Wall clock time and date at job start Tue Mar 31 2020 10:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46927 * 2 1 4 4 C 1.46498 * 119.99994 * 269.99599 * 3 2 1 5 5 C 1.50700 * 109.47666 * 270.00507 * 4 3 2 6 6 H 1.08004 * 119.99755 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00267 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99926 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99865 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46903 * 60.00038 * 9 7 5 11 11 H 1.48503 * 109.47068 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47374 * 300.00265 * 9 7 5 13 13 C 1.34772 * 119.99744 * 90.00675 * 3 2 1 14 14 O 1.21287 * 119.99743 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00379 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47499 * 180.02562 * 15 13 3 17 17 C 1.46892 * 111.00186 * 166.20399 * 16 15 13 18 18 C 1.52995 * 109.47498 * 285.99237 * 17 16 15 19 19 F 1.39896 * 109.47560 * 66.68274 * 18 17 16 20 20 F 1.39899 * 109.47632 * 186.68837 * 18 17 16 21 21 F 1.39907 * 109.47001 * 306.68452 * 18 17 16 22 22 C 1.46900 * 110.99690 * 290.16020 * 16 15 13 23 23 C 1.52999 * 117.49777 * 243.35201 * 22 16 15 24 24 C 1.52997 * 60.00064 * 252.51175 * 23 22 16 25 25 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47019 * 299.99921 * 1 2 3 27 27 H 1.09005 * 109.47212 * 59.99982 * 1 2 3 28 28 H 1.09002 * 109.47019 * 240.00079 * 2 1 3 29 29 H 1.08994 * 109.47185 * 120.00490 * 2 1 3 30 30 H 1.09000 * 109.47127 * 30.00597 * 4 3 2 31 31 H 1.09000 * 109.46958 * 150.00284 * 4 3 2 32 32 H 0.97001 * 119.99739 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.46958 * 60.00290 * 15 13 3 34 34 H 1.08999 * 109.46801 * 300.00270 * 15 13 3 35 35 H 1.08998 * 109.47123 * 165.98848 * 17 16 15 36 36 H 1.08998 * 109.47203 * 45.99126 * 17 16 15 37 37 H 1.08997 * 115.54946 * 29.06981 * 22 16 15 38 38 H 1.08996 * 117.49758 * 0.02562 * 23 22 16 39 39 H 1.09000 * 117.49644 * 145.02415 * 23 22 16 40 40 H 1.08999 * 117.50611 * 252.50960 * 24 23 22 41 41 H 1.09003 * 117.51767 * 107.47769 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3905 -2.8775 8 7 3.3494 3.1266 -3.6176 9 14 5.9138 2.0975 -3.4164 10 1 6.1416 0.6408 -3.5943 11 1 6.1613 2.7974 -4.7025 12 1 6.8410 2.6206 -2.3811 13 6 2.2430 2.0164 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9915 1.3062 2.4723 16 7 2.3093 2.2063 3.5889 17 6 1.7772 1.6836 4.8543 18 6 0.2593 1.8727 4.8863 19 9 -0.3324 1.0619 3.9118 20 9 -0.2286 1.5166 6.1482 21 9 -0.0492 3.2127 4.6282 22 6 3.7568 2.4384 3.6823 23 6 4.4692 1.9573 4.9480 24 6 4.2441 3.4532 4.7185 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 3.6756 3.5176 -4.4431 33 1 2.6213 0.4186 2.5301 34 1 0.9434 1.0124 2.5299 35 1 2.2280 2.2218 5.6880 36 1 2.0129 0.6226 4.9369 37 1 4.3044 2.3770 2.7418 38 1 3.8639 1.4683 5.7111 39 1 5.4858 1.5791 4.8403 40 1 5.1125 4.0591 4.4599 41 1 3.4906 3.9488 5.3306 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125952033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:10 Heat of formation + Delta-G solvation = -144.180838 kcal Electronic energy + Delta-G solvation = -27176.818006 eV Core-core repulsion = 22871.445052 eV Total energy + Delta-G solvation = -4305.372954 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.18949 -47.79126 -47.54957 -39.70763 -38.22127 -35.21851 -34.16487 -32.77708 -30.23114 -29.92345 -27.55251 -25.67828 -23.61180 -23.01258 -22.46541 -22.35274 -20.51793 -18.77761 -18.58630 -18.33858 -17.56045 -16.66276 -16.36332 -16.12535 -15.64998 -15.16874 -14.75208 -14.56453 -14.37354 -14.21818 -14.07069 -13.83133 -13.78542 -13.60471 -13.45097 -13.28257 -12.74718 -12.56907 -12.31786 -12.01592 -11.96298 -11.89591 -11.47237 -11.44365 -11.18137 -10.91650 -10.85934 -10.61774 -10.50994 -10.38048 -10.11495 -9.63794 -8.91295 -8.42475 -8.31312 -7.62825 -6.03219 -4.08143 2.54465 3.16432 3.31061 3.35923 3.37321 3.45924 3.63105 3.82098 3.89585 4.04342 4.29496 4.44458 4.65908 4.77060 4.90259 4.91941 4.93568 5.15911 5.28216 5.31403 5.38960 5.49314 5.51184 5.67012 5.79190 5.83101 5.89155 6.04041 6.06290 6.25185 6.51059 6.61109 6.75033 7.11649 7.47930 7.57549 7.93275 8.24901 8.45221 8.91402 9.14104 9.56865 11.04756 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.004368 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.836173 B = 6408.427374 C = 7367.067505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.519 6.519 15 C 0.011 3.989 16 N -0.481 5.481 17 C 0.003 3.997 18 C 0.456 3.544 19 F -0.182 7.182 20 F -0.186 7.186 21 F -0.168 7.168 22 C 0.042 3.958 23 C -0.228 4.228 24 C -0.165 4.165 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 -7.469 18.318 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.395 6.395 15 C -0.119 4.119 16 N -0.203 5.203 17 C -0.127 4.127 18 C 0.401 3.599 19 F -0.163 7.163 20 F -0.168 7.168 21 F -0.149 7.149 22 C -0.067 4.067 23 C -0.267 4.267 24 C -0.203 4.203 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.246 -6.276 17.996 19.526 hybrid contribution 1.042 -0.960 -0.238 1.436 sum -3.205 -7.236 17.758 19.442 Atomic orbital electron populations 1.22233 0.96747 1.01417 1.02472 1.21410 0.93588 0.84314 1.02491 1.48240 1.64149 1.13193 1.07604 1.19247 0.96134 0.93689 0.78011 1.21380 0.96937 1.31895 1.06267 0.92656 1.24925 0.97741 0.94954 0.96410 1.69923 1.35678 1.33328 1.14365 0.86582 0.84909 0.78187 0.77848 1.20314 1.21179 1.20249 1.19906 0.79190 0.87111 0.84462 1.90695 1.44633 1.17406 1.86718 1.22641 1.04225 0.94262 0.90774 1.61249 1.13242 1.45262 1.00552 1.23387 0.89168 1.02921 0.97215 1.20543 0.91834 0.74515 0.73006 1.93070 1.86509 1.73587 1.63141 1.93176 1.89980 1.91935 1.41664 1.93239 1.94324 1.33644 1.93677 1.22627 0.85517 1.03503 0.95021 1.23700 1.02834 0.98568 1.01580 1.23042 1.03195 0.91634 1.02424 0.92191 0.92992 0.91948 0.89905 0.92068 0.95057 0.93850 0.92673 0.91478 0.86639 0.85858 0.89667 0.84852 0.88676 0.88400 0.88025 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.49 2.46 -175.06 -0.43 -12.92 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 10.43 7.22 -10.99 -0.08 10.35 16 14 O -0.52 -12.91 14.75 5.55 0.08 -12.83 16 15 C 0.01 0.17 3.81 -4.98 -0.02 0.15 16 16 N -0.48 -6.77 4.13 -228.10 -0.94 -7.71 16 17 C 0.00 0.03 3.76 -3.83 -0.01 0.02 16 18 C 0.46 5.24 3.26 37.16 0.12 5.36 16 19 F -0.18 -2.21 14.48 2.25 0.03 -2.18 16 20 F -0.19 -1.96 17.32 2.25 0.04 -1.92 16 21 F -0.17 -2.35 17.12 2.25 0.04 -2.32 16 22 C 0.04 0.57 5.26 -67.71 -0.36 0.22 16 23 C -0.23 -2.26 9.53 -26.73 -0.25 -2.52 16 24 C -0.17 -1.91 9.95 -26.73 -0.27 -2.18 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.70 7.22 -51.93 -0.37 0.33 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.07 0.86 7.34 -51.93 -0.38 0.48 16 34 H 0.12 1.59 4.12 -51.93 -0.21 1.38 16 35 H 0.12 1.05 5.68 -51.93 -0.29 0.75 16 36 H 0.09 0.67 7.91 -51.93 -0.41 0.26 16 37 H 0.13 2.24 7.02 -51.93 -0.36 1.87 16 38 H 0.09 0.76 5.95 -51.93 -0.31 0.46 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.10 1.06 7.67 -51.93 -0.40 0.66 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -32.68 344.95 -6.77 -39.44 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.54 Total: 0.23 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.96 Total: 4.14 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.64 Total: -46.43 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.68 -6.77 -39.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125952033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.736 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds