Wall clock time and date at job start Tue Mar 31 2020 09:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99754 * 2 1 4 4 C 1.53005 * 109.46864 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47296 * 65.00062 * 4 3 2 6 6 C 1.35686 * 116.99862 * 180.02562 * 5 4 3 7 7 C 1.38900 * 119.62161 * 180.30094 * 6 5 4 8 8 C 1.39566 * 118.94980 * 180.27042 * 7 6 5 9 9 C 1.48156 * 120.89959 * 179.70994 * 8 7 6 10 10 O 1.21521 * 119.99407 * 19.20879 * 9 8 7 11 11 N 1.34773 * 120.00563 * 199.21612 * 9 8 7 12 12 C 1.46495 * 119.99957 * 7.13512 * 11 9 8 13 13 C 1.46505 * 120.00201 * 187.14151 * 11 9 8 14 14 H 1.09001 * 109.47072 * 359.97438 * 13 11 9 15 15 C 1.52999 * 109.47041 * 239.99699 * 13 11 9 16 16 C 1.50701 * 109.46962 * 119.99446 * 13 11 9 17 17 H 1.07997 * 120.00206 * 0.02562 * 16 13 11 18 18 C 1.37877 * 119.99806 * 179.97438 * 16 13 11 19 19 N 1.31517 * 119.99752 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00252 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47461 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47449 * 300.00620 * 20 18 16 23 23 H 1.48511 * 109.46935 * 60.00227 * 20 18 16 24 24 C 1.39973 * 118.21059 * 359.43749 * 8 7 6 25 25 C 1.37975 * 119.13727 * 0.27524 * 24 8 7 26 26 N 1.31911 * 120.97592 * 0.02562 * 25 24 8 27 27 H 1.08999 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47047 * 299.99701 * 1 2 3 29 29 H 1.08997 * 109.47796 * 59.99823 * 1 2 3 30 30 H 1.08994 * 109.47528 * 60.00744 * 3 2 1 31 31 H 1.08997 * 109.47388 * 299.99985 * 3 2 1 32 32 H 1.09000 * 109.47097 * 304.99796 * 4 3 2 33 33 H 1.09006 * 109.47340 * 185.00095 * 4 3 2 34 34 H 1.08007 * 120.52771 * 359.97438 * 7 6 5 35 35 H 1.08995 * 109.47423 * 264.83457 * 12 11 9 36 36 H 1.08999 * 109.46984 * 24.83304 * 12 11 9 37 37 H 1.08998 * 109.47287 * 144.82975 * 12 11 9 38 38 H 1.09001 * 109.47076 * 299.99860 * 15 13 11 39 39 H 1.09001 * 109.46808 * 60.00001 * 15 13 11 40 40 H 1.08999 * 109.46758 * 179.97438 * 15 13 11 41 41 H 0.97001 * 119.99383 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.43219 * 180.29343 * 24 8 7 43 43 H 1.07999 * 119.51041 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.2998 0.3981 -1.3833 7 6 5.7776 -0.1794 -2.5527 8 6 7.1529 -0.3648 -2.7016 9 6 7.7090 -0.9823 -3.9281 10 8 7.0454 -1.0166 -4.9455 11 7 8.9507 -1.5062 -3.9155 12 6 9.6904 -1.6069 -2.6550 13 6 9.5608 -1.9747 -5.1623 14 1 8.8658 -1.8198 -5.9876 15 6 9.8857 -3.4650 -5.0426 16 6 10.8292 -1.2033 -5.4217 17 1 11.1491 -0.4407 -4.7272 18 6 11.5818 -1.4719 -6.5453 19 7 11.1925 -2.4010 -7.3909 20 14 13.1536 -0.5153 -6.8674 21 1 13.7721 -0.9903 -8.1311 22 1 12.8378 0.9310 -6.9844 23 1 14.1004 -0.7257 -5.7427 24 6 7.9932 0.0538 -1.6633 25 6 7.4366 0.6244 -0.5371 26 7 6.1309 0.7782 -0.4286 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 5.0954 -0.4846 -3.3324 35 1 10.3398 -0.7386 -2.5443 36 1 8.9872 -1.6431 -1.8230 37 1 10.2945 -2.5142 -2.6598 38 1 10.5806 -3.6202 -4.2173 39 1 8.9682 -4.0228 -4.8549 40 1 10.3392 -3.8137 -5.9704 41 1 11.7222 -2.5902 -8.1811 42 1 9.0634 -0.0681 -1.7428 43 1 8.0793 0.9498 0.2674 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180265083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:14 Heat of formation + Delta-G solvation = -52.950467 kcal Electronic energy + Delta-G solvation = -25063.106436 eV Core-core repulsion = 21303.546267 eV Total energy + Delta-G solvation = -3759.560168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80860 -39.28424 -38.29667 -37.32242 -35.54503 -33.34400 -32.22250 -31.51686 -29.92741 -29.09551 -26.74888 -26.50407 -25.28161 -24.67675 -23.20655 -22.83316 -21.11428 -19.36859 -17.99711 -17.23635 -17.09809 -16.51607 -16.18033 -15.93794 -15.64424 -15.58394 -15.30300 -14.90504 -14.57644 -14.47880 -13.88688 -13.59865 -13.35137 -13.07224 -12.77409 -12.66907 -12.49748 -12.07712 -11.86488 -11.72000 -11.57774 -11.21728 -11.08155 -10.98043 -10.77512 -10.73735 -10.31887 -10.19281 -10.06241 -9.85803 -9.73598 -9.23137 -9.08678 -8.47144 -8.45369 -7.69774 -6.10984 -4.19826 0.91314 1.19261 2.84280 3.25713 3.29508 3.31456 3.34603 3.41766 3.79996 3.98694 4.25146 4.36284 4.63131 4.78204 4.82465 4.91338 5.00450 5.04520 5.07109 5.13031 5.19942 5.20980 5.27662 5.37839 5.47204 5.64197 5.74475 5.84780 5.93465 6.17674 6.21964 6.33734 6.73245 6.78186 6.78973 7.00613 7.20842 7.33828 7.44669 7.66099 7.79457 7.96310 8.12311 8.40200 8.73519 8.90835 9.46623 10.94276 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028733 B = 0.002674 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.247181 B =10469.750533 C =10867.646099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.060 3.940 4 C 0.074 3.926 5 O -0.297 6.297 6 C 0.314 3.686 7 C -0.136 4.136 8 C -0.040 4.040 9 C 0.544 3.456 10 O -0.538 6.538 11 N -0.580 5.580 12 C 0.069 3.931 13 C 0.258 3.742 14 H 0.065 0.935 15 C -0.148 4.148 16 C -0.528 4.528 17 H 0.060 0.940 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.901 3.099 21 H -0.286 1.286 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.200 4.200 25 C 0.129 3.871 26 N -0.535 5.535 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.013 0.987 40 H 0.095 0.905 41 H 0.265 0.735 42 H 0.167 0.833 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.884 5.986 17.555 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.016 4.016 4 C -0.001 4.001 5 O -0.204 6.204 6 C 0.136 3.864 7 C -0.157 4.157 8 C -0.051 4.051 9 C 0.330 3.670 10 O -0.417 6.417 11 N -0.310 5.310 12 C -0.074 4.074 13 C 0.158 3.842 14 H 0.083 0.917 15 C -0.206 4.206 16 C -0.567 4.567 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.524 5.524 20 Si 0.728 3.272 21 H -0.211 1.211 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.220 4.220 25 C -0.026 4.026 26 N -0.260 5.260 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.168 0.832 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.184 0.816 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.609 5.990 17.373 22.867 hybrid contribution 1.149 0.516 -0.642 1.414 sum -12.459 6.507 16.731 21.851 Atomic orbital electron populations 1.22759 0.80892 1.03007 0.99906 1.87984 1.19786 1.27181 1.95397 1.22652 0.91915 0.85733 1.01342 1.22623 0.92440 0.98882 0.86184 1.86297 1.17749 1.76613 1.39791 1.19587 0.83949 0.92674 0.90234 1.21122 0.95283 1.02019 0.97318 1.20453 0.93026 0.96584 0.95055 1.18078 0.82324 0.79618 0.86972 1.90744 1.58961 1.58626 1.33369 1.48155 1.13660 1.58614 1.10556 1.22235 0.96694 1.02415 0.86051 1.19035 0.93548 0.91285 0.80290 0.91713 1.22096 0.98009 0.97477 1.03047 1.21246 1.07086 1.20198 1.08170 0.92224 1.24897 0.98025 0.95200 0.95637 1.69871 1.38915 1.31170 1.12464 0.86523 0.82843 0.80241 0.77583 1.21148 1.20228 1.20185 1.23194 1.03428 1.01163 0.94258 1.22350 0.89280 0.94061 0.96943 1.67126 1.05952 1.22194 1.30755 0.89474 0.94146 0.93888 0.91088 0.92109 0.90694 0.90028 0.83174 0.92282 0.91131 0.90892 0.94977 0.96787 0.88644 0.92535 0.81592 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.20 10.67 -40.08 -0.43 -4.63 16 3 C 0.06 0.52 6.32 37.16 0.23 0.76 16 4 C 0.07 0.78 5.69 37.16 0.21 0.99 16 5 O -0.30 -4.20 10.08 -23.61 -0.24 -4.44 16 6 C 0.31 4.72 7.49 -17.16 -0.13 4.59 16 7 C -0.14 -2.24 9.61 -38.84 -0.37 -2.62 16 8 C -0.04 -0.69 5.60 -104.68 -0.59 -1.28 16 9 C 0.54 11.62 7.56 -12.19 -0.09 11.53 16 10 O -0.54 -13.53 15.95 5.35 0.09 -13.45 16 11 N -0.58 -12.27 2.75 -176.26 -0.49 -12.76 16 12 C 0.07 1.11 7.95 59.84 0.48 1.59 16 13 C 0.26 6.52 2.63 -69.08 -0.18 6.34 16 14 H 0.07 1.90 6.92 -51.93 -0.36 1.54 16 15 C -0.15 -3.50 8.94 37.16 0.33 -3.17 16 16 C -0.53 -13.98 8.37 -34.44 -0.29 -14.26 16 17 H 0.06 1.53 7.50 -52.49 -0.39 1.14 16 18 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 20 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.20 -2.73 7.71 -39.03 -0.30 -3.03 16 25 C 0.13 1.53 11.17 -17.61 -0.20 1.34 16 26 N -0.54 -7.30 9.18 -13.38 -0.12 -7.42 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.15 2.54 7.85 -52.48 -0.41 2.13 16 35 H 0.06 0.88 6.98 -51.93 -0.36 0.51 16 36 H 0.07 0.94 5.09 -51.93 -0.26 0.67 16 37 H 0.07 1.17 6.45 -51.93 -0.33 0.84 16 38 H 0.03 0.69 6.69 -51.93 -0.35 0.34 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.17 2.02 4.16 -52.49 -0.22 1.81 16 43 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -32.71 355.29 -6.05 -38.75 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.94 Total: 1.27 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 0.12 Total: 5.77 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.02 Total: -44.32 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.58 Total: -22.51 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.71 -6.05 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180265083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.196 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds