Wall clock time and date at job start Tue Mar 31 2020 10:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47139 * 2 1 4 4 C 1.42901 * 114.00251 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46912 * 330.00502 * 4 3 2 6 6 C 1.52998 * 109.46603 * 89.99856 * 4 3 2 7 7 C 1.50698 * 109.47329 * 209.99682 * 4 3 2 8 8 O 1.21282 * 120.00218 * 355.00653 * 7 4 3 9 9 N 1.34779 * 119.99614 * 174.99861 * 7 4 3 10 10 C 1.39582 * 119.99721 * 180.02562 * 9 7 4 11 11 N 1.32274 * 119.72874 * 0.02562 * 10 9 7 12 12 C 1.31952 * 121.69518 * 179.97438 * 11 10 9 13 13 C 1.38091 * 120.95050 * 359.97438 * 12 11 10 14 14 C 1.38778 * 119.35545 * 0.28060 * 13 12 11 15 15 C 1.38801 * 118.44438 * 359.47538 * 14 13 12 16 16 O 1.35979 * 120.49270 * 180.26740 * 15 14 13 17 17 C 1.42895 * 117.00458 * 0.25597 * 16 15 14 18 18 C 1.52997 * 109.47549 * 180.02562 * 17 16 15 19 19 C 1.50692 * 109.47225 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00474 * 0.02562 * 19 18 17 21 21 C 1.37886 * 119.99805 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99947 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99777 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47029 * 60.00053 * 23 21 19 25 25 H 1.48496 * 109.46703 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46833 * 300.00034 * 23 21 19 27 27 H 1.09005 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47246 * 300.00656 * 1 2 3 29 29 H 1.09004 * 109.47150 * 60.00353 * 1 2 3 30 30 H 1.08993 * 109.47510 * 239.99619 * 2 1 3 31 31 H 1.09000 * 109.46675 * 119.99515 * 2 1 3 32 32 H 1.08996 * 109.47403 * 300.00249 * 6 4 3 33 33 H 1.08995 * 109.47536 * 60.00565 * 6 4 3 34 34 H 1.09005 * 109.47083 * 180.02562 * 6 4 3 35 35 H 0.97002 * 120.00147 * 0.02562 * 9 7 4 36 36 H 1.07999 * 119.52217 * 179.97438 * 12 11 10 37 37 H 1.08002 * 120.31819 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.77350 * 179.72907 * 14 13 12 39 39 H 1.09000 * 109.46896 * 300.00413 * 17 16 15 40 40 H 1.08997 * 109.46720 * 59.99627 * 17 16 15 41 41 H 1.09001 * 109.46778 * 300.00346 * 18 17 16 42 42 H 1.09006 * 109.46958 * 59.99937 * 18 17 16 43 43 H 0.97005 * 119.99620 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8632 0.6016 0.5147 6 6 3.9398 1.5002 -1.4417 7 6 3.8342 2.7265 0.7109 8 8 2.9856 3.5050 1.0915 9 7 5.1380 2.9940 0.9233 10 6 5.5116 4.1667 1.5817 11 7 4.5815 5.0115 1.9953 12 6 4.8908 6.1308 2.6218 13 6 6.2074 6.4644 2.8716 14 6 7.2172 5.6104 2.4510 15 6 6.8623 4.4376 1.7990 16 8 7.8176 3.5682 1.3739 17 6 9.1776 3.9199 1.6357 18 6 10.1008 2.8298 1.0878 19 6 11.5351 3.2010 1.3633 20 1 11.7652 4.1220 1.8781 21 6 12.5537 2.3641 0.9591 22 7 12.2734 1.2422 0.3326 23 14 14.3316 2.8239 1.3013 24 1 14.5356 2.9557 2.7663 25 1 15.2276 1.7659 0.7694 26 1 14.6448 4.1159 0.6396 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.6481 0.5842 -1.9555 33 1 3.5076 2.3586 -1.9559 34 1 5.0265 1.5858 -1.4414 35 1 5.8167 2.3715 0.6187 36 1 4.1030 6.7956 2.9439 37 1 6.4490 7.3834 3.3849 38 1 8.2547 5.8509 2.6304 39 1 9.4076 4.8682 1.1501 40 1 9.3273 4.0167 2.7110 41 1 9.8709 1.8812 1.5731 42 1 9.9510 2.7334 0.0124 43 1 12.9900 0.6537 0.0479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171058112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:35 Heat of formation + Delta-G solvation = -81.915864 kcal Electronic energy + Delta-G solvation = -24893.310239 eV Core-core repulsion = 21132.494037 eV Total energy + Delta-G solvation = -3760.816202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92959 -39.60487 -38.03763 -37.58077 -34.81034 -33.49468 -32.73052 -31.60437 -30.75065 -30.17491 -28.94253 -25.48325 -25.03414 -23.44572 -22.94597 -22.59854 -21.05327 -20.20188 -18.52809 -17.64715 -17.37151 -16.74840 -16.19168 -15.97917 -15.93036 -15.69745 -15.03818 -14.82794 -14.58543 -14.48409 -13.95422 -13.78150 -13.42287 -13.19289 -12.88286 -12.71373 -12.43235 -12.41635 -12.19739 -12.03288 -11.94411 -11.61989 -11.29795 -11.09417 -10.99278 -10.70854 -10.70587 -10.22011 -10.06364 -9.87458 -9.76022 -9.43852 -9.22663 -8.96680 -8.53783 -7.67614 -6.19778 -4.24740 1.19933 1.44322 2.57300 2.68631 3.22571 3.27278 3.28305 3.51241 3.60537 4.00063 4.31917 4.33376 4.63811 4.72215 4.76453 4.86590 4.94561 4.98712 5.08542 5.10560 5.17136 5.25112 5.27721 5.46024 5.47616 5.51478 5.65550 5.84459 5.88074 5.88278 5.90341 6.04906 6.17549 6.33573 6.52116 6.60088 6.86826 7.24894 7.32646 7.50435 7.62235 7.83482 8.06679 8.12547 8.34596 8.80230 9.40233 10.91602 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003030 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.889806 B = 9237.794946 C =11034.942572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.074 3.926 5 H 0.089 0.911 6 C -0.173 4.173 7 C 0.504 3.496 8 O -0.459 6.459 9 N -0.650 5.650 10 C 0.330 3.670 11 N -0.444 5.444 12 C 0.076 3.924 13 C -0.160 4.160 14 C -0.148 4.148 15 C 0.068 3.932 16 O -0.316 6.316 17 C 0.066 3.934 18 C 0.027 3.973 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.424 0.576 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 0.789 0.209 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.276 6.276 4 C 0.013 3.987 5 H 0.107 0.893 6 C -0.230 4.230 7 C 0.288 3.712 8 O -0.326 6.326 9 N -0.300 5.300 10 C 0.097 3.903 11 N -0.160 5.160 12 C -0.081 4.081 13 C -0.181 4.181 14 C -0.174 4.174 15 C 0.016 3.984 16 O -0.229 6.229 17 C -0.008 4.008 18 C -0.010 4.010 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.261 0.739 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.746 0.889 0.101 18.768 hybrid contribution 2.679 0.026 0.283 2.694 sum -16.068 0.915 0.383 16.098 Atomic orbital electron populations 1.21727 0.93436 1.02175 1.03414 1.22604 0.95931 0.83487 1.00246 1.88043 1.18227 1.26397 1.94953 1.21838 0.83863 0.96146 0.96890 0.89299 1.22260 1.02158 1.03870 0.94737 1.20540 0.82141 0.88171 0.80351 1.90804 1.49070 1.47006 1.45720 1.43387 1.08762 1.20910 1.56942 1.17773 0.86008 0.89240 0.97284 1.67622 1.33892 1.03319 1.11119 1.22421 0.95346 0.93355 0.96972 1.21900 0.93328 1.00820 1.02039 1.21612 1.01365 0.93895 1.00552 1.19578 0.88668 0.91898 0.98244 1.86092 1.16982 1.44554 1.75251 1.23397 0.76007 1.01471 0.99925 1.19118 0.91721 0.92783 0.97378 1.20908 0.90179 1.06747 1.38896 0.92385 1.24978 0.99494 0.94811 0.94780 1.69951 1.32993 1.11219 1.38534 0.86544 0.83865 0.78224 0.78743 1.20055 1.21075 1.20055 0.91035 0.91664 0.91753 0.93063 0.93139 0.91001 0.90981 0.90448 0.73856 0.82582 0.84753 0.83705 0.92927 0.92932 0.95364 0.95350 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.48 6.47 37.16 0.24 0.72 16 3 O -0.36 -4.54 9.53 -55.09 -0.52 -5.07 16 4 C 0.07 0.85 3.13 -27.89 -0.09 0.76 16 5 H 0.09 0.80 7.79 -51.93 -0.40 0.40 16 6 C -0.17 -1.64 9.48 37.16 0.35 -1.28 16 7 C 0.50 7.64 7.14 -10.99 -0.08 7.56 16 8 O -0.46 -8.77 14.76 -14.30 -0.21 -8.98 16 9 N -0.65 -9.60 5.35 -11.29 -0.06 -9.66 16 10 C 0.33 5.52 7.45 -154.43 -1.15 4.37 16 11 N -0.44 -7.62 7.87 -12.22 -0.10 -7.71 16 12 C 0.08 1.05 11.17 -17.55 -0.20 0.85 16 13 C -0.16 -2.00 10.10 -39.44 -0.40 -2.40 16 14 C -0.15 -2.14 9.14 -39.17 -0.36 -2.50 16 15 C 0.07 1.12 6.72 -38.92 -0.26 0.86 16 16 O -0.32 -5.73 9.38 -19.67 -0.18 -5.91 16 17 C 0.07 1.28 4.70 37.16 0.17 1.45 16 18 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 19 C -0.53 -13.99 9.11 -34.44 -0.31 -14.30 16 20 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 23 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 31 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 35 H 0.42 5.41 7.83 -40.82 -0.32 5.09 16 36 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.15 1.94 6.44 -52.49 -0.34 1.60 16 39 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 40 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 366.96 15.07 5.53 5.53 Total: -1.00 -33.20 366.96 -8.21 -41.41 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.43 Total: 2.07 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.94 Total: -2.59 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.58 Total: -41.94 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.92 Total: -19.96 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.20 -8.21 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171058112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.506 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds