Wall clock time and date at job start Tue Mar 31 2020 09:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46904 * 109.47015 * 119.99841 * 2 1 3 13 13 C 1.46892 * 111.00175 * 58.95371 * 12 2 1 14 14 C 1.46904 * 110.99976 * 294.99842 * 12 2 1 15 15 C 1.52996 * 109.47057 * 189.99688 * 14 12 2 16 16 C 1.53002 * 109.46903 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.46927 * 180.02562 * 16 15 14 18 18 C 1.35900 * 116.99623 * 179.97438 * 17 16 15 19 19 C 1.38728 * 120.05850 * 359.72549 * 18 17 16 20 20 C 1.38146 * 119.94313 * 179.76611 * 19 18 17 21 21 C 1.38262 * 120.05852 * 0.51466 * 20 19 18 22 22 N 1.48006 * 119.94997 * 179.72319 * 21 20 19 23 23 O 1.21798 * 120.00436 * 180.02562 * 22 21 20 24 24 O 1.21801 * 119.99643 * 0.02562 * 22 21 20 25 25 C 1.38271 * 120.10859 * 359.73772 * 21 20 19 26 26 C 1.38143 * 120.05275 * 0.02562 * 25 21 20 27 27 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 28 28 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 29 29 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46847 * 59.99941 * 13 12 2 32 32 H 1.08994 * 109.47472 * 179.97438 * 13 12 2 33 33 H 1.09001 * 109.47178 * 300.00161 * 13 12 2 34 34 H 1.08998 * 109.47075 * 310.00200 * 14 12 2 35 35 H 1.09002 * 109.46658 * 69.99973 * 14 12 2 36 36 H 1.08998 * 109.47596 * 300.00193 * 15 14 12 37 37 H 1.09002 * 109.47154 * 60.00588 * 15 14 12 38 38 H 1.08995 * 109.47372 * 300.00024 * 16 15 14 39 39 H 1.09001 * 109.47189 * 60.00692 * 16 15 14 40 40 H 1.08002 * 120.03098 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.97197 * 180.22955 * 20 19 18 42 42 H 1.08002 * 119.97365 * 180.02562 * 25 21 20 43 43 H 1.08000 * 120.02503 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0392 2.4181 15 6 2.3788 -0.5662 3.6186 16 6 1.9919 0.1956 4.8879 17 8 2.6743 -0.3695 6.0092 18 6 2.4401 0.1956 7.2227 19 6 1.5759 1.2753 7.3313 20 6 1.3358 1.8449 8.5668 21 6 1.9642 1.3465 9.6930 22 7 1.7100 1.9624 11.0146 23 8 2.2633 1.5244 12.0073 24 8 0.9473 2.9073 11.1094 25 6 2.8300 0.2737 9.5867 26 6 3.0696 -0.3025 8.3542 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9028 -0.5285 -4.4375 31 1 1.8763 -2.6150 0.3648 32 1 1.9060 -2.5657 2.1436 33 1 0.4385 -2.0742 1.2640 34 1 1.9297 1.0871 2.3125 35 1 0.5722 -0.0344 2.5726 36 1 2.0977 -1.6140 3.7243 37 1 3.4553 -0.4925 3.4642 38 1 2.2726 1.2435 4.7826 39 1 0.9154 0.1215 5.0423 40 1 1.0879 1.6677 6.4513 41 1 0.6602 2.6831 8.6524 42 1 3.3194 -0.1142 10.4679 43 1 3.7463 -1.1401 8.2716 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161747634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:34 Heat of formation + Delta-G solvation = -3.395263 kcal Electronic energy + Delta-G solvation = -24260.387495 eV Core-core repulsion = 20502.976202 eV Total energy + Delta-G solvation = -3757.411293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.44331 -40.84466 -38.41520 -37.68902 -36.82260 -33.76856 -32.31258 -31.91135 -31.28442 -29.50786 -27.02302 -26.18607 -25.32933 -24.70748 -23.38181 -22.42607 -21.18975 -19.72049 -19.44716 -18.91954 -18.62000 -17.79024 -16.77219 -16.75624 -16.54108 -15.57309 -15.27155 -14.85174 -14.84261 -14.40983 -14.22403 -13.78250 -13.66708 -13.31409 -13.18272 -12.49215 -12.37679 -12.27384 -11.99302 -11.83012 -11.60158 -11.53263 -11.48201 -11.41142 -11.37634 -11.16760 -10.87358 -10.67226 -10.29493 -10.09705 -10.00960 -9.60233 -9.24975 -9.13788 -8.67097 -7.50142 -6.14615 -4.13437 -0.46034 0.39909 1.01841 1.12617 2.45263 2.78091 3.17927 3.27350 3.31305 3.84495 3.94919 4.14620 4.31188 4.35921 4.49299 4.59879 4.66699 4.80122 4.99184 5.05291 5.11440 5.17035 5.25775 5.27871 5.40291 5.44099 5.65194 5.69898 5.92911 6.01173 6.06028 6.09277 6.15687 6.20597 6.22489 6.43455 6.59796 6.65127 6.80190 7.09049 7.36680 7.50856 7.79928 7.94093 8.55663 8.92341 9.46770 10.98284 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.034700 B = 0.002051 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.713191 B =13648.465068 C =14223.196353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.181 3.819 3 H 0.040 0.960 4 C -0.505 4.505 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.269 1.269 11 H -0.296 1.296 12 N -0.523 5.523 13 C 0.029 3.971 14 C 0.055 3.945 15 C -0.116 4.116 16 C 0.054 3.946 17 O -0.297 6.297 18 C 0.193 3.807 19 C -0.212 4.212 20 C -0.010 4.010 21 C -0.093 4.093 22 N 0.037 4.963 23 O -0.168 6.168 24 O -0.170 6.170 25 C -0.014 4.014 26 C -0.154 4.154 27 H 0.027 0.973 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.264 0.736 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.019 0.981 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 2.707 23.650 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.074 3.926 3 H 0.058 0.942 4 C -0.543 4.543 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.536 5.536 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.194 1.194 11 H -0.223 1.223 12 N -0.246 5.246 13 C -0.119 4.119 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.021 4.021 17 O -0.208 6.208 18 C 0.145 3.855 19 C -0.232 4.232 20 C -0.029 4.029 21 C -0.177 4.177 22 N 0.554 4.446 23 O -0.383 6.383 24 O -0.384 6.384 25 C -0.033 4.033 26 C -0.174 4.174 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.177 0.823 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.503 2.230 22.701 22.816 hybrid contribution -1.853 1.210 0.022 2.213 sum -2.355 3.441 22.723 23.102 Atomic orbital electron populations 1.22830 1.01735 1.01083 0.98928 1.19794 0.88685 0.95316 0.88831 0.94247 1.20929 1.31723 1.13878 0.87768 0.89924 1.24934 0.95885 0.96606 0.95848 1.69875 1.45551 1.40261 0.97901 0.86880 0.80500 0.83874 0.76990 1.20798 1.19411 1.22342 1.62137 1.59288 1.02142 1.01006 1.22355 0.97072 0.90641 1.01871 1.21932 0.96581 0.98457 0.90444 1.21600 1.03119 1.00255 0.90385 1.23145 0.96418 0.98447 0.84092 1.86180 1.65324 1.55825 1.13495 1.19453 0.90261 0.89518 0.86316 1.21370 1.03774 0.99321 0.98693 1.20833 0.94827 0.97622 0.89593 1.20969 1.10086 1.03269 0.83356 1.43523 0.98598 0.99654 1.02839 1.94531 1.50629 1.65720 1.27396 1.94539 1.32254 1.18859 1.92723 1.20838 0.92537 0.90936 0.99015 1.20485 1.04217 1.03835 0.88816 0.95360 0.93618 0.92462 0.92560 0.90022 0.93363 0.96287 0.91180 0.95280 0.90558 0.89680 0.91061 0.91339 0.82891 0.82688 0.82326 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.81 7.98 37.16 0.30 -3.51 16 2 C 0.18 4.01 1.93 -68.86 -0.13 3.88 16 3 H 0.04 0.91 7.09 -51.93 -0.37 0.54 16 4 C -0.50 -13.48 8.52 -34.44 -0.29 -13.77 16 5 H 0.08 2.41 6.99 -52.49 -0.37 2.05 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 8 Si 0.89 21.12 24.37 -169.99 -4.14 16.97 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.27 -6.08 6.53 56.52 0.37 -5.71 16 11 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 12 N -0.52 -9.77 4.74 -236.29 -1.12 -10.89 16 13 C 0.03 0.50 8.70 60.06 0.52 1.02 16 14 C 0.05 0.77 4.40 -3.82 -0.02 0.75 16 15 C -0.12 -1.29 5.51 -26.73 -0.15 -1.44 16 16 C 0.05 0.45 4.74 37.16 0.18 0.63 16 17 O -0.30 -2.70 10.14 -19.43 -0.20 -2.90 16 18 C 0.19 1.52 6.69 -39.22 -0.26 1.26 16 19 C -0.21 -1.47 9.04 -39.43 -0.36 -1.83 16 20 C -0.01 -0.07 9.55 -39.61 -0.38 -0.45 16 21 C -0.09 -0.82 6.85 -79.93 -0.55 -1.37 16 22 N 0.04 0.41 4.45 33.97 0.15 0.57 16 23 O -0.17 -1.99 18.44 -29.46 -0.54 -2.53 16 24 O -0.17 -2.04 18.44 -29.46 -0.54 -2.59 16 25 C -0.01 -0.10 9.55 -39.60 -0.38 -0.48 16 26 C -0.15 -1.05 9.99 -39.43 -0.39 -1.45 16 27 H 0.03 0.49 6.75 -51.93 -0.35 0.13 16 28 H 0.05 0.99 3.27 -51.93 -0.17 0.82 16 29 H 0.06 1.15 6.38 -51.93 -0.33 0.82 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.08 1.63 6.53 -51.93 -0.34 1.29 16 32 H 0.05 0.70 6.30 -51.93 -0.33 0.37 16 33 H 0.02 0.32 6.28 -51.93 -0.33 -0.01 16 34 H 0.07 0.96 8.00 -51.93 -0.42 0.55 16 35 H 0.03 0.39 6.94 -51.93 -0.36 0.03 16 36 H 0.08 0.87 6.47 -51.93 -0.34 0.53 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.52 7.65 -51.93 -0.40 0.12 16 39 H 0.07 0.49 7.68 -51.93 -0.40 0.09 16 40 H 0.15 0.80 6.30 -52.49 -0.33 0.47 16 41 H 0.16 0.96 7.61 -52.49 -0.40 0.56 16 42 H 0.16 0.87 7.61 -52.49 -0.40 0.48 16 43 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -30.59 346.30 -8.06 -38.64 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.64 Total: -1.74 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.01 Total: -14.93 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.20 Total: -36.15 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -1.28 Total: -8.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.14 Total: 16.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.59 -8.06 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161747634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.250 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds