Wall clock time and date at job start Tue Mar 31 2020 10:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47276 * 2 1 4 4 C 1.36069 * 116.99907 * 179.97438 * 3 2 1 5 5 C 1.38543 * 120.00748 * 359.97438 * 4 3 2 6 6 C 1.38189 * 120.06965 * 179.97438 * 5 4 3 7 7 C 1.38833 * 120.07529 * 0.02562 * 6 5 4 8 8 N 1.40143 * 119.99478 * 179.97438 * 7 6 5 9 9 C 1.34763 * 120.00155 * 35.10070 * 8 7 6 10 10 O 1.21595 * 120.00210 * 355.38395 * 9 8 7 11 11 N 1.34775 * 120.00039 * 175.38460 * 9 8 7 12 12 C 1.46502 * 120.00090 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47545 * 324.99875 * 12 11 9 14 14 C 1.52998 * 109.47293 * 84.99780 * 12 11 9 15 15 C 1.50703 * 109.47393 * 204.99814 * 12 11 9 16 16 H 1.08004 * 119.99743 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00260 * 180.27217 * 15 12 11 18 18 N 1.31521 * 120.00101 * 359.72803 * 17 15 12 19 19 Si 1.86799 * 120.00258 * 179.72378 * 17 15 12 20 20 H 1.48506 * 109.46727 * 60.00104 * 19 17 15 21 21 H 1.48491 * 109.47360 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47079 * 300.00502 * 19 17 15 23 23 C 1.38801 * 120.00393 * 0.23528 * 7 6 5 24 24 C 1.38503 * 119.93602 * 359.48912 * 23 7 6 25 25 O 1.35994 * 120.03885 * 180.28441 * 24 23 7 26 26 C 1.42893 * 116.99987 * 0.24849 * 25 24 23 27 27 H 1.09005 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47328 * 300.00129 * 1 2 3 29 29 H 1.09003 * 109.46949 * 60.00147 * 1 2 3 30 30 H 1.08998 * 109.47328 * 239.99871 * 2 1 3 31 31 H 1.09003 * 109.46949 * 119.99853 * 2 1 3 32 32 H 1.08008 * 119.96588 * 359.95413 * 5 4 3 33 33 H 1.08003 * 119.96309 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99439 * 215.09955 * 8 7 6 35 35 H 0.97001 * 120.00379 * 359.97438 * 11 9 8 36 36 H 1.09006 * 109.47046 * 60.00253 * 14 12 11 37 37 H 1.09000 * 109.47538 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47480 * 300.00342 * 14 12 11 39 39 H 0.96998 * 120.00303 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.02841 * 179.74678 * 23 7 6 41 41 H 1.09007 * 109.47102 * 180.02562 * 26 25 24 42 42 H 1.09000 * 109.47216 * 300.00284 * 26 25 24 43 43 H 1.09000 * 109.47581 * 60.00323 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3553 1.5255 0.0005 5 6 4.1994 0.4268 0.0016 6 6 5.5696 0.6064 0.0016 7 6 6.1033 1.8880 0.0011 8 7 7.4931 2.0681 0.0017 9 6 8.2844 1.2074 -0.6685 10 8 7.8016 0.2279 -1.2034 11 7 9.6110 1.4321 -0.7459 12 6 10.4712 0.4968 -1.4750 13 1 10.0946 -0.5181 -1.3474 14 6 10.4718 0.8574 -2.9619 15 6 11.8762 0.5825 -0.9368 16 1 12.1055 1.2651 -0.1319 17 6 12.8701 -0.2069 -1.4753 18 7 12.5909 -1.0385 -2.4552 19 14 14.6133 -0.0950 -0.8134 20 1 14.6184 -0.4465 0.6294 21 1 15.4864 -1.0388 -1.5564 22 1 15.1210 1.2896 -0.9874 23 6 5.2606 2.9908 0.0055 24 6 3.8873 2.8113 -0.0003 25 8 3.0596 3.8904 -0.0018 26 6 3.6751 5.1800 -0.0027 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7860 -0.5710 0.0027 33 1 6.2259 -0.2513 0.0029 34 1 7.8855 2.8123 0.4845 35 1 9.9963 2.2136 -0.3196 36 1 10.8485 1.8723 -3.0895 37 1 11.1114 0.1612 -3.5044 38 1 9.4556 0.7954 -3.3512 39 1 13.2902 -1.5936 -2.8344 40 1 5.6754 3.9880 0.0093 41 1 2.9041 5.9506 -0.0035 42 1 4.2949 5.2875 0.8875 43 1 4.2958 5.2858 -0.8925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153937274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:12 Heat of formation + Delta-G solvation = -76.033543 kcal Electronic energy + Delta-G solvation = -25023.423692 eV Core-core repulsion = 21262.862567 eV Total energy + Delta-G solvation = -3760.561125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.71078 -39.53852 -38.53168 -36.99674 -34.88101 -33.92031 -32.41840 -31.74243 -30.21439 -29.31763 -28.21868 -26.84450 -25.26841 -24.00539 -22.87218 -21.62504 -21.05489 -19.85760 -18.61150 -18.29407 -17.66258 -16.55013 -16.30107 -16.03752 -15.63924 -15.55492 -14.95213 -14.86724 -14.50299 -14.29144 -14.10445 -13.38991 -13.34287 -13.11774 -12.78391 -12.53987 -12.37842 -12.26855 -12.03520 -11.78480 -11.51972 -11.30165 -11.13630 -11.03568 -10.99033 -10.87115 -10.72492 -10.34514 -10.24894 -9.63937 -9.32040 -9.07668 -8.58264 -8.54011 -7.99377 -7.34142 -6.14564 -4.24059 1.31411 1.54651 3.07242 3.19564 3.23895 3.27401 3.29661 3.32979 3.62629 4.00088 4.30305 4.72661 4.78306 4.87036 4.91147 4.98007 5.04601 5.08622 5.16610 5.18184 5.29424 5.36897 5.39669 5.46872 5.58443 5.61961 5.82919 5.88065 6.41701 6.43526 6.56870 6.78923 6.96386 7.01225 7.06281 7.11100 7.23078 7.43984 7.59602 7.61196 7.81422 7.97809 8.13310 8.70298 8.82606 9.21658 9.44403 10.91402 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024592 B = 0.002680 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.291845 B =10445.672002 C =11179.025249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.075 3.925 5 C -0.152 4.152 6 C -0.115 4.115 7 C 0.183 3.817 8 N -0.695 5.695 9 C 0.693 3.307 10 O -0.581 6.581 11 N -0.719 5.719 12 C 0.281 3.719 13 H 0.050 0.950 14 C -0.148 4.148 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.207 4.207 24 C 0.114 3.886 25 O -0.307 6.307 26 C 0.027 3.973 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.402 0.598 35 H 0.386 0.614 36 H 0.025 0.975 37 H 0.091 0.909 38 H 0.015 0.985 39 H 0.265 0.735 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.768 8.373 6.454 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.224 6.224 4 C 0.029 3.971 5 C -0.171 4.171 6 C -0.136 4.136 7 C 0.087 3.913 8 N -0.343 5.343 9 C 0.393 3.607 10 O -0.459 6.459 11 N -0.370 5.370 12 C 0.179 3.821 13 H 0.068 0.932 14 C -0.207 4.207 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.229 4.229 24 C 0.068 3.932 25 O -0.220 6.220 26 C -0.069 4.069 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.236 0.764 35 H 0.218 0.782 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.153 0.847 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.339 7.438 5.774 21.510 hybrid contribution 1.781 0.785 0.672 2.059 sum -17.558 8.222 6.446 20.432 Atomic orbital electron populations 1.21748 0.93000 1.02570 1.03381 1.22746 0.95666 0.82515 1.01339 1.86130 1.18249 1.28406 1.89598 1.18099 0.82968 0.91001 1.05006 1.20970 0.93463 0.97358 1.05337 1.21177 0.94338 0.97351 1.00720 1.17142 0.82162 0.92877 0.99135 1.42806 1.04148 1.32365 1.55000 1.16147 0.82255 0.82813 0.79442 1.90869 1.73810 1.29257 1.51952 1.45869 1.04404 1.29543 1.57171 1.18679 0.87312 0.88366 0.87734 0.93242 1.22109 0.98611 1.00482 0.99518 1.21167 0.92833 1.24052 1.19282 0.92129 1.24880 0.99185 0.94845 0.94779 1.69893 1.33627 1.23869 1.24633 0.86487 0.83524 0.77946 0.78997 1.20173 1.21106 1.20181 1.20676 0.91103 0.99017 1.12086 1.17809 0.88130 0.85205 1.02050 1.86158 1.33686 1.12932 1.89268 1.23033 0.99724 0.82837 1.01268 0.90574 0.91666 0.91625 0.92119 0.92214 0.84707 0.83295 0.76366 0.78177 0.95536 0.89063 0.96568 0.92461 0.84700 0.88457 0.92819 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.51 5.46 37.16 0.20 0.72 16 3 O -0.31 -4.18 9.92 -34.56 -0.34 -4.52 16 4 C 0.08 1.08 6.70 -39.13 -0.26 0.82 16 5 C -0.15 -2.14 9.03 -39.49 -0.36 -2.50 16 6 C -0.12 -1.87 8.69 -39.38 -0.34 -2.21 16 7 C 0.18 2.83 6.30 -83.63 -0.53 2.30 16 8 N -0.69 -10.68 5.35 -14.20 -0.08 -10.75 16 9 C 0.69 13.93 8.37 -86.93 -0.73 13.20 16 10 O -0.58 -13.87 13.44 5.28 0.07 -13.80 16 11 N -0.72 -14.73 5.07 -59.81 -0.30 -15.03 16 12 C 0.28 7.08 2.56 -69.08 -0.18 6.90 16 13 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 14 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 15 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -24.67 11.31 55.43 0.63 -24.04 16 19 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.21 -2.74 8.95 -39.28 -0.35 -3.09 16 24 C 0.11 1.60 6.70 -39.14 -0.26 1.34 16 25 O -0.31 -4.00 10.28 -34.32 -0.35 -4.35 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 31 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 32 H 0.14 1.58 6.29 -52.48 -0.33 1.25 16 33 H 0.15 2.73 6.22 -52.48 -0.33 2.41 16 34 H 0.40 4.69 8.84 -40.82 -0.36 4.33 16 35 H 0.39 6.69 8.56 -40.82 -0.35 6.34 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.14 1.41 6.30 -52.49 -0.33 1.08 16 41 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 43 H 0.05 0.43 7.67 -51.93 -0.40 0.04 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -32.51 357.75 -7.56 -40.08 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.07 Total: 9.64 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.48 Total: 2.01 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.25 Total: -49.83 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.62 Total: -22.67 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.51 -7.56 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153937274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.958 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds