Wall clock time and date at job start Tue Mar 31 2020 09:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42901 * 113.99684 * 2 1 4 4 H 1.08992 * 109.47199 * 29.99824 * 3 2 1 5 5 C 1.52997 * 109.47051 * 269.99433 * 3 2 1 6 6 C 1.53000 * 109.46653 * 149.99906 * 3 2 1 7 7 N 1.46492 * 109.47356 * 299.99661 * 6 3 2 8 8 C 1.34783 * 120.00283 * 180.02562 * 7 6 3 9 9 O 1.21586 * 119.99639 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00010 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99958 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47314 * 179.97438 * 11 10 8 13 13 C 1.38301 * 119.93176 * 269.72246 * 12 11 10 14 14 C 1.38104 * 120.07108 * 179.72097 * 13 12 11 15 15 C 1.38878 * 119.92822 * 0.57395 * 14 13 12 16 16 O 1.35749 * 120.06910 * 179.67606 * 15 14 13 17 17 C 1.34824 * 116.99983 * 174.48697 * 16 15 14 18 18 H 1.08003 * 120.00180 * 5.06112 * 17 16 15 19 19 C 1.38658 * 120.00227 * 185.05959 * 17 16 15 20 20 N 1.31555 * 120.00050 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99881 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47019 * 89.99473 * 21 19 17 23 23 H 1.48493 * 109.46905 * 210.00125 * 21 19 17 24 24 H 1.48503 * 109.46918 * 329.99969 * 21 19 17 25 25 C 1.38881 * 119.86211 * 359.70613 * 15 14 13 26 26 C 1.38105 * 119.93086 * 359.97438 * 25 15 14 27 27 H 1.08996 * 109.46716 * 300.00138 * 1 2 3 28 28 H 1.09004 * 109.46704 * 60.00269 * 1 2 3 29 29 H 1.08998 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47635 * 300.01013 * 5 3 2 31 31 H 1.08997 * 109.47228 * 180.02562 * 5 3 2 32 32 H 1.09005 * 109.46866 * 60.00865 * 5 3 2 33 33 H 1.09002 * 109.47380 * 60.00022 * 6 3 2 34 34 H 1.09006 * 109.46766 * 179.97438 * 6 3 2 35 35 H 0.97002 * 120.00354 * 0.02562 * 7 6 3 36 36 H 0.97000 * 120.00032 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46953 * 299.99816 * 11 10 8 38 38 H 1.09002 * 109.47627 * 59.99378 * 11 10 8 39 39 H 1.08001 * 119.96492 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.03642 * 180.27641 * 14 13 12 41 41 H 0.97002 * 119.99783 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.03455 * 179.97438 * 25 15 14 43 43 H 1.07997 * 119.96270 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.3589 1.2633 0.7213 7 7 3.1603 0.8172 2.1024 8 6 4.2161 0.7040 2.9326 9 8 5.3334 0.9725 2.5351 10 7 4.0334 0.2931 4.2031 11 6 5.1809 0.1706 5.1055 12 6 4.7094 -0.3024 6.4564 13 6 4.3485 0.6189 7.4227 14 6 3.9105 0.1885 8.6598 15 6 3.8440 -1.1707 8.9369 16 8 3.4201 -1.5967 10.1542 17 6 3.2703 -2.9264 10.3192 18 1 3.5624 -3.6047 9.5312 19 6 2.7413 -3.4231 11.5008 20 7 2.5956 -4.7206 11.6620 21 14 2.2355 -2.2499 12.8636 22 1 0.8139 -1.8620 12.6805 23 1 2.4008 -2.9187 14.1791 24 1 3.0900 -1.0363 12.8144 25 6 4.2126 -2.0932 7.9664 26 6 4.6435 -1.6566 6.7290 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 2.8830 1.0774 -1.9564 31 1 2.6615 2.7669 -1.4425 32 1 1.2569 1.8015 -1.9563 33 1 4.0242 0.5694 0.2075 34 1 3.8024 2.2590 0.7209 35 1 2.2689 0.6033 2.4197 36 1 3.1420 0.0792 4.5202 37 1 5.8902 -0.5484 4.6957 38 1 5.6665 1.1409 5.2097 39 1 4.4054 1.6758 7.2084 40 1 3.6246 0.9083 9.4124 41 1 2.2252 -5.0680 12.4885 42 1 4.1624 -3.1508 8.1791 43 1 4.9299 -2.3735 5.9738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190497640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:11 Heat of formation + Delta-G solvation = -81.718835 kcal Electronic energy + Delta-G solvation = -24129.172284 eV Core-core repulsion = 20368.364626 eV Total energy + Delta-G solvation = -3760.807658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.08018 -39.27929 -38.66000 -37.05921 -34.93215 -34.31756 -32.49142 -32.05995 -30.37845 -29.95859 -27.31134 -26.59023 -25.60201 -24.23526 -22.17347 -21.85878 -20.87917 -20.58274 -18.45822 -17.96698 -17.38489 -17.28860 -16.73412 -15.59871 -15.51986 -15.32383 -14.91729 -14.77989 -14.31027 -14.13853 -13.96653 -13.88359 -13.51916 -13.35439 -13.12166 -12.96435 -12.74913 -12.60641 -12.53721 -12.26874 -11.94275 -11.82911 -11.46482 -11.18287 -10.94406 -10.83654 -10.76340 -10.25799 -10.22194 -10.06821 -9.47932 -9.30032 -8.95190 -8.75283 -8.36702 -7.47642 -6.49725 -4.16627 1.93300 2.03801 2.82895 3.16913 3.20435 3.23649 3.32148 3.34741 4.16673 4.20559 4.35164 4.49716 4.59563 4.71336 4.75517 4.90026 4.96682 5.02222 5.15751 5.17900 5.27288 5.30813 5.37844 5.40205 5.56556 5.58333 5.70928 5.76442 5.90591 6.04162 6.26508 6.35605 6.46703 6.59172 6.69054 6.73653 6.85769 6.99620 7.14255 7.20600 7.50822 7.71255 7.94612 8.05197 8.63898 8.84874 9.45780 10.57452 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020922 B = 0.002278 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.953817 B =12288.473070 C =12987.377069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.381 6.381 3 C 0.072 3.928 4 H 0.067 0.933 5 C -0.172 4.172 6 C 0.144 3.856 7 N -0.745 5.745 8 C 0.702 3.298 9 O -0.598 6.598 10 N -0.738 5.738 11 C 0.197 3.803 12 C -0.205 4.205 13 C -0.056 4.056 14 C -0.196 4.196 15 C 0.166 3.834 16 O -0.213 6.213 17 C -0.391 4.391 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.876 5.876 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.224 4.224 26 C -0.051 4.051 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.397 0.603 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.281 0.719 42 H 0.134 0.866 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 12.287 -20.823 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.299 6.299 3 C 0.014 3.986 4 H 0.085 0.915 5 C -0.230 4.230 6 C 0.019 3.981 7 N -0.402 5.402 8 C 0.402 3.598 9 O -0.477 6.477 10 N -0.393 5.393 11 C 0.074 3.926 12 C -0.206 4.206 13 C -0.075 4.075 14 C -0.215 4.215 15 C 0.113 3.887 16 O -0.118 6.118 17 C -0.467 4.467 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.513 5.513 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.243 4.243 26 C -0.070 4.070 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.230 0.770 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.152 0.848 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.963 12.292 -20.814 24.354 hybrid contribution -1.373 0.145 0.894 1.645 sum -4.336 12.437 -19.920 23.881 Atomic orbital electron populations 1.22831 0.80906 1.03064 0.99964 1.88002 1.19722 1.27156 1.95060 1.22419 0.94612 0.85325 0.96232 0.91477 1.22201 1.02828 1.02113 0.95878 1.21286 0.95483 1.00785 0.80566 1.44964 1.09360 1.73856 1.11974 1.15989 0.84451 0.78419 0.80959 1.90906 1.22808 1.57593 1.76415 1.45454 1.11714 1.72019 1.10131 1.19839 0.86586 1.00733 0.85480 1.19305 1.12095 0.93654 0.95561 1.20543 0.96484 0.98196 0.92232 1.20212 1.10040 0.93043 0.98211 1.19185 0.91863 0.92679 0.84948 1.83572 1.74309 1.26854 1.27020 1.20787 1.43167 0.78089 1.04625 0.87494 1.24493 0.95625 0.96045 0.97829 1.69644 1.42836 1.11260 1.27534 0.86170 0.79669 0.81076 0.79935 1.19835 1.20695 1.18324 1.21285 1.07956 1.00791 0.94305 1.20719 0.96094 0.94408 0.95801 0.93869 0.94068 0.89412 0.91245 0.91111 0.91974 0.90853 0.90338 0.76961 0.76896 0.91622 0.91662 0.86764 0.86396 0.90920 0.84801 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.21 10.09 -35.23 -0.36 -3.56 16 3 C 0.07 0.49 2.81 -26.73 -0.08 0.42 16 4 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 5 C -0.17 -0.94 9.53 37.16 0.35 -0.59 16 6 C 0.14 1.31 5.37 -4.05 -0.02 1.29 16 7 N -0.75 -7.71 5.45 -65.23 -0.36 -8.06 16 8 C 0.70 9.66 8.57 -86.91 -0.74 8.92 16 9 O -0.60 -10.51 16.34 5.29 0.09 -10.43 16 10 N -0.74 -9.33 5.55 -66.42 -0.37 -9.70 16 11 C 0.20 2.74 5.80 -5.20 -0.03 2.71 16 12 C -0.20 -3.17 5.25 -104.58 -0.55 -3.72 16 13 C -0.06 -0.88 9.69 -39.61 -0.38 -1.26 16 14 C -0.20 -3.64 9.99 -39.39 -0.39 -4.04 16 15 C 0.17 3.66 6.65 -39.11 -0.26 3.40 16 16 O -0.21 -5.43 8.59 0.07 0.00 -5.43 16 17 C -0.39 -10.70 9.95 30.89 0.31 -10.40 16 18 H 0.11 2.98 5.44 -52.48 -0.29 2.70 16 19 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 20 N -0.88 -24.73 13.96 55.48 0.77 -23.95 16 21 Si 0.91 21.11 28.62 -169.99 -4.86 16.24 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.22 -4.59 9.17 -39.39 -0.36 -4.95 16 26 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 27 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 28 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 3.31 8.36 -40.82 -0.34 2.97 16 36 H 0.40 4.39 8.48 -40.82 -0.35 4.04 16 37 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 41 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -31.71 367.58 -7.36 -39.06 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.27 Total: 6.87 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.54 Total: -6.57 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.05 Total: -41.72 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.27 Total: -19.42 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.86 Total: 16.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.71 -7.36 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190497640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.656 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds