Wall clock time and date at job start Tue Mar 31 2020 09:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46824 * 2 1 4 4 O 1.42903 * 109.47092 * 240.00665 * 2 1 3 5 5 C 1.53003 * 109.47391 * 120.00210 * 2 1 3 6 6 N 1.46501 * 109.47125 * 185.00215 * 5 2 1 7 7 C 1.46505 * 119.99770 * 270.00297 * 6 5 2 8 8 C 1.34774 * 120.00053 * 90.00109 * 6 5 2 9 9 O 1.21587 * 120.00014 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99873 * 180.02562 * 8 6 5 11 11 C 1.46508 * 119.99798 * 180.02562 * 10 8 6 12 12 C 1.50698 * 109.46930 * 179.97438 * 11 10 8 13 13 C 1.38297 * 119.93202 * 89.99834 * 12 11 10 14 14 C 1.38101 * 120.07230 * 180.02562 * 13 12 11 15 15 C 1.38886 * 119.92536 * 359.97438 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47375 * 119.99795 * 21 19 17 24 24 H 1.48506 * 109.47301 * 239.99793 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38110 * 119.92772 * 359.48927 * 25 15 14 27 27 H 1.08998 * 109.46712 * 299.99328 * 1 2 3 28 28 H 1.09002 * 109.46989 * 60.00043 * 1 2 3 29 29 H 1.08998 * 109.46428 * 179.97438 * 1 2 3 30 30 H 0.96699 * 113.99973 * 299.98983 * 4 2 1 31 31 H 1.09001 * 109.46746 * 65.00350 * 5 2 1 32 32 H 1.08994 * 109.47206 * 305.00455 * 5 2 1 33 33 H 1.08997 * 109.46723 * 269.99856 * 7 6 5 34 34 H 1.08994 * 109.47160 * 29.99877 * 7 6 5 35 35 H 1.09004 * 109.46606 * 150.00090 * 7 6 5 36 36 H 0.96994 * 120.00117 * 359.97438 * 10 8 6 37 37 H 1.09003 * 109.46889 * 59.99529 * 11 10 8 38 38 H 1.09004 * 109.46798 * 299.99686 * 11 10 8 39 39 H 1.07999 * 119.96698 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 179.97438 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07996 * 119.96227 * 180.23396 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 7 3.5001 -0.6178 1.3109 7 6 4.3344 -1.6422 0.6777 8 6 4.0758 0.4197 1.9501 9 8 3.3834 1.2701 2.4751 10 7 5.4190 0.5151 2.0064 11 6 6.0447 1.6427 2.7017 12 6 7.5440 1.5138 2.6198 13 6 8.2289 2.0844 1.5625 14 6 9.6028 1.9676 1.4844 15 6 10.2966 1.2766 2.4693 16 8 11.6471 1.1605 2.3956 17 6 12.2662 1.8345 1.4055 18 1 11.6837 2.3658 0.6675 19 6 13.6510 1.8453 1.3348 20 7 14.3607 1.1984 2.2340 21 14 14.5088 2.7796 -0.0365 22 1 13.4929 3.4184 -0.9112 23 1 15.3855 3.8250 0.5498 24 1 15.3302 1.8378 -0.8388 25 6 9.6053 0.7002 3.5270 26 6 8.2319 0.8247 3.6020 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.7211 -1.5951 -1.2330 31 1 1.7518 -1.7716 1.2054 32 1 1.6055 -0.2619 2.1369 33 1 4.5426 -2.4358 1.3953 34 1 3.8091 -2.0583 -0.1819 35 1 5.2723 -1.1946 0.3487 36 1 5.9714 -0.1631 1.5872 37 1 5.7367 1.6409 3.7473 38 1 5.7338 2.5763 2.2328 39 1 7.6889 2.6220 0.7972 40 1 10.1370 2.4131 0.6583 41 1 15.3293 1.2056 2.1843 42 1 10.1416 0.1585 4.2920 43 1 7.6942 0.3799 4.4262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179627587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:02 Heat of formation + Delta-G solvation = -79.815894 kcal Electronic energy + Delta-G solvation = -24620.227194 eV Core-core repulsion = 20859.502053 eV Total energy + Delta-G solvation = -3760.725141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.31980 -39.13005 -37.99505 -36.85609 -35.20330 -34.41724 -32.38312 -31.71460 -30.28101 -29.82015 -27.67009 -26.43044 -25.50806 -24.27983 -22.17827 -22.04845 -20.64538 -20.05314 -18.33786 -18.05600 -17.06417 -16.93311 -16.44274 -15.80040 -15.65423 -14.94057 -14.70244 -14.45819 -14.31087 -14.22812 -13.80605 -13.64513 -13.44520 -13.31384 -12.86200 -12.79328 -12.74661 -12.62936 -12.32473 -12.07197 -11.87835 -11.68129 -11.39259 -11.27652 -10.97172 -10.76393 -10.71860 -10.66848 -10.47411 -10.10968 -9.42290 -9.04940 -8.91834 -8.54922 -8.28056 -7.32958 -6.53225 -4.11958 2.02549 2.13370 2.71514 3.08102 3.09940 3.15366 3.20765 3.90316 3.98643 4.04603 4.48353 4.53925 4.72312 4.78881 4.93604 5.01127 5.02204 5.16657 5.23385 5.24876 5.36200 5.42908 5.46498 5.51748 5.67898 5.70374 5.77423 5.83063 5.93449 6.12507 6.31023 6.35879 6.58579 6.62915 6.80336 6.83561 6.97857 7.15733 7.28486 7.31478 7.35437 7.71687 7.91726 7.96368 8.60468 8.92342 9.60579 10.64395 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.002371 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.686058 B =11808.318332 C =12273.010244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.084 3.916 3 H 0.103 0.897 4 O -0.559 6.559 5 C 0.104 3.896 6 N -0.630 5.630 7 C 0.082 3.918 8 C 0.702 3.298 9 O -0.598 6.598 10 N -0.736 5.736 11 C 0.196 3.804 12 C -0.214 4.214 13 C -0.050 4.050 14 C -0.237 4.237 15 C 0.161 3.839 16 O -0.174 6.174 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.196 4.196 26 C -0.054 4.054 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.369 0.631 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.271 0.729 42 H 0.118 0.882 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.963 -6.038 -3.983 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.024 3.976 3 H 0.121 0.879 4 O -0.364 6.364 5 C -0.020 4.020 6 N -0.367 5.367 7 C -0.061 4.061 8 C 0.404 3.596 9 O -0.477 6.477 10 N -0.392 5.392 11 C 0.074 3.926 12 C -0.215 4.215 13 C -0.069 4.069 14 C -0.256 4.256 15 C 0.106 3.894 16 O -0.076 6.076 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.215 4.215 26 C -0.072 4.072 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.215 0.785 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -21.735 -4.984 -3.502 22.572 hybrid contribution 0.512 -0.421 -0.820 1.055 sum -21.222 -5.405 -4.323 22.322 Atomic orbital electron populations 1.22430 0.95917 1.02467 1.03217 1.22439 0.92896 0.97687 0.84615 0.87938 1.86666 1.77083 1.28571 1.44038 1.22021 0.79644 1.00712 0.99596 1.46871 1.06181 1.25528 1.58166 1.21729 0.95516 0.91110 0.97788 1.15967 0.82573 0.81795 0.79298 1.90889 1.62478 1.41768 1.52545 1.45649 1.04342 1.29290 1.59954 1.19836 0.88583 0.87828 0.96386 1.19228 0.93420 1.09264 0.99637 1.20653 0.93581 0.96631 0.96009 1.21164 0.94262 1.07865 1.02332 1.19442 0.85103 0.92166 0.92708 1.83977 1.13540 1.61094 1.49021 1.21407 0.89736 1.30484 1.05252 0.88862 1.25326 0.95400 0.97286 0.98509 1.70043 1.06809 1.39101 1.33423 0.85624 0.79377 0.78883 0.79428 1.19034 1.20059 1.20083 1.20212 0.93608 1.07947 0.99733 1.20536 0.93038 0.96551 0.97123 0.91198 0.91586 0.92296 0.78484 0.90498 0.88901 0.92914 0.90559 0.91318 0.76650 0.91740 0.91791 0.87389 0.85413 0.91936 0.86383 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 9.53 37.16 0.35 -0.77 16 2 C 0.08 0.71 3.83 -26.73 -0.10 0.61 16 3 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 4 O -0.56 -4.70 12.17 -35.23 -0.43 -5.13 16 5 C 0.10 0.88 5.07 -4.04 -0.02 0.86 16 6 N -0.63 -6.68 2.84 -187.35 -0.53 -7.22 16 7 C 0.08 0.65 10.02 59.85 0.60 1.25 16 8 C 0.70 9.94 8.28 -86.92 -0.72 9.22 16 9 O -0.60 -10.42 15.92 5.29 0.08 -10.34 16 10 N -0.74 -9.86 5.41 -66.41 -0.36 -10.22 16 11 C 0.20 2.87 5.80 -5.19 -0.03 2.84 16 12 C -0.21 -3.48 5.25 -104.58 -0.55 -4.03 16 13 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 14 C -0.24 -4.93 9.17 -39.39 -0.36 -5.29 16 15 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 16 O -0.17 -4.81 9.76 0.05 0.00 -4.81 16 17 C -0.39 -10.69 9.49 30.89 0.29 -10.39 16 18 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -24.67 13.67 55.48 0.76 -23.92 16 21 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 C -0.20 -3.94 9.99 -39.39 -0.39 -4.33 16 26 C -0.05 -0.91 9.69 -39.60 -0.38 -1.29 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.37 1.57 9.04 45.56 0.41 1.98 16 31 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.09 0.91 7.42 -51.93 -0.39 0.52 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.48 7.11 -51.93 -0.37 0.11 16 35 H 0.07 0.58 6.36 -51.93 -0.33 0.25 16 36 H 0.40 4.80 6.19 -40.82 -0.25 4.55 16 37 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -33.06 362.99 -7.35 -40.42 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.27 Total: 8.83 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.05 Total: -8.15 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.13 Total: -41.35 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.34 Total: -20.28 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.06 -7.35 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179627587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.399 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds