Wall clock time and date at job start Tue Mar 31 2020 10:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46971 * 2 1 4 4 C 1.46903 * 110.99828 * 283.25428 * 3 2 1 5 5 C 1.50708 * 109.47128 * 76.98625 * 4 3 2 6 6 H 1.08001 * 119.99435 * 4.68727 * 5 4 3 7 7 C 1.37876 * 119.99831 * 184.95796 * 5 4 3 8 8 N 1.31506 * 120.00286 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99738 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47214 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47010 * 119.99794 * 9 7 5 12 12 H 1.48495 * 109.47111 * 240.00044 * 9 7 5 13 13 C 1.46895 * 111.00070 * 159.30248 * 3 2 1 14 14 H 1.09002 * 109.40083 * 169.47929 * 13 3 2 15 15 C 1.53069 * 109.40014 * 289.30128 * 13 3 2 16 16 C 1.53344 * 108.42604 * 169.02777 * 15 13 3 17 17 C 1.52919 * 108.67632 * 292.47666 * 16 15 13 18 18 N 1.45757 * 110.49111 * 50.74616 * 17 16 15 19 19 C 1.46502 * 117.94644 * 160.92878 * 18 17 16 20 20 C 1.53000 * 109.47088 * 90.00129 * 19 18 17 21 21 F 1.39896 * 109.47076 * 60.00165 * 20 19 18 22 22 F 1.39902 * 109.46887 * 180.02562 * 20 19 18 23 23 F 1.39900 * 109.47314 * 299.99789 * 20 19 18 24 24 C 1.33231 * 124.06780 * 340.85517 * 18 17 16 25 25 O 1.21284 * 118.15756 * 182.28966 * 24 18 17 26 26 H 1.09003 * 109.46731 * 186.80347 * 1 2 3 27 27 H 1.09001 * 109.47189 * 306.80122 * 1 2 3 28 28 H 1.09000 * 109.47183 * 66.80189 * 1 2 3 29 29 H 1.08994 * 109.47066 * 239.99996 * 2 1 3 30 30 H 1.08999 * 109.46796 * 119.99396 * 2 1 3 31 31 H 1.08998 * 109.47336 * 316.99018 * 4 3 2 32 32 H 1.09001 * 109.47448 * 196.98325 * 4 3 2 33 33 H 0.97003 * 120.00251 * 180.02562 * 8 7 5 34 34 H 1.08991 * 109.67734 * 288.76282 * 15 13 3 35 35 H 1.09000 * 109.67521 * 49.26375 * 15 13 3 36 36 H 1.09009 * 109.60047 * 52.22695 * 16 15 13 37 37 H 1.08995 * 109.60942 * 172.71313 * 16 15 13 38 38 H 1.08999 * 109.30662 * 171.06612 * 17 16 15 39 39 H 1.09005 * 109.29541 * 290.43533 * 17 16 15 40 40 H 1.08996 * 109.46890 * 210.00606 * 19 18 17 41 41 H 1.09004 * 109.46811 * 330.00329 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8987 1.9861 -1.3349 5 6 0.4625 2.3680 -1.5856 6 1 -0.2716 2.2527 -0.8018 7 6 0.0847 2.8591 -2.8173 8 7 0.9776 2.9948 -3.7732 9 14 -1.6953 3.3330 -3.1278 10 1 -2.4941 3.0884 -1.9001 11 1 -1.7690 4.7720 -3.4871 12 1 -2.2378 2.5160 -4.2428 13 6 3.4046 1.4538 0.4847 14 1 3.8036 2.4513 0.3005 15 6 3.4323 1.1647 1.9876 16 6 4.8914 0.9690 2.4168 17 6 5.4201 -0.3178 1.7820 18 7 5.1517 -0.3278 0.3494 19 6 5.9331 -1.2402 -0.4892 20 6 5.2118 -2.5860 -0.5879 21 9 3.9478 -2.3969 -1.1567 22 9 5.9583 -3.4575 -1.3882 23 9 5.0703 -3.1342 0.6914 24 6 4.2392 0.4403 -0.2443 25 8 4.0752 0.3144 -1.4394 26 1 -0.3633 -1.0205 0.1217 27 1 -0.3633 0.6156 0.8229 28 1 -0.3633 0.4048 -0.9446 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.2200 1.2666 -2.0879 32 1 2.5262 2.8756 -1.3912 33 1 0.7118 3.3407 -4.6397 34 1 2.9995 2.0046 2.5309 35 1 2.8629 0.2593 2.1977 36 1 5.4888 1.8158 2.0785 37 1 4.9459 0.8905 3.5025 38 1 6.4953 -0.3860 1.9476 39 1 4.9323 -1.1751 2.2459 40 1 6.0434 -0.8131 -1.4858 41 1 6.9180 -1.3875 -0.0459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154255752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:11 Heat of formation + Delta-G solvation = -175.391879 kcal Electronic energy + Delta-G solvation = -28090.792610 eV Core-core repulsion = 23784.066243 eV Total energy + Delta-G solvation = -4306.726367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.03195 -47.61541 -47.43524 -40.71183 -36.88327 -36.38096 -33.66044 -32.27942 -30.19541 -29.09428 -28.53416 -26.28511 -24.09845 -23.24691 -22.53129 -21.88898 -20.32098 -18.78967 -18.49813 -18.32981 -17.47692 -16.54222 -16.39948 -16.02865 -15.45975 -14.81209 -14.50220 -14.44523 -14.26575 -14.11056 -13.96006 -13.92659 -13.66543 -13.64549 -13.60140 -13.33274 -12.69833 -12.47472 -12.16115 -12.08387 -11.96591 -11.47823 -11.25359 -11.23176 -11.13626 -10.92207 -10.76257 -10.47872 -10.34599 -10.12925 -9.66401 -9.36232 -9.04767 -8.93246 -8.29534 -7.26202 -5.89693 -3.89243 2.51529 2.75724 3.03439 3.36815 3.44220 3.48359 3.82010 3.99177 4.24969 4.44721 4.60419 4.63171 4.71988 4.87616 4.96584 5.07492 5.25146 5.33758 5.43620 5.48476 5.53076 5.76354 5.79131 5.91596 6.07070 6.18953 6.28729 6.33175 6.43283 6.60285 6.94706 7.16944 7.34492 7.42859 7.69315 7.90276 8.10820 8.23597 8.37189 8.62834 9.17917 9.71254 11.20379 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.004824 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.961731 B = 5803.127658 C = 6372.601609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 N -0.505 5.505 4 C 0.187 3.813 5 C -0.502 4.502 6 H 0.070 0.930 7 C 0.053 3.947 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.078 3.922 14 H 0.108 0.892 15 C -0.116 4.116 16 C -0.133 4.133 17 C 0.111 3.889 18 N -0.608 5.608 19 C 0.068 3.932 20 C 0.432 3.568 21 F -0.167 7.167 22 F -0.187 7.187 23 F -0.188 7.188 24 C 0.484 3.516 25 O -0.509 6.509 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.258 0.742 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.538 -8.687 13.246 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 N -0.228 5.228 4 C 0.063 3.937 5 C -0.541 4.541 6 H 0.088 0.912 7 C -0.148 4.148 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.035 4.035 14 H 0.126 0.874 15 C -0.154 4.154 16 C -0.171 4.171 17 C -0.011 4.011 18 N -0.345 5.345 19 C -0.059 4.059 20 C 0.376 3.624 21 F -0.149 7.149 22 F -0.168 7.168 23 F -0.170 7.170 24 C 0.271 3.729 25 O -0.381 6.381 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.073 -8.381 12.726 19.441 hybrid contribution -0.399 -0.567 -0.853 1.099 sum 11.674 -8.948 11.873 18.903 Atomic orbital electron populations 1.21965 0.94845 0.98902 1.04660 1.22014 0.96948 0.89283 0.98796 1.62728 1.11707 1.17094 1.31317 1.19984 0.97191 0.94235 0.82323 1.21350 0.94197 1.41187 0.97391 0.91221 1.24991 0.97266 0.96307 0.96225 1.70000 1.33299 1.46437 1.03763 0.86543 0.85328 0.78013 0.78145 1.19650 1.21189 1.21244 1.21955 0.90285 0.97127 0.94126 0.87384 1.21779 0.95297 1.03519 0.94812 1.21878 0.97345 0.96881 1.00989 1.21537 1.00902 0.99373 0.79288 1.47663 1.38784 1.39848 1.08167 1.22564 0.95117 0.86023 1.02203 1.21362 0.79099 0.88430 0.73478 1.93287 1.41766 1.95116 1.84704 1.93169 1.76593 1.72624 1.74437 1.93148 1.96030 1.87839 1.39963 1.22271 0.79301 0.82226 0.89069 1.90819 1.64536 1.67635 1.15136 0.94874 0.92994 0.89216 0.94346 0.93809 0.95461 0.96337 0.93198 0.89788 0.90967 0.90776 0.89568 0.90695 0.91478 0.85368 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.81 37.16 0.33 -2.63 16 2 C 0.06 1.18 4.55 -3.82 -0.02 1.16 16 3 N -0.50 -10.81 4.34 -229.74 -1.00 -11.80 16 4 C 0.19 4.99 4.01 -4.97 -0.02 4.97 16 5 C -0.50 -14.13 7.14 -34.44 -0.25 -14.38 16 6 H 0.07 1.92 6.18 -52.49 -0.32 1.59 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 C 0.08 1.34 2.44 -69.09 -0.17 1.17 16 14 H 0.11 1.88 7.70 -51.93 -0.40 1.48 16 15 C -0.12 -1.44 5.47 -26.52 -0.14 -1.59 16 16 C -0.13 -1.15 6.02 -26.59 -0.16 -1.31 16 17 C 0.11 1.00 6.02 -4.48 -0.03 0.98 16 18 N -0.61 -7.82 2.75 -174.99 -0.48 -8.30 16 19 C 0.07 0.77 5.32 -4.04 -0.02 0.75 16 20 C 0.43 5.76 3.29 37.16 0.12 5.88 16 21 F -0.17 -2.94 15.89 2.25 0.04 -2.90 16 22 F -0.19 -2.40 17.32 2.25 0.04 -2.36 16 23 F -0.19 -2.36 16.30 2.25 0.04 -2.33 16 24 C 0.48 8.40 5.59 -11.93 -0.07 8.33 16 25 O -0.51 -11.18 11.66 5.55 0.06 -11.11 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.09 2.10 5.58 -51.93 -0.29 1.81 16 29 H 0.04 0.90 6.62 -51.93 -0.34 0.56 16 30 H 0.04 0.79 6.06 -51.93 -0.31 0.47 16 31 H 0.03 0.83 6.10 -51.93 -0.32 0.51 16 32 H 0.02 0.53 7.64 -51.93 -0.40 0.13 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.94 6.24 -51.93 -0.32 0.62 16 36 H 0.07 0.63 8.12 -51.92 -0.42 0.21 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 39 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 40 H 0.13 1.63 7.20 -51.93 -0.37 1.26 16 41 H 0.12 0.84 7.86 -51.93 -0.41 0.43 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -33.56 328.17 -6.70 -40.27 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.54 Total: -1.43 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.52 Total: 4.77 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.74 Total: -46.82 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.06 Total: -11.11 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.11 Total: -7.59 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.56 -6.70 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154255752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.123 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds