Wall clock time and date at job start Tue Mar 31 2020 10:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47276 * 2 1 4 4 C 1.36069 * 116.99907 * 179.97438 * 3 2 1 5 5 C 1.38543 * 120.00748 * 359.97438 * 4 3 2 6 6 C 1.38189 * 120.06965 * 179.97438 * 5 4 3 7 7 C 1.38833 * 120.07529 * 0.02562 * 6 5 4 8 8 N 1.40143 * 119.99478 * 179.97438 * 7 6 5 9 9 C 1.34763 * 120.00155 * 35.10070 * 8 7 6 10 10 O 1.21595 * 120.00210 * 355.38395 * 9 8 7 11 11 N 1.34775 * 120.00039 * 175.38460 * 9 8 7 12 12 C 1.46502 * 120.00090 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47545 * 324.99875 * 12 11 9 14 14 C 1.52998 * 109.47293 * 84.99780 * 12 11 9 15 15 C 1.50703 * 109.47393 * 204.99814 * 12 11 9 16 16 H 1.08004 * 119.99743 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00260 * 180.27217 * 15 12 11 18 18 N 1.31521 * 120.00101 * 359.72803 * 17 15 12 19 19 Si 1.86799 * 120.00258 * 179.72378 * 17 15 12 20 20 H 1.48506 * 109.46727 * 60.00104 * 19 17 15 21 21 H 1.48491 * 109.47360 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47079 * 300.00502 * 19 17 15 23 23 C 1.38801 * 120.00393 * 0.23528 * 7 6 5 24 24 C 1.38503 * 119.93602 * 359.48912 * 23 7 6 25 25 O 1.35994 * 120.03885 * 180.28441 * 24 23 7 26 26 C 1.42893 * 116.99987 * 0.24849 * 25 24 23 27 27 H 1.09005 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47328 * 300.00129 * 1 2 3 29 29 H 1.09003 * 109.46949 * 60.00147 * 1 2 3 30 30 H 1.08998 * 109.47328 * 239.99871 * 2 1 3 31 31 H 1.09003 * 109.46949 * 119.99853 * 2 1 3 32 32 H 1.08008 * 119.96588 * 359.95413 * 5 4 3 33 33 H 1.08003 * 119.96309 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99439 * 215.09955 * 8 7 6 35 35 H 0.97001 * 120.00379 * 359.97438 * 11 9 8 36 36 H 1.09006 * 109.47046 * 60.00253 * 14 12 11 37 37 H 1.09000 * 109.47538 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47480 * 300.00342 * 14 12 11 39 39 H 0.96998 * 120.00303 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.02841 * 179.74678 * 23 7 6 41 41 H 1.09007 * 109.47102 * 180.02562 * 26 25 24 42 42 H 1.09000 * 109.47216 * 300.00284 * 26 25 24 43 43 H 1.09000 * 109.47581 * 60.00323 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3553 1.5255 0.0005 5 6 4.1994 0.4268 0.0016 6 6 5.5696 0.6064 0.0016 7 6 6.1033 1.8880 0.0011 8 7 7.4931 2.0681 0.0017 9 6 8.2844 1.2074 -0.6685 10 8 7.8016 0.2279 -1.2034 11 7 9.6110 1.4321 -0.7459 12 6 10.4712 0.4968 -1.4750 13 1 10.0946 -0.5181 -1.3474 14 6 10.4718 0.8574 -2.9619 15 6 11.8762 0.5825 -0.9368 16 1 12.1055 1.2651 -0.1319 17 6 12.8701 -0.2069 -1.4753 18 7 12.5909 -1.0385 -2.4552 19 14 14.6133 -0.0950 -0.8134 20 1 14.6184 -0.4465 0.6294 21 1 15.4864 -1.0388 -1.5564 22 1 15.1210 1.2896 -0.9874 23 6 5.2606 2.9908 0.0055 24 6 3.8873 2.8113 -0.0003 25 8 3.0596 3.8904 -0.0018 26 6 3.6751 5.1800 -0.0027 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7860 -0.5710 0.0027 33 1 6.2259 -0.2513 0.0029 34 1 7.8855 2.8123 0.4845 35 1 9.9963 2.2136 -0.3196 36 1 10.8485 1.8723 -3.0895 37 1 11.1114 0.1612 -3.5044 38 1 9.4556 0.7954 -3.3512 39 1 13.2902 -1.5936 -2.8344 40 1 5.6754 3.9880 0.0093 41 1 2.9041 5.9506 -0.0035 42 1 4.2949 5.2875 0.8875 43 1 4.2958 5.2858 -0.8925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153937274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:11 Heat of formation + Delta-G solvation = -98.079225 kcal Electronic energy + Delta-G solvation = -25024.379665 eV Core-core repulsion = 21262.862567 eV Total energy + Delta-G solvation = -3761.517098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88290 -40.92929 -39.47433 -38.26151 -36.66327 -35.31868 -34.25866 -32.58687 -31.35419 -30.88855 -29.41169 -27.80857 -27.31672 -24.85180 -24.27566 -22.80325 -22.39978 -21.54624 -19.87743 -19.65532 -18.80523 -18.09762 -17.34918 -17.17543 -17.16045 -16.59828 -16.37677 -16.21224 -15.84443 -15.72001 -15.20594 -15.01318 -14.39276 -14.24441 -14.08705 -13.87569 -13.63672 -13.29970 -13.19216 -12.99526 -12.90374 -12.84917 -12.71925 -12.32531 -12.26772 -12.19651 -12.14995 -11.96833 -11.70760 -11.16695 -11.10469 -10.73717 -10.58368 -9.83717 -9.57034 -8.50787 -8.16491 -6.33965 0.21223 0.38256 1.46257 1.48478 1.56056 1.72668 2.15853 2.28271 2.35379 2.43338 2.74956 3.13977 3.42983 3.78417 4.03825 4.09142 4.12926 4.24490 4.27718 4.37788 4.44898 4.45218 4.52848 4.65754 4.75848 4.79591 4.88676 4.93862 4.97698 5.10156 5.21878 5.25942 5.32477 5.34582 5.44741 5.60421 5.67149 5.79455 5.87045 6.10052 6.12068 6.26883 6.61677 6.73624 7.23817 7.34842 7.68006 8.89728 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024592 B = 0.002680 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.291845 B =10445.672002 C =11179.025249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.322 6.322 4 C 0.069 3.931 5 C -0.151 4.151 6 C -0.137 4.137 7 C 0.163 3.837 8 N -0.673 5.673 9 C 0.693 3.307 10 O -0.623 6.623 11 N -0.713 5.713 12 C 0.289 3.711 13 H 0.000 1.000 14 C -0.135 4.135 15 C -0.546 4.546 16 H 0.075 0.925 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.974 3.026 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.191 4.191 24 C 0.109 3.891 25 O -0.322 6.322 26 C 0.015 3.985 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.121 0.879 34 H 0.422 0.578 35 H 0.404 0.596 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.010 0.990 39 H 0.266 0.734 40 H 0.166 0.834 41 H 0.120 0.880 42 H 0.069 0.931 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.107 10.526 7.617 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 O -0.237 6.237 4 C 0.023 3.977 5 C -0.170 4.170 6 C -0.158 4.158 7 C 0.067 3.933 8 N -0.323 5.323 9 C 0.393 3.607 10 O -0.504 6.504 11 N -0.366 5.366 12 C 0.186 3.814 13 H 0.018 0.982 14 C -0.194 4.194 15 C -0.585 4.585 16 H 0.093 0.907 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.798 3.202 20 H -0.196 1.196 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.213 4.213 24 C 0.063 3.937 25 O -0.236 6.236 26 C -0.079 4.079 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.169 0.831 33 H 0.139 0.861 34 H 0.260 0.740 35 H 0.239 0.761 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.184 0.816 41 H 0.138 0.862 42 H 0.088 0.912 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.710 9.665 6.984 23.037 hybrid contribution 1.697 0.143 0.324 1.734 sum -18.013 9.808 7.309 21.774 Atomic orbital electron populations 1.21774 0.91205 1.04071 1.03188 1.23065 0.97130 0.81127 1.01999 1.86129 1.17614 1.30612 1.89386 1.18313 0.83523 0.91378 1.04459 1.21053 0.92602 0.98439 1.04906 1.21060 0.94994 0.97082 1.02684 1.17290 0.82024 0.93347 1.00654 1.42396 1.03933 1.31865 1.54073 1.16231 0.82205 0.82838 0.79400 1.90852 1.74534 1.31268 1.53733 1.45437 1.04389 1.29522 1.57233 1.18248 0.87755 0.87021 0.88415 0.98166 1.21929 0.97719 1.00530 0.99183 1.21501 0.93087 1.24278 1.19592 0.90682 1.25798 1.03482 0.94374 0.94933 1.70050 1.34888 1.24698 1.25939 0.85375 0.78211 0.78333 0.78270 1.19593 1.21301 1.18826 1.20828 0.90503 0.99594 1.10350 1.18010 0.88553 0.85732 1.01428 1.86153 1.34417 1.14076 1.88991 1.23384 1.00988 0.81189 1.02336 0.88225 0.91658 0.91982 0.91804 0.91202 0.83065 0.86134 0.73974 0.76060 0.94074 0.91369 0.97115 0.92521 0.81622 0.86203 0.91250 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.04 0.77 5.46 71.98 0.39 1.16 16 3 O -0.32 -8.44 9.92 -80.37 -0.80 -9.23 16 4 C 0.07 1.95 6.70 22.56 0.15 2.10 16 5 C -0.15 -4.27 9.03 22.33 0.20 -4.07 16 6 C -0.14 -4.58 8.69 22.40 0.19 -4.39 16 7 C 0.16 4.93 6.30 38.09 0.24 5.17 16 8 N -0.67 -20.10 5.35 -317.11 -1.70 -21.80 16 9 C 0.69 28.15 8.37 179.06 1.50 29.65 16 10 O -0.62 -30.99 13.44 -4.01 -0.05 -31.05 16 11 N -0.71 -29.16 5.07 -461.41 -2.34 -31.50 16 12 C 0.29 14.89 2.56 44.25 0.11 15.01 16 13 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 14 C -0.13 -6.84 9.26 71.98 0.67 -6.17 16 15 C -0.55 -28.43 8.73 25.60 0.22 -28.21 16 16 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 17 C 0.01 0.76 5.30 84.65 0.45 1.21 16 18 N -0.92 -52.29 11.31 21.45 0.24 -52.05 16 19 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 23 C -0.19 -4.70 8.95 22.47 0.20 -4.50 16 24 C 0.11 2.91 6.70 22.55 0.15 3.06 16 25 O -0.32 -7.74 10.28 -79.52 -0.82 -8.55 16 26 C 0.02 0.21 9.81 113.37 1.11 1.32 16 27 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 31 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 32 H 0.15 3.57 6.29 -2.91 -0.02 3.55 16 33 H 0.12 4.72 6.22 -2.91 -0.02 4.70 16 34 H 0.42 8.96 8.84 -92.71 -0.82 8.14 16 35 H 0.40 13.44 8.56 -92.71 -0.79 12.64 16 36 H 0.04 1.90 8.14 -2.38 -0.02 1.89 16 37 H 0.07 3.78 6.06 -2.39 -0.01 3.77 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 40 H 0.17 2.90 6.30 -2.91 -0.02 2.89 16 41 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 43 H 0.06 0.79 7.67 -2.39 -0.02 0.77 16 Total: -1.00 -72.24 357.75 2.34 -69.90 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.56 Total: 30.75 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.34 Total: 10.11 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -3.79 Total: -105.34 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -1.67 Total: -48.84 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -72.24 2.34 -69.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153937274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.177 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds