Wall clock time and date at job start Tue Mar 31 2020 09:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47399 * 2 1 4 4 C 1.50696 * 109.47131 * 239.99508 * 2 1 3 5 5 H 1.08004 * 120.00508 * 275.02182 * 4 2 1 6 6 C 1.37881 * 120.00102 * 95.02369 * 4 2 1 7 7 N 1.31516 * 120.00368 * 184.58519 * 6 4 2 8 8 Si 1.86806 * 119.99627 * 4.58849 * 6 4 2 9 9 H 1.48497 * 109.47234 * 84.80273 * 8 6 4 10 10 H 1.48498 * 109.46807 * 204.80292 * 8 6 4 11 11 H 1.48506 * 109.46863 * 324.80365 * 8 6 4 12 12 N 1.46509 * 109.46500 * 120.00077 * 2 1 3 13 13 C 1.34775 * 119.99753 * 275.26944 * 12 2 1 14 14 O 1.21591 * 119.99920 * 359.73130 * 13 12 2 15 15 N 1.34768 * 120.00031 * 179.72718 * 13 12 2 16 16 C 1.46498 * 120.00416 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.47030 * 325.00602 * 16 15 13 18 18 C 1.53002 * 109.47481 * 204.99849 * 16 15 13 19 19 C 1.54268 * 110.03004 * 171.92832 * 18 16 15 20 20 C 1.54891 * 104.19498 * 217.10437 * 19 18 16 21 21 C 1.54896 * 102.74760 * 37.94742 * 20 19 18 22 22 C 1.53878 * 110.02883 * 54.76701 * 18 16 15 23 23 C 1.53000 * 109.47075 * 84.99815 * 16 15 13 24 24 F 1.39904 * 109.47153 * 64.90349 * 23 16 15 25 25 F 1.39907 * 109.47286 * 184.90352 * 23 16 15 26 26 F 1.39899 * 109.47287 * 304.90008 * 23 16 15 27 27 H 1.08994 * 109.47366 * 295.18846 * 1 2 3 28 28 H 1.09009 * 109.46649 * 55.17884 * 1 2 3 29 29 H 1.08999 * 109.47409 * 175.18042 * 1 2 3 30 30 H 0.96994 * 119.99480 * 179.97438 * 7 6 4 31 31 H 0.96994 * 119.99765 * 95.00076 * 12 2 1 32 32 H 0.97003 * 120.00194 * 359.97438 * 15 13 12 33 33 H 1.08998 * 110.01408 * 293.37410 * 18 16 15 34 34 H 1.08994 * 110.48972 * 335.78641 * 19 18 16 35 35 H 1.09005 * 110.48365 * 98.43474 * 19 18 16 36 36 H 1.08999 * 110.75924 * 279.63429 * 20 19 18 37 37 H 1.09002 * 110.91185 * 156.33181 * 20 19 18 38 38 H 1.08997 * 110.48656 * 203.38036 * 21 20 19 39 39 H 1.08996 * 110.59719 * 80.78724 * 21 20 19 40 40 H 1.09002 * 110.02872 * 238.57114 * 22 18 16 41 41 H 1.08998 * 110.02996 * 359.94858 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1352 -1.7856 -1.2290 6 6 2.3607 0.0120 -2.3579 7 7 2.7127 -0.6132 -3.4601 8 14 2.3058 1.8788 -2.3198 9 1 3.5871 2.4009 -1.7804 10 1 2.1008 2.3961 -3.6966 11 1 1.1856 2.3234 -1.4520 12 7 2.0182 -0.6907 1.1963 13 6 2.1417 -0.0197 2.3586 14 8 1.8526 1.1601 2.4131 15 7 2.5856 -0.6563 3.4603 16 6 2.7193 0.0729 4.7239 17 1 3.0309 1.0975 4.5209 18 6 3.7674 -0.6147 5.6012 19 6 4.0659 0.2497 6.8436 20 6 5.5869 0.0700 7.0748 21 6 6.1503 0.0369 5.6323 22 6 5.0927 -0.7499 4.8310 23 6 1.3733 0.0839 5.4512 24 9 1.0267 -1.2230 5.8108 25 9 1.4714 0.8737 6.6019 26 9 0.3909 0.6112 4.6062 27 1 -0.3634 0.4373 0.9299 28 1 -0.3633 0.5869 -0.8437 29 1 -0.3634 -1.0240 -0.0863 30 1 2.9434 -0.1048 -4.2534 31 1 2.2489 -1.6318 1.1527 32 1 2.8158 -1.5976 3.4170 33 1 3.4109 -1.5984 5.9067 34 1 3.8310 1.2956 6.6461 35 1 3.5039 -0.1126 7.7044 36 1 5.7911 -0.8681 7.5908 37 1 5.9981 0.9125 7.6308 38 1 7.1093 -0.4806 5.6091 39 1 6.2537 1.0477 5.2377 40 1 5.3799 -1.7992 4.7635 41 1 4.9888 -0.3265 3.8320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127318813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:01 Heat of formation + Delta-G solvation = -204.133089 kcal Electronic energy + Delta-G solvation = -27256.534258 eV Core-core repulsion = 22948.561580 eV Total energy + Delta-G solvation = -4307.972679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.98919 -47.54121 -47.37507 -39.87508 -38.44294 -35.33315 -34.33185 -32.42156 -30.90437 -29.19292 -28.75997 -26.97636 -25.29873 -23.12700 -21.47671 -20.83023 -20.29195 -19.75942 -18.58884 -18.30486 -18.08626 -17.82330 -16.56834 -16.26361 -15.51576 -15.08789 -14.76150 -14.46308 -14.29831 -14.19961 -13.98933 -13.90060 -13.61575 -13.54442 -13.48758 -13.30807 -12.75029 -12.53536 -12.44671 -12.37860 -11.63742 -11.49515 -11.32596 -11.27070 -11.21122 -11.08936 -10.92388 -10.79978 -10.70051 -10.55935 -9.90594 -9.61117 -9.23397 -9.13344 -8.72064 -8.05895 -6.24693 -4.28354 2.69087 2.92423 3.27376 3.34259 3.42438 3.64356 3.81368 3.99999 4.29230 4.32002 4.32479 4.37747 4.59938 4.80264 4.94236 5.04738 5.19936 5.20532 5.23923 5.33412 5.44229 5.46645 5.66769 5.69193 5.87022 5.93643 6.09104 6.09900 6.32554 6.40837 6.56237 6.70956 6.87175 7.10431 7.32515 7.48463 7.57018 8.23799 8.67109 8.77785 9.13717 9.37929 10.86910 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.004273 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.576638 B = 6551.330088 C = 7324.917226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.248 3.752 3 H 0.050 0.950 4 C -0.529 4.529 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.715 5.715 13 C 0.694 3.306 14 O -0.590 6.590 15 N -0.745 5.745 16 C 0.137 3.863 17 H 0.128 0.872 18 C -0.103 4.103 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.119 4.119 23 C 0.432 3.568 24 F -0.187 7.187 25 F -0.185 7.185 26 F -0.168 7.168 27 H 0.030 0.970 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.268 0.732 31 H 0.390 0.610 32 H 0.402 0.598 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.366 -1.396 21.114 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.145 3.855 3 H 0.068 0.932 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.367 5.367 13 C 0.394 3.606 14 O -0.468 6.468 15 N -0.402 5.402 16 C 0.027 3.973 17 H 0.146 0.854 18 C -0.122 4.122 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.163 4.163 22 C -0.156 4.156 23 C 0.375 3.625 24 F -0.169 7.169 25 F -0.166 7.166 26 F -0.149 7.149 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.223 0.777 32 H 0.237 0.763 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.100 -0.273 20.860 21.261 hybrid contribution -0.156 -0.011 -0.058 0.167 sum 3.945 -0.284 20.802 21.174 Atomic orbital electron populations 1.22238 0.98688 1.00503 0.99337 1.19036 0.90729 0.94039 0.81647 0.93205 1.21008 1.45214 0.95623 0.94864 0.90353 1.24933 0.93540 0.98659 0.95147 1.69880 1.44576 1.36233 1.01809 0.86886 0.79849 0.85779 0.77344 1.19879 1.21212 1.18395 1.45942 1.68669 1.13639 1.08413 1.16244 0.78385 0.85514 0.80483 1.90897 1.56999 1.14346 1.84550 1.45103 1.73526 1.13961 1.07563 1.21955 0.89217 1.01611 0.84482 0.85400 1.22132 0.94851 1.00104 0.95135 1.22530 0.96716 1.00243 0.96404 1.22487 0.94821 1.01796 0.96920 1.22373 0.98196 1.00687 0.95042 1.22183 0.92614 1.01163 0.99652 1.21458 0.89931 0.73362 0.77720 1.93137 1.93654 1.37740 1.92379 1.93149 1.96390 1.74858 1.52233 1.93272 1.64995 1.86247 1.70398 0.95079 0.92923 0.93514 0.92218 0.77690 0.76342 0.89196 0.90559 0.90903 0.91413 0.91337 0.91502 0.91376 0.91076 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.46 37.16 0.35 -2.97 16 2 C 0.25 5.88 2.22 -69.08 -0.15 5.73 16 3 H 0.05 1.29 4.75 -51.93 -0.25 1.05 16 4 C -0.53 -14.04 9.05 -34.44 -0.31 -14.36 16 5 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -25.92 13.96 55.43 0.77 -25.14 16 8 Si 0.87 21.49 26.98 -169.99 -4.59 16.91 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.26 -6.33 6.83 56.52 0.39 -5.94 16 12 N -0.71 -14.14 5.07 -59.81 -0.30 -14.45 16 13 C 0.69 13.11 7.95 -86.93 -0.69 12.42 16 14 O -0.59 -13.39 14.62 5.29 0.08 -13.31 16 15 N -0.74 -10.18 4.13 -58.68 -0.24 -10.43 16 16 C 0.14 1.69 1.51 -67.93 -0.10 1.59 16 17 H 0.13 1.75 7.43 -51.93 -0.39 1.36 16 18 C -0.10 -0.93 2.46 -89.50 -0.22 -1.15 16 19 C -0.12 -1.00 4.82 -25.07 -0.12 -1.12 16 20 C -0.12 -0.87 6.91 -24.73 -0.17 -1.04 16 21 C -0.13 -0.99 6.83 -25.07 -0.17 -1.16 16 22 C -0.12 -1.03 6.09 -25.61 -0.16 -1.19 16 23 C 0.43 5.89 2.83 37.16 0.11 5.99 16 24 F -0.19 -2.43 16.49 2.25 0.04 -2.40 16 25 F -0.18 -2.33 15.05 2.25 0.03 -2.29 16 26 F -0.17 -2.92 15.55 2.25 0.04 -2.89 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 1.18 8.14 -51.92 -0.42 0.75 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.39 6.70 8.61 -40.82 -0.35 6.35 16 32 H 0.40 4.36 8.54 -40.82 -0.35 4.01 16 33 H 0.09 0.75 7.52 -51.93 -0.39 0.36 16 34 H 0.08 0.67 7.27 -51.93 -0.38 0.30 16 35 H 0.07 0.57 7.99 -51.93 -0.41 0.16 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.83 7.18 -51.93 -0.37 0.46 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -31.34 339.27 -6.64 -37.98 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.84 Total: 5.99 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.74 Total: 4.91 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.23 Total: -50.02 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 0.11 Total: -7.57 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.59 Total: 16.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.34 -6.64 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127318813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.152 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds