Wall clock time and date at job start Tue Mar 31 2020 10:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47434 * 2 1 4 4 C 1.46497 * 120.00044 * 280.95358 * 3 2 1 5 5 C 1.50700 * 109.46855 * 269.99586 * 4 3 2 6 6 H 1.08003 * 120.00161 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00335 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99970 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00539 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47152 * 59.99736 * 9 7 5 11 11 H 1.48500 * 109.47431 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47028 * 299.99935 * 9 7 5 13 13 C 1.34780 * 119.99609 * 100.94736 * 3 2 1 14 14 O 1.21588 * 119.99451 * 187.08048 * 13 3 2 15 15 C 1.47523 * 120.00384 * 7.07272 * 13 3 2 16 16 C 1.39997 * 120.59435 * 328.13400 * 15 13 3 17 17 C 1.38341 * 118.34321 * 180.21635 * 16 15 13 18 18 C 1.38356 * 119.45798 * 359.50314 * 17 16 15 19 19 N 1.31882 * 121.18821 * 0.25753 * 18 17 16 20 20 C 1.32237 * 121.79811 * 359.97438 * 19 18 17 21 21 O 1.35428 * 119.79763 * 180.02562 * 20 19 18 22 22 C 1.42902 * 117.00073 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.46828 * 179.97438 * 22 21 20 24 24 O 1.42899 * 109.47015 * 65.00520 * 23 22 21 25 25 C 1.42905 * 113.99795 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47186 * 59.99643 * 1 2 3 27 27 H 1.09003 * 109.47506 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47130 * 299.99622 * 1 2 3 29 29 H 1.09000 * 109.47130 * 240.00378 * 2 1 3 30 30 H 1.08999 * 109.47186 * 120.00357 * 2 1 3 31 31 H 1.08997 * 109.47674 * 29.99172 * 4 3 2 32 32 H 1.08999 * 109.47317 * 149.99620 * 4 3 2 33 33 H 0.96993 * 120.00240 * 179.97438 * 8 7 5 34 34 H 1.07997 * 120.82663 * 359.97097 * 16 15 13 35 35 H 1.08001 * 120.26953 * 179.78488 * 17 16 15 36 36 H 1.07997 * 119.40383 * 180.23069 * 18 17 16 37 37 H 1.08993 * 109.47067 * 300.00402 * 22 21 20 38 38 H 1.09002 * 109.46567 * 60.00303 * 22 21 20 39 39 H 1.09007 * 109.46831 * 185.00211 * 23 22 21 40 40 H 1.08994 * 109.47713 * 305.00436 * 23 22 21 41 41 H 1.09002 * 109.46972 * 60.00411 * 25 24 23 42 42 H 1.09004 * 109.46680 * 179.97438 * 25 24 23 43 43 H 1.08992 * 109.47160 * 299.99832 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0353 2.1522 -1.2456 5 6 3.3563 1.9515 -1.9426 6 1 4.1082 1.3139 -1.5016 7 6 3.6055 2.5828 -3.1427 8 7 2.6901 3.3597 -3.6795 9 14 5.2432 2.3347 -4.0063 10 1 5.4272 0.8937 -4.3140 11 1 5.2604 3.1161 -5.2690 12 1 6.3437 2.7967 -3.1227 13 6 2.4520 1.9426 1.1460 14 8 2.7356 3.1246 1.1746 15 6 2.5824 1.1230 2.3657 16 6 1.7173 0.0469 2.5969 17 6 1.8784 -0.6876 3.7581 18 6 2.8857 -0.3480 4.6437 19 7 3.6928 0.6670 4.4036 20 6 3.5794 1.4042 3.3116 21 8 4.4307 2.4371 3.1055 22 6 5.4223 2.6704 4.1077 23 6 6.2842 3.8681 3.7031 24 8 5.4800 5.0491 3.6849 25 6 6.1928 6.2320 3.3177 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.2274 1.8131 -1.8939 32 1 1.9005 3.2100 -1.0200 33 1 2.8655 3.8041 -4.5236 34 1 0.9410 -0.2013 1.8883 35 1 1.2262 -1.5220 3.9694 36 1 3.0131 -0.9243 5.5482 37 1 4.9345 2.8784 5.0599 38 1 6.0527 1.7868 4.2076 39 1 7.0948 3.9915 4.4214 40 1 6.7010 3.6971 2.7107 41 1 6.6080 6.1102 2.3173 42 1 5.5125 7.0837 3.3272 43 1 7.0011 6.4043 4.0282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133483913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:15 Heat of formation + Delta-G solvation = -49.399791 kcal Electronic energy + Delta-G solvation = -26171.932842 eV Core-core repulsion = 22412.526643 eV Total energy + Delta-G solvation = -3759.406199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81278 -38.78230 -38.09781 -37.19576 -35.39458 -33.18673 -32.11047 -31.29031 -30.15418 -29.67479 -27.15704 -26.26064 -24.47252 -23.84869 -22.96933 -22.22145 -22.01389 -19.19241 -18.29564 -16.99128 -16.82855 -16.60891 -16.31289 -15.77282 -15.42155 -15.35251 -15.04548 -14.77073 -14.37410 -14.28125 -13.96257 -13.38361 -13.32034 -12.97409 -12.47223 -12.33666 -12.25146 -12.10722 -11.98496 -11.56471 -11.48387 -11.34168 -11.15973 -10.91896 -10.86778 -10.71707 -10.53152 -10.11391 -9.81237 -9.66077 -9.59997 -9.52599 -8.79123 -8.39930 -8.35566 -7.58371 -6.00464 -4.04858 0.93834 1.31157 3.10461 3.33397 3.37514 3.39683 3.45711 3.80897 3.84013 4.12357 4.31769 4.47904 4.80577 4.94612 4.97989 5.03754 5.12237 5.20744 5.27839 5.33348 5.34137 5.42765 5.44823 5.52170 5.53432 5.58975 5.75167 5.76513 5.78401 5.93774 5.96826 6.10256 6.25386 6.40350 6.51785 7.11371 7.19170 7.41928 7.51469 7.60122 7.84559 7.96797 8.28227 8.46491 8.94513 9.16268 9.59800 11.07515 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.005826 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.518323 B = 4804.750078 C = 7020.809056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.554 3.446 14 O -0.514 6.514 15 C -0.191 4.191 16 C -0.039 4.039 17 C -0.226 4.226 18 C 0.151 3.849 19 N -0.550 5.550 20 C 0.367 3.633 21 O -0.263 6.263 22 C 0.070 3.930 23 C 0.061 3.939 24 O -0.379 6.379 25 C 0.033 3.967 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.263 0.737 34 H 0.170 0.830 35 H 0.140 0.860 36 H 0.159 0.841 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -7.554 16.392 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.046 4.046 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.339 3.661 14 O -0.390 6.390 15 C -0.197 4.197 16 C -0.064 4.064 17 C -0.247 4.247 18 C -0.006 4.006 19 N -0.275 5.275 20 C 0.188 3.812 21 O -0.167 6.167 22 C -0.005 4.005 23 C -0.015 4.015 24 O -0.297 6.297 25 C -0.064 4.064 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.187 0.813 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.740 -6.334 16.608 17.860 hybrid contribution 0.683 -0.493 -1.039 1.338 sum 2.424 -6.828 15.568 17.172 Atomic orbital electron populations 1.22275 0.96543 1.01705 1.02917 1.22149 0.93754 0.85122 1.03610 1.48092 1.61627 1.13070 1.09579 1.19268 0.97007 0.92414 0.78406 1.21411 1.00827 1.28937 1.05291 0.92588 1.24914 0.96994 0.94953 0.97149 1.69923 1.33859 1.30456 1.19118 0.86582 0.84176 0.78074 0.78722 1.20288 1.21158 1.20246 1.17681 0.78940 0.87064 0.82386 1.90810 1.48809 1.15017 1.84339 1.20334 0.99639 1.01068 0.98686 1.22563 0.97228 0.90650 0.95965 1.21902 1.02474 1.03994 0.96301 1.22514 0.89095 0.91033 0.97947 1.67419 1.30238 1.09445 1.20361 1.19790 0.87562 0.85809 0.88083 1.86567 1.41429 1.43682 1.45055 1.22688 0.89763 0.96588 0.91479 1.22590 0.92736 0.84800 1.01420 1.88009 1.36234 1.15546 1.89955 1.22735 0.96993 0.87826 0.98841 0.91163 0.91803 0.92615 0.90291 0.89557 0.94869 0.93577 0.92706 0.81334 0.84265 0.82381 0.90802 0.90234 0.91379 0.91943 0.93728 0.89549 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.16 37.16 0.34 -2.03 16 2 C 0.08 1.28 5.60 -4.04 -0.02 1.26 16 3 N -0.59 -13.14 2.47 -176.30 -0.44 -13.58 16 4 C 0.25 6.65 5.20 -5.20 -0.03 6.62 16 5 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.55 12.81 7.33 -12.47 -0.09 12.72 16 14 O -0.51 -14.20 15.40 -13.17 -0.20 -14.40 16 15 C -0.19 -3.56 5.58 -104.69 -0.58 -4.14 16 16 C -0.04 -0.54 7.58 -38.88 -0.29 -0.83 16 17 C -0.23 -2.44 10.09 -39.50 -0.40 -2.84 16 18 C 0.15 1.73 11.17 -17.49 -0.20 1.53 16 19 N -0.55 -8.27 9.21 -12.98 -0.12 -8.39 16 20 C 0.37 6.74 7.48 -16.61 -0.12 6.61 16 21 O -0.26 -5.23 8.66 -41.51 -0.36 -5.59 16 22 C 0.07 1.04 5.69 37.16 0.21 1.26 16 23 C 0.06 0.85 6.32 37.16 0.23 1.08 16 24 O -0.38 -6.29 10.67 -40.09 -0.43 -6.72 16 25 C 0.03 0.41 11.01 101.05 1.11 1.53 16 26 H 0.07 1.06 7.71 -51.93 -0.40 0.66 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.72 7.16 -51.93 -0.37 0.34 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.23 3.87 -52.13 -0.20 1.03 16 31 H 0.03 0.89 7.63 -51.93 -0.40 0.49 16 32 H 0.05 1.40 7.34 -51.93 -0.38 1.02 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.17 2.05 3.08 -52.49 -0.16 1.89 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -36.95 359.82 -6.77 -43.72 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.10 Total: -0.38 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.26 Total: 8.90 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.18 Total: -48.14 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.99 Total: -26.71 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.95 -6.77 -43.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133483913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.683 kcal (2) G-P(sol) polarization free energy of solvation -36.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds