366 7.47128 7.62600 7.65540 7.92312 8.21316 8.54559 8.90519 9.21121 9.55303 11.02418 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.003185 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.692674 B = 8789.786403 C = 9321.937660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.305 6.305 4 C 0.120 3.880 5 C -0.210 4.210 6 C 0.189 3.811 7 N -0.695 5.695 8 C 0.697 3.303 9 O -0.566 6.566 10 N -0.612 5.612 11 C 0.084 3.916 12 C 0.260 3.740 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.117 4.117 22 C -0.148 4.148 23 C 0.069 3.931 24 O -0.311 6.311 25 C 0.027 3.973 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.401 0.599 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.823 4.247 -10.862 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.219 6.219 4 C 0.074 3.926 5 C -0.232 4.232 6 C 0.092 3.908 7 N -0.345 5.345 8 C 0.399 3.601 9 O -0.442 6.442 10 N -0.347 5.347 11 C -0.060 4.060 12 C 0.140 3.860 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.138 4.138 22 C -0.167 4.167 23 C 0.024 3.976 24 O -0.225 6.225 25 C -0.068 4.068 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.237 0.763 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.648 5.062 -10.303 21.898 hybrid contribution 0.224 -1.092 0.830 1.390 sum -18.424 3.970 -9.472 21.093 Atomic orbital electron populations 1.21751 0.92894 1.02614 1.03469 1.22766 0.95770 0.82438 1.01340 1.86153 1.18115 1.28509 1.89161 1.17750 0.82586 0.90597 1.01648 1.20641 0.92094 0.97953 1.12490 1.17147 0.88013 0.87157 0.98497 1.42993 1.18702 1.15457 1.57340 1.15911 0.79733 0.84426 0.80048 1.90909 1.76244 1.32582 1.44447 1.47511 1.19771 1.15674 1.51764 1.21592 0.99228 0.90105 0.95112 1.19259 0.76700 0.99050 0.90954 1.21457 0.96009 1.40484 0.98699 0.92499 1.24926 0.95098 0.95438 0.98606 1.69928 1.00522 1.46249 1.36701 0.86493 0.78056 0.78852 0.84002 1.20651 1.21047 1.19920 1.21000 1.01357 0.90028 1.01418 1.20936 0.90732 1.00021 1.05052 1.18117 0.88887 0.85161 1.05484 1.86135 1.33755 1.12857 1.89731 1.23012 0.99628 0.82895 1.01260 0.90543 0.91552 0.91607 0.92193 0.92071 0.84799 0.76259 0.93554 0.90267 0.93244 0.94710 0.93621 0.92685 0.83827 0.84640 0.92756 0.92891 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.31 -4.13 9.92 -34.32 -0.34 -4.47 16 4 C 0.12 1.75 6.70 -39.15 -0.26 1.49 16 5 C -0.21 -2.92 8.95 -39.28 -0.35 -3.27 16 6 C 0.19 3.04 6.28 -83.63 -0.53 2.51 16 7 N -0.69 -11.34 5.23 -14.20 -0.07 -11.41 16 8 C 0.70 14.83 8.02 -86.92 -0.70 14.13 16 9 O -0.57 -14.40 13.60 5.29 0.07 -14.33 16 10 N -0.61 -12.88 2.86 -188.74 -0.54 -13.42 16 11 C 0.08 1.27 10.25 59.84 0.61 1.89 16 12 C 0.26 6.73 5.16 -5.19 -0.03 6.71 16 13 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 17 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.12 -1.96 8.65 -39.38 -0.34 -2.30 16 22 C -0.15 -2.13 9.03 -39.48 -0.36 -2.49 16 23 C 0.07 1.02 6.70 -39.13 -0.26 0.76 16 24 O -0.31 -4.27 10.28 -34.57 -0.36 -4.62 16 25 C 0.03 0.26 9.81 101.05 0.99 1.25 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 31 H 0.13 1.51 6.30 -52.48 -0.33 1.18 16 32 H 0.40 5.10 6.51 -40.82 -0.27 4.83 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.05 0.59 6.29 -51.93 -0.33 0.26 16 36 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.05 1.33 7.42 -51.92 -0.39 0.95 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.14 2.67 6.40 -52.48 -0.34 2.33 16 40 H 0.14 1.61 6.29 -52.48 -0.33 1.28 16 41 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 42 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -35.17 358.99 -7.23 -42.39 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.06 Total: 2.29 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.05 Total: 7.02 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.12 Total: -50.59 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.62 Total: -23.42 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.17 -7.23 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125846016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.000 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds