Wall clock time and date at job start Tue Mar 31 2020 09:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47136 * 2 1 4 4 C 1.36939 * 119.99702 * 275.65815 * 3 2 1 5 5 H 1.07998 * 120.00056 * 34.09630 * 4 3 2 6 6 C 1.38808 * 119.99657 * 214.09001 * 4 3 2 7 7 N 1.31619 * 120.00455 * 22.81487 * 6 4 3 8 8 Si 1.86800 * 120.00006 * 202.81481 * 6 4 3 9 9 H 1.48496 * 109.47347 * 89.99966 * 8 6 4 10 10 H 1.48505 * 109.47300 * 210.00412 * 8 6 4 11 11 H 1.48504 * 109.47079 * 330.00303 * 8 6 4 12 12 C 1.46499 * 119.99887 * 95.65995 * 3 2 1 13 13 C 1.50698 * 109.47038 * 270.00182 * 12 3 2 14 14 C 1.38249 * 119.92934 * 90.00035 * 13 12 3 15 15 C 1.38240 * 120.14756 * 180.02562 * 14 13 12 16 16 C 1.38568 * 120.00099 * 359.97438 * 15 14 13 17 17 O 1.35992 * 120.07529 * 179.97438 * 16 15 14 18 18 C 1.42905 * 116.99889 * 0.02562 * 17 16 15 19 19 C 1.39158 * 119.85383 * 359.97438 * 16 15 14 20 20 O 1.35994 * 120.07324 * 180.02562 * 19 16 15 21 21 C 1.42900 * 116.99545 * 180.02562 * 20 19 16 22 22 C 1.50705 * 109.46849 * 180.02562 * 21 20 19 23 23 N 1.34772 * 119.99935 * 180.02562 * 22 21 20 24 24 O 1.21283 * 119.99852 * 359.72327 * 22 21 20 25 25 C 1.38252 * 119.92460 * 270.25605 * 13 12 3 26 26 H 1.08995 * 109.46701 * 299.99820 * 1 2 3 27 27 H 1.08989 * 109.47331 * 60.00023 * 1 2 3 28 28 H 1.09006 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46882 * 239.99823 * 2 1 3 30 30 H 1.08994 * 109.47555 * 120.00412 * 2 1 3 31 31 H 0.97002 * 120.00566 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47015 * 149.99846 * 12 3 2 33 33 H 1.08992 * 109.47015 * 30.00186 * 12 3 2 34 34 H 1.07997 * 119.92636 * 359.97438 * 14 13 12 35 35 H 1.08006 * 120.00277 * 179.97438 * 15 14 13 36 36 H 1.08999 * 109.46603 * 60.00512 * 18 17 16 37 37 H 1.09002 * 109.46720 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.47275 * 300.00656 * 18 17 16 39 39 H 1.09000 * 109.47553 * 60.00357 * 21 20 19 40 40 H 1.08999 * 109.47375 * 299.99608 * 21 20 19 41 41 H 0.97003 * 120.00427 * 359.97438 * 23 22 21 42 42 H 0.97006 * 119.99573 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.99945 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1363 2.0657 -1.1802 5 1 1.4314 1.8898 -1.9792 6 6 3.1620 2.9856 -1.3494 7 7 4.2523 2.8978 -0.6174 8 14 2.9948 4.3483 -2.6161 9 1 2.3678 5.5370 -1.9845 10 1 4.3391 4.7127 -3.1314 11 1 2.1447 3.8784 -3.7394 12 6 2.3805 2.0301 1.2625 13 6 1.1716 2.7238 1.8356 14 6 0.3282 2.0434 2.6940 15 6 -0.7823 2.6752 3.2219 16 6 -1.0518 3.9936 2.8913 17 8 -2.1441 4.6165 3.4093 18 6 -2.9709 3.8516 4.2887 19 6 -0.2022 4.6789 2.0281 20 8 -0.4622 5.9731 1.7011 21 6 0.4527 6.6132 0.8093 22 6 0.0064 8.0316 0.5646 23 7 0.7213 8.8319 -0.2508 24 8 -0.9992 8.4514 1.0972 25 6 0.9056 4.0377 1.4975 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.9692 3.5404 -0.7359 32 1 3.1680 2.7619 1.0822 33 1 2.7369 1.2793 1.9677 34 1 0.5369 1.0157 2.9521 35 1 -1.4399 2.1413 3.8919 36 1 -2.3842 3.5265 5.1479 37 1 -3.8048 4.4655 4.6290 38 1 -3.3545 2.9792 3.7597 39 1 0.4775 6.0715 -0.1363 40 1 1.4488 6.6174 1.2519 41 1 1.5233 8.4950 -0.6800 42 1 0.4337 9.7448 -0.4086 43 1 1.5636 4.5656 0.8232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130844555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:58 Heat of formation + Delta-G solvation = -62.937797 kcal Electronic energy + Delta-G solvation = -26413.408738 eV Core-core repulsion = 22653.415486 eV Total energy + Delta-G solvation = -3759.993251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.27081 -39.33762 -37.85429 -37.07959 -35.27906 -33.74277 -31.97470 -30.77148 -29.98373 -28.68524 -27.93100 -27.21654 -25.17568 -23.44798 -22.21581 -21.14315 -20.55484 -20.15574 -18.15789 -17.70629 -16.95304 -16.67706 -16.18122 -16.04130 -15.91408 -15.33991 -14.97834 -14.31565 -14.05858 -14.02180 -13.85258 -13.83033 -13.58592 -13.11084 -12.65572 -12.43726 -12.20175 -12.03524 -11.70983 -11.41414 -11.22884 -10.97140 -10.89037 -10.84624 -10.68864 -10.54890 -10.41995 -10.09117 -9.97946 -9.89881 -9.79343 -9.70484 -8.60805 -8.13972 -7.25497 -6.71036 -5.89588 -3.42327 1.83684 1.99675 2.56636 2.87150 3.16007 3.30452 3.33952 3.62531 3.99485 4.23782 4.39053 4.79250 5.15150 5.16500 5.18635 5.25048 5.30546 5.31245 5.52054 5.57001 5.61028 5.66433 5.88834 6.02398 6.03392 6.17034 6.35397 6.38840 6.57798 6.61611 6.65948 6.69426 6.88125 6.90451 7.10028 7.14734 7.25760 7.30013 7.41399 7.63581 7.73149 7.98402 8.18394 8.40337 9.07666 9.71427 10.28492 11.10101 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.009394 B = 0.007089 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.849009 B = 3949.103169 C = 6397.258520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 N -0.576 5.576 4 C -0.246 4.246 5 H 0.061 0.939 6 C 0.006 3.994 7 N -0.885 5.885 8 Si 0.890 3.110 9 H -0.288 1.288 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.171 3.829 13 C -0.062 4.062 14 C -0.116 4.116 15 C -0.176 4.176 16 C 0.079 3.921 17 O -0.310 6.310 18 C 0.031 3.969 19 C 0.090 3.910 20 O -0.285 6.285 21 C 0.037 3.963 22 C 0.524 3.476 23 N -0.853 5.853 24 O -0.522 6.522 25 C -0.150 4.150 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.255 0.745 32 H 0.109 0.891 33 H 0.035 0.965 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.405 0.595 42 H 0.405 0.595 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 3.466 5.447 8.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.017 3.983 3 N -0.295 5.295 4 C -0.375 4.375 5 H 0.079 0.921 6 C -0.194 4.194 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.215 1.215 10 H -0.216 1.216 11 H -0.202 1.202 12 C 0.045 3.955 13 C -0.065 4.065 14 C -0.136 4.136 15 C -0.194 4.194 16 C 0.034 3.966 17 O -0.224 6.224 18 C -0.065 4.065 19 C 0.045 3.955 20 O -0.198 6.198 21 C -0.042 4.042 22 C 0.307 3.693 23 N -0.419 5.419 24 O -0.396 6.396 25 C -0.170 4.170 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.054 0.946 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.237 0.763 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.424 3.917 5.882 9.550 hybrid contribution 0.262 0.652 -1.035 1.251 sum -6.162 4.568 4.847 9.074 Atomic orbital electron populations 1.22393 0.99922 0.98941 1.01750 1.20852 0.91820 0.86852 0.98813 1.43771 1.75522 1.08173 1.02067 1.19071 1.07126 1.18370 0.92981 0.92115 1.25048 0.94275 1.01656 0.98373 1.69977 1.04552 1.35938 1.42345 0.86470 0.77078 0.82726 0.81755 1.21524 1.21605 1.20197 1.20106 0.92622 0.96985 0.85783 1.20995 0.99481 0.92691 0.93379 1.20742 0.94602 0.99434 0.98778 1.20909 1.00707 0.93134 1.04694 1.18033 0.89126 0.91396 0.98084 1.86170 1.35382 1.39863 1.61030 1.22939 0.94040 0.96858 0.92666 1.18287 0.95388 0.83668 0.98143 1.86153 1.48809 1.22854 1.62028 1.22416 0.94220 0.91414 0.96173 1.20148 0.83448 0.87196 0.78463 1.43671 1.30998 1.16608 1.50659 1.90776 1.24676 1.75593 1.48599 1.21033 0.97021 0.96622 1.02292 0.93052 0.93379 0.94679 0.93761 0.94648 0.93445 0.87402 0.94641 0.86457 0.85749 0.93186 0.88890 0.93162 0.88611 0.88941 0.76680 0.76319 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 10.20 37.16 0.38 -2.71 16 2 C 0.14 2.88 6.44 -4.04 -0.03 2.86 16 3 N -0.58 -13.39 2.44 -174.61 -0.43 -13.82 16 4 C -0.25 -6.25 9.48 -15.06 -0.14 -6.39 16 5 H 0.06 1.59 7.93 -52.49 -0.42 1.17 16 6 C 0.01 0.15 4.95 -17.43 -0.09 0.07 16 7 N -0.89 -23.29 11.31 55.49 0.63 -22.66 16 8 Si 0.89 19.48 29.61 -169.99 -5.03 14.45 16 9 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.17 3.75 5.45 -5.20 -0.03 3.72 16 13 C -0.06 -1.23 5.44 -104.61 -0.57 -1.80 16 14 C -0.12 -2.03 7.86 -39.58 -0.31 -2.34 16 15 C -0.18 -2.87 9.04 -39.46 -0.36 -3.23 16 16 C 0.08 1.45 6.70 -39.12 -0.26 1.19 16 17 O -0.31 -5.48 10.28 -34.22 -0.35 -5.83 16 18 C 0.03 0.37 9.81 101.05 0.99 1.36 16 19 C 0.09 1.76 6.70 -39.12 -0.26 1.50 16 20 O -0.29 -5.60 9.45 -47.35 -0.45 -6.04 16 21 C 0.04 0.59 5.22 36.01 0.19 0.78 16 22 C 0.52 8.01 8.18 -10.98 -0.09 7.92 16 23 N -0.85 -8.81 8.87 31.22 0.28 -8.53 16 24 O -0.52 -10.21 17.34 -14.36 -0.25 -10.45 16 25 C -0.15 -2.98 8.69 -39.46 -0.34 -3.32 16 26 H 0.05 0.93 6.12 -51.93 -0.32 0.61 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 30 H 0.04 0.66 7.83 -51.93 -0.41 0.25 16 31 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.11 2.64 5.26 -51.93 -0.27 2.37 16 33 H 0.04 0.74 7.80 -51.93 -0.40 0.33 16 34 H 0.12 1.85 8.02 -52.49 -0.42 1.43 16 35 H 0.12 1.65 6.30 -52.48 -0.33 1.32 16 36 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.10 1.51 7.65 -51.93 -0.40 1.11 16 40 H 0.09 1.29 7.68 -51.93 -0.40 0.89 16 41 H 0.40 3.28 8.83 -40.82 -0.36 2.92 16 42 H 0.41 3.43 8.93 -40.82 -0.36 3.07 16 43 H 0.13 2.66 6.30 -52.49 -0.33 2.33 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -32.11 359.60 -7.14 -39.26 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.04 Total: 8.62 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.92 Total: -0.40 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.48 Total: -45.01 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.05 Total: -22.33 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.11 -7.14 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130844555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.681 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds