Wall clock time and date at job start Tue Mar 31 2020 10:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47434 * 2 1 4 4 C 1.46497 * 120.00044 * 280.95358 * 3 2 1 5 5 C 1.50700 * 109.46855 * 269.99586 * 4 3 2 6 6 H 1.08003 * 120.00161 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00335 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99970 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00539 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47152 * 59.99736 * 9 7 5 11 11 H 1.48500 * 109.47431 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47028 * 299.99935 * 9 7 5 13 13 C 1.34780 * 119.99609 * 100.94736 * 3 2 1 14 14 O 1.21588 * 119.99451 * 187.08048 * 13 3 2 15 15 C 1.47523 * 120.00384 * 7.07272 * 13 3 2 16 16 C 1.39997 * 120.59435 * 328.13400 * 15 13 3 17 17 C 1.38341 * 118.34321 * 180.21635 * 16 15 13 18 18 C 1.38356 * 119.45798 * 359.50314 * 17 16 15 19 19 N 1.31882 * 121.18821 * 0.25753 * 18 17 16 20 20 C 1.32237 * 121.79811 * 359.97438 * 19 18 17 21 21 O 1.35428 * 119.79763 * 180.02562 * 20 19 18 22 22 C 1.42902 * 117.00073 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.46828 * 179.97438 * 22 21 20 24 24 O 1.42899 * 109.47015 * 65.00520 * 23 22 21 25 25 C 1.42905 * 113.99795 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47186 * 59.99643 * 1 2 3 27 27 H 1.09003 * 109.47506 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47130 * 299.99622 * 1 2 3 29 29 H 1.09000 * 109.47130 * 240.00378 * 2 1 3 30 30 H 1.08999 * 109.47186 * 120.00357 * 2 1 3 31 31 H 1.08997 * 109.47674 * 29.99172 * 4 3 2 32 32 H 1.08999 * 109.47317 * 149.99620 * 4 3 2 33 33 H 0.96993 * 120.00240 * 179.97438 * 8 7 5 34 34 H 1.07997 * 120.82663 * 359.97097 * 16 15 13 35 35 H 1.08001 * 120.26953 * 179.78488 * 17 16 15 36 36 H 1.07997 * 119.40383 * 180.23069 * 18 17 16 37 37 H 1.08993 * 109.47067 * 300.00402 * 22 21 20 38 38 H 1.09002 * 109.46567 * 60.00303 * 22 21 20 39 39 H 1.09007 * 109.46831 * 185.00211 * 23 22 21 40 40 H 1.08994 * 109.47713 * 305.00436 * 23 22 21 41 41 H 1.09002 * 109.46972 * 60.00411 * 25 24 23 42 42 H 1.09004 * 109.46680 * 179.97438 * 25 24 23 43 43 H 1.08992 * 109.47160 * 299.99832 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0353 2.1522 -1.2456 5 6 3.3563 1.9515 -1.9426 6 1 4.1082 1.3139 -1.5016 7 6 3.6055 2.5828 -3.1427 8 7 2.6901 3.3597 -3.6795 9 14 5.2432 2.3347 -4.0063 10 1 5.4272 0.8937 -4.3140 11 1 5.2604 3.1161 -5.2690 12 1 6.3437 2.7967 -3.1227 13 6 2.4520 1.9426 1.1460 14 8 2.7356 3.1246 1.1746 15 6 2.5824 1.1230 2.3657 16 6 1.7173 0.0469 2.5969 17 6 1.8784 -0.6876 3.7581 18 6 2.8857 -0.3480 4.6437 19 7 3.6928 0.6670 4.4036 20 6 3.5794 1.4042 3.3116 21 8 4.4307 2.4371 3.1055 22 6 5.4223 2.6704 4.1077 23 6 6.2842 3.8681 3.7031 24 8 5.4800 5.0491 3.6849 25 6 6.1928 6.2320 3.3177 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.2274 1.8131 -1.8939 32 1 1.9005 3.2100 -1.0200 33 1 2.8655 3.8041 -4.5236 34 1 0.9410 -0.2013 1.8883 35 1 1.2262 -1.5220 3.9694 36 1 3.0131 -0.9243 5.5482 37 1 4.9345 2.8784 5.0599 38 1 6.0527 1.7868 4.2076 39 1 7.0948 3.9915 4.4214 40 1 6.7010 3.6971 2.7107 41 1 6.6080 6.1102 2.3173 42 1 5.5125 7.0837 3.3272 43 1 7.0011 6.4043 4.0282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133483913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:14 Heat of formation + Delta-G solvation = -77.202093 kcal Electronic energy + Delta-G solvation = -26173.138440 eV Core-core repulsion = 22412.526643 eV Total energy + Delta-G solvation = -3760.611798 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06497 -40.31076 -39.34630 -38.39259 -37.09831 -35.14651 -33.61270 -32.40817 -31.63840 -30.84836 -29.12306 -27.32179 -25.91743 -25.25842 -24.39596 -23.70924 -23.18697 -20.72781 -19.52857 -18.66117 -18.25640 -18.08269 -17.89303 -17.01575 -16.88372 -16.54267 -16.45103 -16.06496 -15.98775 -15.74951 -15.35340 -14.77574 -14.51100 -14.40299 -14.10181 -13.76035 -13.48670 -13.33120 -13.30956 -13.19084 -13.07066 -12.66372 -12.57918 -12.49960 -12.45601 -12.22153 -12.02467 -11.89237 -11.75806 -11.05956 -10.82238 -10.72006 -10.65880 -10.35520 -9.61373 -9.36456 -8.24270 -6.39502 -0.21453 0.23872 1.32349 1.37272 1.44756 1.88157 2.01789 2.26684 2.39910 2.75589 2.81029 3.04342 3.24725 3.67030 3.77661 3.91364 3.99464 4.07402 4.09038 4.19575 4.31395 4.32774 4.39121 4.45369 4.47755 4.53087 4.58462 4.67394 4.77803 4.86400 4.93242 4.94420 5.03122 5.11274 5.21307 5.38867 5.48257 5.54770 5.83607 6.04730 6.12512 6.28610 6.65506 6.70774 6.80796 7.24983 7.44763 8.82689 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.005826 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.518323 B = 4804.750078 C = 7020.809056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 N -0.596 5.596 4 C 0.265 3.735 5 C -0.546 4.546 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.274 1.274 12 H -0.281 1.281 13 C 0.545 3.455 14 O -0.581 6.581 15 C -0.230 4.230 16 C -0.035 4.035 17 C -0.200 4.200 18 C 0.158 3.842 19 N -0.554 5.554 20 C 0.344 3.656 21 O -0.308 6.308 22 C 0.067 3.933 23 C 0.059 3.941 24 O -0.418 6.418 25 C 0.027 3.973 26 H 0.045 0.955 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.029 0.971 32 H -0.005 1.005 33 H 0.268 0.732 34 H 0.185 0.815 35 H 0.195 0.805 36 H 0.210 0.790 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.045 0.955 41 H 0.035 0.965 42 H 0.089 0.911 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -11.197 18.537 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.052 4.052 3 N -0.327 5.327 4 C 0.144 3.856 5 C -0.584 4.584 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.790 3.210 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.206 1.206 13 C 0.334 3.666 14 O -0.462 6.462 15 C -0.236 4.236 16 C -0.060 4.060 17 C -0.219 4.219 18 C 0.002 3.998 19 N -0.279 5.279 20 C 0.166 3.834 21 O -0.214 6.214 22 C -0.007 4.007 23 C -0.017 4.017 24 O -0.338 6.338 25 C -0.069 4.069 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.047 0.953 32 H 0.013 0.987 33 H 0.077 0.923 34 H 0.202 0.798 35 H 0.212 0.788 36 H 0.227 0.773 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.107 0.893 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.963 -10.036 18.760 21.366 hybrid contribution 0.550 0.557 -1.567 1.752 sum 2.514 -9.480 17.193 19.794 Atomic orbital electron populations 1.22230 0.93792 1.04474 1.02119 1.22561 0.95961 0.81911 1.04737 1.48100 1.61726 1.14968 1.07936 1.18702 0.96207 0.90414 0.80312 1.21646 1.01475 1.29340 1.05961 0.93375 1.25849 1.00980 0.94322 0.97821 1.70045 1.35934 1.30988 1.19587 0.85491 0.78819 0.79110 0.77538 1.18255 1.19858 1.20636 1.18486 0.77370 0.86862 0.83859 1.90747 1.51650 1.18060 1.85720 1.20082 1.02829 1.03319 0.97403 1.22776 0.96271 0.89274 0.97704 1.22471 1.01894 1.03773 0.93795 1.23541 0.87580 0.89398 0.99290 1.67530 1.31331 1.10220 1.18789 1.19956 0.87883 0.86426 0.89182 1.86520 1.42760 1.44922 1.47166 1.22935 0.89383 0.97721 0.90696 1.22798 0.93296 0.83852 1.01786 1.87952 1.38495 1.17155 1.90217 1.22900 0.97858 0.86786 0.99307 0.93611 0.87077 0.91855 0.91079 0.86507 0.95329 0.98698 0.92300 0.79800 0.78831 0.77332 0.90554 0.88234 0.86988 0.93626 0.94656 0.89283 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 9.16 71.98 0.66 -3.59 16 2 C 0.07 2.28 5.60 86.38 0.48 2.76 16 3 N -0.60 -27.96 2.47 -829.94 -2.05 -30.01 16 4 C 0.26 15.25 5.20 85.63 0.45 15.70 16 5 C -0.55 -33.27 9.39 25.60 0.24 -33.03 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.57 5.46 84.65 0.46 1.03 16 8 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 9 Si 0.97 46.51 29.54 68.60 2.03 48.54 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 13 C 0.55 26.92 7.33 86.69 0.64 27.56 16 14 O -0.58 -35.19 15.40 13.65 0.21 -34.98 16 15 C -0.23 -8.67 5.58 -19.91 -0.11 -8.79 16 16 C -0.04 -0.88 7.58 22.72 0.17 -0.71 16 17 C -0.20 -3.18 10.09 22.32 0.23 -2.95 16 18 C 0.16 2.83 11.17 84.71 0.95 3.78 16 19 N -0.55 -15.46 9.21 -308.00 -2.84 -18.29 16 20 C 0.34 12.78 7.48 85.13 0.64 13.42 16 21 O -0.31 -12.96 8.66 -64.73 -0.56 -13.52 16 22 C 0.07 2.05 5.69 71.98 0.41 2.46 16 23 C 0.06 1.67 6.32 71.98 0.45 2.13 16 24 O -0.42 -14.60 10.67 -144.34 -1.54 -16.14 16 25 C 0.03 0.72 11.01 113.37 1.25 1.97 16 26 H 0.04 1.38 7.71 -2.39 -0.02 1.37 16 27 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.51 7.16 -2.39 -0.02 1.49 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.12 3.10 3.87 -2.57 -0.01 3.09 16 31 H 0.03 1.64 7.63 -2.39 -0.02 1.62 16 32 H -0.01 -0.34 7.34 -2.39 -0.02 -0.36 16 33 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 34 H 0.19 3.84 3.08 -2.91 -0.01 3.83 16 35 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 38 H 0.10 2.49 8.10 -2.39 -0.02 2.47 16 39 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -91.11 359.82 3.46 -87.65 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.02 Total: 12.57 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 6.91 Total: 21.72 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -4.60 Total: -105.84 kcal Atomic # 8 Polarization: -62.75 SS G_CDS: -1.89 Total: -64.64 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -91.11 3.46 -87.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133483913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.451 kcal (2) G-P(sol) polarization free energy of solvation -91.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds