Wall clock time and date at job start Tue Mar 31 2020 10:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47071 * 2 1 4 4 C 1.46499 * 120.00025 * 270.00166 * 3 2 1 5 5 C 1.50700 * 109.46757 * 270.00128 * 4 3 2 6 6 H 1.08003 * 119.99998 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00269 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00586 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99564 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47341 * 89.99884 * 9 7 5 11 11 H 1.48506 * 109.46700 * 209.99985 * 9 7 5 12 12 H 1.48500 * 109.47157 * 329.99760 * 9 7 5 13 13 C 1.34778 * 120.00068 * 89.99639 * 3 2 1 14 14 O 1.21590 * 120.00043 * 180.02562 * 13 3 2 15 15 N 1.34772 * 120.00079 * 359.97438 * 13 3 2 16 16 C 1.40136 * 120.00091 * 185.29780 * 15 13 3 17 17 C 1.38837 * 119.99522 * 33.29732 * 16 15 13 18 18 C 1.38197 * 120.07096 * 179.69836 * 17 16 15 19 19 C 1.38543 * 120.07107 * 0.59939 * 18 17 16 20 20 O 1.36073 * 120.00680 * 179.70023 * 19 18 17 21 21 C 1.42894 * 116.99665 * 359.71843 * 20 19 18 22 22 C 1.39149 * 119.99223 * 359.42132 * 19 18 17 23 23 O 1.35991 * 120.04243 * 180.30014 * 22 19 18 24 24 C 1.42896 * 117.00303 * 180.02562 * 23 22 19 25 25 C 1.38515 * 119.92309 * 0.27676 * 22 19 18 26 26 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47327 * 300.00179 * 1 2 3 28 28 H 1.09000 * 109.47217 * 60.00511 * 1 2 3 29 29 H 1.08998 * 109.47327 * 239.99821 * 2 1 3 30 30 H 1.09002 * 109.46485 * 119.99596 * 2 1 3 31 31 H 1.09006 * 109.47001 * 29.99214 * 4 3 2 32 32 H 1.08994 * 109.47371 * 149.99688 * 4 3 2 33 33 H 0.96993 * 120.00439 * 179.97438 * 8 7 5 34 34 H 0.97004 * 119.99885 * 5.30405 * 15 13 3 35 35 H 1.07996 * 119.95923 * 0.02562 * 17 16 15 36 36 H 1.08004 * 119.96293 * 180.32490 * 18 17 16 37 37 H 1.09007 * 109.47214 * 60.00369 * 21 20 19 38 38 H 1.08998 * 109.47289 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47548 * 300.00385 * 21 20 19 40 40 H 1.09002 * 109.47166 * 59.99800 * 24 23 22 41 41 H 1.09001 * 109.46881 * 179.97438 * 24 23 22 42 42 H 1.08998 * 109.47414 * 299.99933 * 24 23 22 43 43 H 1.08002 * 120.03211 * 179.97438 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0957 7 6 4.1492 2.3895 -2.8780 8 7 5.3913 2.1833 -3.2574 9 14 3.0125 3.4339 -3.9299 10 1 3.1147 4.8544 -3.5093 11 1 3.4060 3.3105 -5.3566 12 1 1.6130 2.9670 -3.7603 13 6 2.2429 2.0166 1.1672 14 8 2.6478 3.1631 1.1672 15 7 2.0178 1.3815 2.3344 16 6 2.1441 2.0753 3.5454 17 6 1.8157 3.4227 3.6109 18 6 1.9338 4.1069 4.8058 19 6 2.3919 3.4529 5.9379 20 8 2.5135 4.1294 7.1123 21 6 2.1568 5.5130 7.1037 22 6 2.7223 2.1026 5.8754 23 8 3.1663 1.4581 6.9875 24 6 3.4875 0.0725 6.8497 25 6 2.5979 1.4155 4.6791 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5817 1.6876 -2.0284 32 1 2.0955 3.1410 -1.1384 33 1 5.7172 2.5731 -4.0836 34 1 1.7683 0.4441 2.3362 35 1 1.4625 3.9352 2.7283 36 1 1.6728 5.1537 4.8560 37 1 1.1114 5.6170 6.8127 38 1 2.3002 5.9314 8.1000 39 1 2.7868 6.0463 6.3919 40 1 4.2774 -0.0453 6.1079 41 1 3.8285 -0.3185 7.8083 42 1 2.6020 -0.4754 6.5276 43 1 2.8542 0.3676 4.6284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266980652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:46 Heat of formation + Delta-G solvation = -57.775434 kcal Electronic energy + Delta-G solvation = -25630.782543 eV Core-core repulsion = 21871.013149 eV Total energy + Delta-G solvation = -3759.769394 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74724 -39.73174 -38.42279 -37.08087 -35.40590 -33.98995 -32.59833 -30.44062 -30.26175 -29.53147 -27.73734 -27.30432 -26.55075 -23.27301 -23.00739 -22.25904 -21.55469 -19.44517 -18.62511 -17.82188 -17.37299 -16.90830 -16.39248 -16.06807 -15.96429 -15.27214 -15.01217 -14.82887 -14.56934 -14.50181 -14.03375 -13.76945 -13.47171 -13.03846 -12.86827 -12.66337 -12.50610 -12.31709 -12.21640 -11.94131 -11.53854 -11.49910 -11.38346 -11.22885 -11.09049 -11.01239 -10.78960 -10.52078 -10.19314 -9.68520 -9.51704 -9.33977 -8.59717 -8.53871 -7.83722 -7.32743 -6.09223 -4.08115 1.31669 1.53771 3.01592 3.24782 3.28598 3.32114 3.34730 3.36887 3.57727 3.98961 4.27182 4.38716 4.78300 4.94568 4.99507 5.07099 5.11641 5.14054 5.21429 5.23588 5.31422 5.38331 5.39524 5.44171 5.44814 5.52520 5.56050 5.80075 5.88998 6.06844 6.29063 6.35797 6.40888 6.52156 6.62295 6.85764 7.00738 7.03767 7.22632 7.46053 7.59860 7.60981 8.41993 8.46651 8.93852 9.11747 9.50806 11.04272 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.003461 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.170392 B = 8088.989509 C = 8650.222439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.232 3.768 5 C -0.530 4.530 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.701 3.299 14 O -0.566 6.566 15 N -0.693 5.693 16 C 0.187 3.813 17 C -0.117 4.117 18 C -0.149 4.149 19 C 0.071 3.929 20 O -0.311 6.311 21 C 0.027 3.973 22 C 0.117 3.883 23 O -0.307 6.307 24 C 0.026 3.974 25 C -0.208 4.208 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.687 -3.289 18.291 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.111 3.889 5 C -0.569 4.569 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.403 3.597 14 O -0.442 6.442 15 N -0.343 5.343 16 C 0.091 3.909 17 C -0.138 4.138 18 C -0.168 4.168 19 C 0.025 3.975 20 O -0.225 6.225 21 C -0.068 4.068 22 C 0.072 3.928 23 O -0.220 6.220 24 C -0.069 4.069 25 C -0.230 4.230 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.172 -2.417 18.371 21.138 hybrid contribution -0.488 -0.065 -1.065 1.173 sum -10.660 -2.482 17.307 20.477 Atomic orbital electron populations 1.22258 0.96562 1.01667 1.02501 1.21399 0.93527 0.83962 1.02839 1.47257 1.67290 1.13468 1.05631 1.19596 0.97273 0.93209 0.78840 1.21355 0.95413 1.33002 1.07095 0.90801 1.24849 0.94995 0.95787 0.97351 1.69891 1.15141 1.44990 1.23541 0.86855 0.81413 0.81655 0.79766 1.19878 1.21086 1.19059 1.15852 0.78837 0.84940 0.80045 1.90910 1.51008 1.16745 1.85525 1.42937 1.73583 1.14161 1.03582 1.17138 0.97267 0.92075 0.84423 1.20975 1.01365 0.93453 0.97976 1.20929 1.03894 1.00386 0.91595 1.18120 1.03686 0.89390 0.86310 1.86136 1.83409 1.23248 1.29668 1.23013 0.99985 0.80331 1.03468 1.17808 0.99505 0.89293 0.86243 1.86157 1.80453 1.24008 1.31401 1.23045 1.00221 0.80067 1.03573 1.20654 1.09263 1.01147 0.91898 0.91890 0.92914 0.91975 0.89265 0.92188 0.95028 0.94424 0.92552 0.76164 0.83920 0.84643 0.92908 0.88572 0.92739 0.92623 0.88411 0.92818 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.11 1.58 5.94 -4.04 -0.02 1.56 16 3 N -0.60 -12.10 2.46 -180.80 -0.44 -12.54 16 4 C 0.23 5.56 4.23 -5.19 -0.02 5.54 16 5 C -0.53 -15.12 9.94 -34.44 -0.34 -15.47 16 6 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 9 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.70 14.42 8.02 -86.92 -0.70 13.73 16 14 O -0.57 -13.97 13.60 5.29 0.07 -13.90 16 15 N -0.69 -11.00 5.23 -14.20 -0.07 -11.07 16 16 C 0.19 2.95 6.28 -83.63 -0.53 2.43 16 17 C -0.12 -1.90 8.65 -39.37 -0.34 -2.24 16 18 C -0.15 -2.09 9.03 -39.48 -0.36 -2.45 16 19 C 0.07 1.02 6.70 -39.13 -0.26 0.76 16 20 O -0.31 -4.21 10.28 -34.57 -0.36 -4.57 16 21 C 0.03 0.25 9.81 101.05 0.99 1.24 16 22 C 0.12 1.69 6.70 -39.14 -0.26 1.42 16 23 O -0.31 -4.08 10.28 -34.31 -0.35 -4.43 16 24 C 0.03 0.23 9.81 101.05 0.99 1.22 16 25 C -0.21 -2.83 8.95 -39.27 -0.35 -3.18 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.06 0.73 6.29 -51.93 -0.33 0.40 16 31 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 32 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.40 5.02 6.51 -40.82 -0.27 4.75 16 35 H 0.14 2.55 6.40 -52.49 -0.34 2.21 16 36 H 0.14 1.56 6.29 -52.48 -0.33 1.23 16 37 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 40 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 43 H 0.14 1.49 6.30 -52.49 -0.33 1.16 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -36.00 355.34 -6.64 -42.64 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.03 Total: 3.77 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.92 Total: 4.90 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.26 Total: -50.48 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.64 Total: -22.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.00 -6.64 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266980652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.135 kcal (2) G-P(sol) polarization free energy of solvation -36.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds