Wall clock time and date at job start Tue Mar 31 2020 10:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47029 * 2 1 4 4 C 1.35993 * 116.99781 * 179.97438 * 3 2 1 5 5 C 1.38513 * 120.03588 * 0.26042 * 4 3 2 6 6 C 1.38804 * 119.92811 * 180.27075 * 5 4 3 7 7 N 1.40139 * 119.99628 * 179.74025 * 6 5 4 8 8 C 1.34775 * 119.99646 * 146.41599 * 7 6 5 9 9 O 1.21581 * 120.00274 * 354.69456 * 8 7 6 10 10 N 1.34781 * 119.99471 * 174.68689 * 8 7 6 11 11 C 1.46501 * 119.99881 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.46988 * 34.73076 * 11 10 8 13 13 C 1.52999 * 109.47237 * 274.72734 * 11 10 8 14 14 C 1.50696 * 109.47274 * 154.72375 * 11 10 8 15 15 H 1.08004 * 119.99835 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99963 * 180.02562 * 14 11 10 17 17 N 1.31508 * 120.00252 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99784 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.46986 * 60.00248 * 18 16 14 20 20 H 1.48502 * 109.46989 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47011 * 300.00110 * 18 16 14 22 22 C 1.38832 * 120.00932 * 359.47304 * 6 5 4 23 23 C 1.38195 * 120.07168 * 0.24965 * 22 6 5 24 24 C 1.38548 * 120.07261 * 0.02562 * 23 22 6 25 25 O 1.36070 * 120.00658 * 179.97438 * 24 23 22 26 26 C 1.42900 * 116.99812 * 359.97438 * 25 24 23 27 27 H 1.09008 * 109.46946 * 60.00026 * 1 2 3 28 28 H 1.08999 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46940 * 300.00173 * 1 2 3 30 30 H 1.08999 * 109.46940 * 239.99827 * 2 1 3 31 31 H 1.09000 * 109.47130 * 120.00262 * 2 1 3 32 32 H 1.07996 * 120.03421 * 0.02562 * 5 4 3 33 33 H 0.97004 * 120.00171 * 326.42628 * 7 6 5 34 34 H 0.97001 * 120.00253 * 359.72847 * 10 8 7 35 35 H 1.08993 * 109.46871 * 299.99921 * 13 11 10 36 36 H 1.09003 * 109.47292 * 59.99919 * 13 11 10 37 37 H 1.09007 * 109.47048 * 179.97438 * 13 11 10 38 38 H 0.97001 * 120.00248 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.96312 * 180.27512 * 22 6 5 40 40 H 1.08002 * 119.96489 * 180.02562 * 23 22 6 41 41 H 1.09000 * 109.47106 * 180.02562 * 26 25 24 42 42 H 1.08997 * 109.47208 * 300.00386 * 26 25 24 43 43 H 1.09002 * 109.47359 * 60.00507 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.1990 0.4275 -0.0044 6 6 5.5747 0.6119 0.0019 7 7 6.4304 -0.4980 0.0024 8 6 7.6145 -0.4361 -0.6382 9 8 7.8990 0.5456 -1.2966 10 7 8.4834 -1.4626 -0.5487 11 6 9.7709 -1.3952 -1.2445 12 1 10.1325 -0.3669 -1.2408 13 6 9.5956 -1.8692 -2.6886 14 6 10.7681 -2.2806 -0.5427 15 1 10.4723 -2.8382 0.3337 16 6 12.0581 -2.3790 -1.0195 17 7 12.4184 -1.6997 -2.0864 18 14 13.2941 -3.4772 -0.1500 19 1 12.8016 -4.8782 -0.1559 20 1 14.5991 -3.4088 -0.8552 21 1 13.4637 -3.0181 1.2521 22 6 6.1032 1.8957 0.0020 23 6 5.2609 2.9913 0.0011 24 6 3.8872 2.8109 0.0006 25 8 3.0591 3.8906 0.0003 26 6 3.6747 5.1802 0.0010 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.7874 -0.5710 -0.0091 33 1 6.1703 -1.3107 0.4636 34 1 8.2581 -2.2441 -0.0201 35 1 9.2341 -2.8974 -2.6921 36 1 8.8743 -1.2287 -3.1962 37 1 10.5535 -1.8186 -3.2064 38 1 13.3261 -1.7686 -2.4216 39 1 7.1738 2.0383 0.0024 40 1 5.6739 3.9892 0.0008 41 1 2.9038 5.9508 0.0011 42 1 4.2943 5.2866 0.8914 43 1 4.2955 5.2871 -0.8886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156547983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:24 Heat of formation + Delta-G solvation = -76.645084 kcal Electronic energy + Delta-G solvation = -25051.518456 eV Core-core repulsion = 21290.930812 eV Total energy + Delta-G solvation = -3760.587644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71496 -39.53731 -38.53154 -37.00376 -34.87623 -33.88424 -32.40845 -31.92610 -30.04183 -29.33596 -28.30758 -26.76771 -25.26911 -24.06380 -22.88234 -21.63490 -21.05620 -19.85328 -18.62899 -18.28302 -17.58530 -16.55232 -16.34345 -16.11043 -15.72078 -15.51154 -15.02823 -14.78133 -14.42072 -14.29640 -14.06759 -13.39952 -13.37330 -12.98516 -12.79134 -12.65092 -12.40956 -12.29479 -12.10371 -11.79371 -11.40789 -11.33375 -11.14248 -11.05560 -10.97922 -10.89238 -10.73660 -10.34715 -10.25252 -9.64900 -9.36860 -9.07683 -8.58695 -8.53984 -7.98597 -7.33437 -6.14742 -4.24187 1.31531 1.54089 3.04592 3.17619 3.23906 3.29420 3.30310 3.34806 3.61076 4.02461 4.30273 4.71502 4.72806 4.81917 4.95681 4.98251 5.03216 5.11367 5.14534 5.17928 5.31831 5.36726 5.39709 5.47268 5.57025 5.57306 5.79717 5.87737 6.39907 6.41916 6.54776 6.78623 6.95882 7.02127 7.04495 7.10999 7.22826 7.43443 7.59420 7.60831 7.81276 7.97442 8.12944 8.70106 8.82468 9.21411 9.44269 10.91289 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002759 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.287941 B =10146.041940 C =10947.866966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.305 6.305 4 C 0.119 3.881 5 C -0.209 4.209 6 C 0.188 3.812 7 N -0.695 5.695 8 C 0.692 3.308 9 O -0.580 6.580 10 N -0.719 5.719 11 C 0.281 3.719 12 H 0.050 0.950 13 C -0.148 4.148 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.117 4.117 23 C -0.149 4.149 24 C 0.070 3.930 25 O -0.311 6.311 26 C 0.027 3.973 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.135 0.865 33 H 0.402 0.598 34 H 0.386 0.614 35 H 0.026 0.974 36 H 0.015 0.985 37 H 0.091 0.909 38 H 0.265 0.735 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.166 5.222 5.907 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.219 6.219 4 C 0.073 3.927 5 C -0.231 4.231 6 C 0.091 3.909 7 N -0.343 5.343 8 C 0.393 3.607 9 O -0.458 6.458 10 N -0.370 5.370 11 C 0.179 3.821 12 H 0.068 0.932 13 C -0.207 4.207 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.138 4.138 23 C -0.168 4.168 24 C 0.024 3.976 25 O -0.225 6.225 26 C -0.068 4.068 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.236 0.764 34 H 0.218 0.782 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.954 6.240 5.139 21.529 hybrid contribution 0.844 -1.559 0.830 1.958 sum -19.110 4.681 5.969 20.560 Atomic orbital electron populations 1.21753 0.92886 1.02626 1.03478 1.22766 0.95780 0.82419 1.01331 1.86157 1.18109 1.28521 1.89159 1.17762 0.82607 0.90609 1.01697 1.20656 0.92096 0.97965 1.12405 1.17135 0.87980 0.87123 0.98634 1.42854 1.18748 1.15494 1.57217 1.16155 0.79792 0.84698 0.80080 1.90889 1.76719 1.32873 1.45283 1.45876 1.19273 1.18308 1.53525 1.18680 0.76473 0.98431 0.88504 0.93239 1.22110 1.01930 0.97501 0.99185 1.21168 0.95337 1.28030 1.12837 0.92120 1.24879 0.98119 0.95712 0.94950 1.69890 1.19070 1.40697 1.22358 0.86491 0.80174 0.80708 0.79607 1.20171 1.21099 1.20169 1.21019 1.01404 0.90035 1.01303 1.20943 0.90732 1.00050 1.05078 1.18125 0.88887 0.85174 1.05397 1.86134 1.33766 1.12871 1.89708 1.23013 0.99641 0.82879 1.01269 0.91560 0.90532 0.91593 0.92094 0.92168 0.84747 0.76368 0.78171 0.95513 0.96578 0.89085 0.92455 0.83774 0.84636 0.88590 0.92869 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.48 5.46 37.16 0.20 0.69 16 3 O -0.31 -4.01 9.92 -34.32 -0.34 -4.35 16 4 C 0.12 1.68 6.70 -39.14 -0.26 1.42 16 5 C -0.21 -2.79 8.95 -39.27 -0.35 -3.14 16 6 C 0.19 2.91 6.28 -83.63 -0.53 2.38 16 7 N -0.69 -10.70 5.35 -14.20 -0.08 -10.77 16 8 C 0.69 13.93 8.27 -86.92 -0.72 13.21 16 9 O -0.58 -13.91 13.68 5.29 0.07 -13.84 16 10 N -0.72 -14.72 5.07 -59.81 -0.30 -15.02 16 11 C 0.28 7.08 2.56 -69.08 -0.18 6.90 16 12 H 0.05 1.44 7.57 -51.93 -0.39 1.05 16 13 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 14 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -24.67 11.32 55.43 0.63 -24.04 16 18 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 22 C -0.12 -1.90 8.65 -39.38 -0.34 -2.24 16 23 C -0.15 -2.09 9.03 -39.48 -0.36 -2.44 16 24 C 0.07 1.00 6.70 -39.13 -0.26 0.74 16 25 O -0.31 -4.17 10.28 -34.57 -0.36 -4.52 16 26 C 0.03 0.25 9.81 101.05 0.99 1.24 16 27 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 31 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 32 H 0.13 1.43 6.29 -52.49 -0.33 1.10 16 33 H 0.40 4.69 8.84 -40.82 -0.36 4.33 16 34 H 0.39 6.69 8.56 -40.82 -0.35 6.35 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 2.45 6.07 -51.92 -0.32 2.13 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.14 2.64 6.40 -52.48 -0.34 2.30 16 40 H 0.14 1.57 6.29 -52.49 -0.33 1.24 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 43 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -32.59 358.05 -7.55 -40.14 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.08 Total: 9.51 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.47 Total: 2.12 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.25 Total: -49.83 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.62 Total: -22.72 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.59 -7.55 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156547983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.505 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds