Wall clock time and date at job start Tue Mar 31 2020 10:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47111 * 2 1 4 4 C 1.36074 * 117.00226 * 180.02562 * 3 2 1 5 5 C 1.38552 * 119.99794 * 0.02637 * 4 3 2 6 6 C 1.38197 * 120.06268 * 179.97438 * 5 4 3 7 7 C 1.38834 * 120.07693 * 0.02562 * 6 5 4 8 8 N 1.40137 * 119.99280 * 180.02562 * 7 6 5 9 9 C 1.34776 * 120.00084 * 324.89250 * 8 7 6 10 10 O 1.21585 * 119.99906 * 4.62557 * 9 8 7 11 11 N 1.34782 * 119.99831 * 184.62102 * 9 8 7 12 12 C 1.46497 * 119.99880 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47470 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99367 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00573 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99479 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00136 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47021 * 90.00728 * 17 15 13 19 19 H 1.48501 * 109.47053 * 210.00320 * 17 15 13 20 20 H 1.48498 * 109.47581 * 330.00436 * 17 15 13 21 21 C 1.38797 * 120.00781 * 0.03673 * 7 6 5 22 22 C 1.38508 * 119.93403 * 359.94376 * 21 7 6 23 23 O 1.35994 * 120.04035 * 180.31650 * 22 21 7 24 24 C 1.42894 * 116.99806 * 359.71905 * 23 22 21 25 25 C 1.53002 * 109.47259 * 180.02562 * 24 23 22 26 26 H 1.09001 * 109.46885 * 299.99426 * 1 2 3 27 27 H 1.08997 * 109.47213 * 59.99815 * 1 2 3 28 28 H 1.09000 * 109.46801 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46885 * 240.00574 * 2 1 3 30 30 H 1.09005 * 109.47353 * 120.00814 * 2 1 3 31 31 H 1.07993 * 119.97013 * 359.97438 * 5 4 3 32 32 H 1.08008 * 119.95997 * 180.02562 * 6 5 4 33 33 H 0.96997 * 119.99961 * 144.90620 * 8 7 6 34 34 H 0.97000 * 120.00040 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.46816 * 300.00168 * 12 11 9 36 36 H 1.09005 * 109.47610 * 59.99540 * 12 11 9 37 37 H 0.97005 * 119.99790 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.03773 * 180.02562 * 21 7 6 39 39 H 1.08997 * 109.47096 * 300.00110 * 24 23 22 40 40 H 1.09003 * 109.47163 * 59.99933 * 24 23 22 41 41 H 1.09000 * 109.46924 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.46712 * 300.00413 * 25 24 23 43 43 H 1.08998 * 109.46841 * 59.99953 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3553 1.5256 -0.0005 5 6 4.1993 0.4268 -0.0016 6 6 5.5696 0.6064 -0.0027 7 6 6.1033 1.8880 -0.0022 8 7 7.4931 2.0681 -0.0038 9 6 8.2850 1.2071 0.6656 10 8 7.8025 0.2275 1.2004 11 7 9.6117 1.4319 0.7421 12 6 10.4725 0.4958 1.4692 13 6 11.9007 0.9722 1.4040 14 1 12.1428 1.8817 0.8742 15 6 12.8981 0.2477 2.0215 16 7 12.6031 -0.8595 2.6670 17 14 14.6683 0.8387 1.9412 18 1 14.9448 1.7316 3.0951 19 1 15.5830 -0.3301 1.9894 20 1 14.8843 1.5844 0.6753 21 6 5.2607 2.9909 0.0002 22 6 3.8873 2.8114 0.0009 23 8 3.0596 3.8904 -0.0033 24 6 3.6751 5.1800 -0.0020 25 6 2.5930 6.2617 -0.0065 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 3.7860 -0.5709 -0.0016 32 1 6.2260 -0.2514 -0.0040 33 1 7.8851 2.8125 -0.4866 34 1 9.9966 2.2132 0.3150 35 1 10.1539 0.4429 2.5103 36 1 10.3986 -0.4929 1.0161 37 1 13.3049 -1.3694 3.1011 38 1 5.6754 3.9881 0.0002 39 1 4.2918 5.2874 0.8902 40 1 4.2988 5.2858 -0.8897 41 1 3.0625 7.2453 -0.0060 42 1 1.9759 6.1544 -0.8986 43 1 1.9697 6.1557 0.8813 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000242648890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:48 Heat of formation + Delta-G solvation = -83.458338 kcal Electronic energy + Delta-G solvation = -24671.265054 eV Core-core repulsion = 20910.381966 eV Total energy + Delta-G solvation = -3760.883089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72961 -39.53426 -38.63039 -36.97737 -34.31474 -33.97839 -32.42942 -31.97107 -31.58659 -29.99681 -28.35555 -26.85495 -24.58050 -23.28605 -23.21487 -21.98433 -21.22541 -20.29369 -18.65520 -18.28724 -17.70713 -16.51686 -16.42639 -15.94956 -15.88076 -15.79070 -14.92407 -14.81160 -14.59608 -14.18310 -13.97723 -13.68496 -13.32763 -13.05832 -12.84087 -12.79907 -12.77092 -12.45376 -12.22568 -12.02715 -11.98081 -11.75862 -11.37562 -11.13044 -10.98123 -10.97035 -10.85893 -10.82543 -10.33499 -9.66896 -9.42593 -9.35607 -8.78246 -8.53969 -7.97514 -7.34316 -6.19500 -4.26538 1.30828 1.54123 3.03324 3.14048 3.22402 3.24025 3.29368 3.32184 3.60126 3.97687 4.29228 4.69169 4.72790 4.77945 4.78702 4.90146 4.95264 5.03057 5.08480 5.10599 5.16852 5.28487 5.34727 5.38666 5.52422 5.57289 5.57984 5.61554 5.79625 5.83394 5.88823 6.41078 6.42884 6.56031 6.99423 7.05355 7.07456 7.38183 7.47540 7.49723 7.61615 7.80382 7.96340 8.66304 8.81264 9.17393 9.40714 10.90681 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.002603 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.386066 B =10755.061579 C =12007.205266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.075 3.925 5 C -0.152 4.152 6 C -0.116 4.116 7 C 0.183 3.817 8 N -0.694 5.694 9 C 0.691 3.309 10 O -0.582 6.582 11 N -0.722 5.722 12 C 0.266 3.734 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.207 4.207 22 C 0.117 3.883 23 O -0.305 6.305 24 C 0.052 3.948 25 C -0.150 4.150 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.149 0.851 33 H 0.402 0.598 34 H 0.388 0.612 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.135 0.865 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.908 9.448 -8.032 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.223 6.223 4 C 0.029 3.971 5 C -0.171 4.171 6 C -0.137 4.137 7 C 0.086 3.914 8 N -0.343 5.343 9 C 0.391 3.609 10 O -0.460 6.460 11 N -0.374 5.374 12 C 0.145 3.855 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.732 3.268 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.229 4.229 22 C 0.071 3.929 23 O -0.219 6.219 24 C -0.023 4.023 25 C -0.207 4.207 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.167 0.833 33 H 0.237 0.763 34 H 0.221 0.779 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.153 0.847 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.489 8.506 -7.371 24.258 hybrid contribution 1.812 0.870 -0.338 2.038 sum -19.677 9.376 -7.709 23.120 Atomic orbital electron populations 1.21746 0.93004 1.02564 1.03376 1.22744 0.95665 0.82529 1.01327 1.86132 1.18238 1.28380 1.89590 1.18103 0.82972 0.90984 1.05005 1.20969 0.93448 0.97358 1.05343 1.21169 0.94347 0.97318 1.00820 1.17138 0.82101 0.92905 0.99219 1.42772 1.04162 1.32330 1.54993 1.16148 0.82190 0.82890 0.79655 1.90872 1.73920 1.29328 1.51840 1.45775 1.04507 1.29695 1.57389 1.19051 0.87042 0.87818 0.91574 1.21202 0.91418 1.09981 1.35623 0.91890 1.24944 0.99566 0.94715 0.94779 1.69976 1.33662 1.14924 1.33616 0.86395 0.83569 0.78310 0.78508 1.20452 1.20974 1.19766 1.20681 0.91110 0.98999 1.12099 1.17762 0.88114 0.85099 1.01883 1.86157 1.33909 1.12680 1.89174 1.22765 0.96696 0.81512 1.01330 1.21751 0.98921 0.96595 1.03463 0.91623 0.91679 0.90579 0.92227 0.92124 0.84704 0.83334 0.76306 0.77924 0.95504 0.95485 0.92390 0.84733 0.92092 0.92178 0.90529 0.91614 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.51 5.46 37.16 0.20 0.72 16 3 O -0.31 -4.16 9.92 -34.57 -0.34 -4.50 16 4 C 0.08 1.08 6.70 -39.13 -0.26 0.82 16 5 C -0.15 -2.13 9.03 -39.48 -0.36 -2.49 16 6 C -0.12 -1.88 8.69 -39.38 -0.34 -2.22 16 7 C 0.18 2.82 6.30 -83.63 -0.53 2.29 16 8 N -0.69 -10.66 5.35 -14.20 -0.08 -10.74 16 9 C 0.69 13.98 8.41 -86.91 -0.73 13.25 16 10 O -0.58 -14.00 13.77 5.29 0.07 -13.92 16 11 N -0.72 -14.98 5.55 -66.41 -0.37 -15.35 16 12 C 0.27 6.96 5.43 -5.20 -0.03 6.94 16 13 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.88 -25.83 13.29 55.43 0.74 -25.10 16 17 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C -0.21 -2.75 8.95 -39.28 -0.35 -3.10 16 22 C 0.12 1.65 6.70 -39.14 -0.26 1.39 16 23 O -0.31 -4.01 9.92 -34.32 -0.34 -4.35 16 24 C 0.05 0.48 5.46 37.16 0.20 0.69 16 25 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 31 H 0.14 1.57 6.29 -52.49 -0.33 1.24 16 32 H 0.15 2.71 6.21 -52.48 -0.33 2.38 16 33 H 0.40 4.67 8.84 -40.82 -0.36 4.31 16 34 H 0.39 6.77 8.34 -40.82 -0.34 6.43 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.13 1.43 6.29 -52.49 -0.33 1.10 16 39 H 0.06 0.53 7.67 -51.93 -0.40 0.14 16 40 H 0.06 0.48 7.65 -51.93 -0.40 0.09 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -33.60 362.75 -8.18 -41.78 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.19 Total: 7.47 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -2.11 Total: 3.64 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.29 Total: -51.18 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.61 Total: -22.77 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.60 -8.18 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242648890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.683 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds