Wall clock time and date at job start Tue Mar 31 2020 10:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47480 * 2 1 4 4 C 1.36071 * 117.00024 * 180.02562 * 3 2 1 5 5 C 1.38545 * 120.00382 * 0.02562 * 4 3 2 6 6 C 1.38203 * 120.06619 * 179.97438 * 5 4 3 7 7 C 1.38834 * 120.07381 * 0.02562 * 6 5 4 8 8 N 1.40130 * 119.99421 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00227 * 324.90243 * 8 7 6 10 10 O 1.21599 * 120.00121 * 4.61664 * 9 8 7 11 11 N 1.34776 * 120.00614 * 184.61815 * 9 8 7 12 12 C 1.46499 * 120.00644 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47145 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46641 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00499 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99757 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00495 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99916 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47358 * 89.99861 * 18 16 14 20 20 H 1.48507 * 109.46788 * 210.00130 * 18 16 14 21 21 H 1.48502 * 109.46916 * 329.99693 * 18 16 14 22 22 C 1.38802 * 120.00706 * 359.74421 * 7 6 5 23 23 C 1.38512 * 119.93136 * 0.48659 * 22 7 6 24 24 O 1.35996 * 120.03382 * 179.79191 * 23 22 7 25 25 C 1.42897 * 117.00128 * 359.71982 * 24 23 22 26 26 H 1.08996 * 109.46806 * 300.00516 * 1 2 3 27 27 H 1.09000 * 109.46680 * 59.99957 * 1 2 3 28 28 H 1.09000 * 109.47340 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46870 * 239.99898 * 2 1 3 30 30 H 1.08998 * 109.47303 * 120.00458 * 2 1 3 31 31 H 1.07998 * 119.96722 * 359.97438 * 5 4 3 32 32 H 1.07998 * 119.95934 * 180.02562 * 6 5 4 33 33 H 0.97002 * 119.99878 * 144.90346 * 8 7 6 34 34 H 0.97003 * 119.99572 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.46892 * 299.99938 * 12 11 9 36 36 H 1.09000 * 109.46725 * 59.99683 * 12 11 9 37 37 H 1.08998 * 109.47224 * 299.99794 * 13 12 11 38 38 H 1.08992 * 109.47246 * 60.00072 * 13 12 11 39 39 H 0.96996 * 120.00626 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.03595 * 180.27121 * 22 7 6 41 41 H 1.08997 * 109.47067 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.46966 * 60.00610 * 25 24 23 43 43 H 1.08994 * 109.47410 * 300.00600 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3554 1.5255 -0.0005 5 6 4.1994 0.4267 -0.0016 6 6 5.5697 0.6062 -0.0027 7 6 6.1035 1.8879 -0.0022 8 7 7.4932 2.0680 -0.0027 9 6 8.2845 1.2072 0.6674 10 8 7.8016 0.2277 1.2023 11 7 9.6111 1.4319 0.7450 12 6 10.4713 0.4965 1.4739 13 6 11.9214 0.9801 1.4085 14 6 12.8062 0.0175 2.1578 15 1 12.3773 -0.8524 2.6328 16 6 14.1635 0.2468 2.2361 17 7 14.9358 -0.5934 2.8896 18 14 14.9055 1.7511 1.4139 19 1 14.9099 2.8867 2.3707 20 1 16.2985 1.4503 0.9962 21 1 14.0981 2.1120 0.2209 22 6 5.2608 2.9908 -0.0060 23 6 3.8874 2.8112 0.0000 24 8 3.0598 3.8904 0.0006 25 6 3.6753 5.1800 0.0011 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7860 -0.5710 -0.0016 32 1 6.2260 -0.2514 -0.0039 33 1 7.8856 2.8122 -0.4855 34 1 9.9965 2.2130 0.3180 35 1 10.1518 0.4448 2.5147 36 1 10.3977 -0.4926 1.0217 37 1 12.2406 1.0315 0.3676 38 1 11.9952 1.9692 1.8604 39 1 15.8907 -0.4319 2.9450 40 1 5.6755 3.9880 -0.0100 41 1 2.9044 5.9505 0.0011 42 1 4.2953 5.2870 -0.8890 43 1 4.2957 5.2861 0.8910 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273239801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:08 Heat of formation + Delta-G solvation = -78.356146 kcal Electronic energy + Delta-G solvation = -24447.178725 eV Core-core repulsion = 20686.516884 eV Total energy + Delta-G solvation = -3760.661841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94306 -39.89072 -38.68454 -37.23536 -35.05627 -34.27362 -32.82508 -31.92178 -30.46238 -30.19974 -28.77855 -27.15063 -24.95288 -24.12543 -22.73533 -21.71785 -20.85067 -20.73261 -18.79844 -18.36800 -17.86086 -16.87918 -16.54470 -16.40237 -16.01305 -15.69831 -15.38467 -14.88299 -14.73809 -14.43214 -14.15773 -13.90165 -13.69745 -13.41621 -13.29719 -12.88937 -12.66110 -12.63530 -12.39678 -12.18610 -11.67418 -11.55105 -11.48200 -11.26682 -11.19008 -11.02141 -10.44379 -10.31774 -10.02988 -9.91647 -9.69257 -9.36181 -8.78531 -8.66869 -8.57639 -7.57797 -6.13656 -4.14052 1.11366 1.33955 2.70484 3.03963 3.09042 3.22620 3.24726 3.30098 3.31306 3.69851 4.34595 4.34810 4.57747 4.67249 4.74841 4.80736 4.92050 4.97017 4.99522 5.11661 5.19040 5.19846 5.24084 5.32367 5.39686 5.51715 5.63070 5.75546 5.96068 6.17487 6.20806 6.24360 6.32765 6.52049 6.68578 6.76330 6.87720 6.95102 7.17722 7.19942 7.44137 7.63350 8.09837 8.41449 8.69981 8.90806 9.46072 10.99288 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026082 B = 0.002333 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.276253 B =12000.864337 C =12909.708664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.308 6.308 4 C 0.080 3.920 5 C -0.152 4.152 6 C -0.114 4.114 7 C 0.176 3.824 8 N -0.690 5.690 9 C 0.698 3.302 10 O -0.576 6.576 11 N -0.736 5.736 12 C 0.147 3.853 13 C -0.022 4.022 14 C -0.523 4.523 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.897 5.897 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.267 1.267 22 C -0.204 4.204 23 C 0.115 3.885 24 O -0.306 6.306 25 C 0.026 3.974 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.149 0.851 33 H 0.404 0.596 34 H 0.393 0.607 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.137 0.863 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.808 9.357 -9.692 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.223 6.223 4 C 0.034 3.966 5 C -0.172 4.172 6 C -0.135 4.135 7 C 0.080 3.920 8 N -0.339 5.339 9 C 0.399 3.601 10 O -0.453 6.453 11 N -0.389 5.389 12 C 0.025 3.975 13 C -0.060 4.060 14 C -0.561 4.561 15 H 0.095 0.905 16 C -0.133 4.133 17 N -0.536 5.536 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.225 4.225 23 C 0.069 3.931 24 O -0.219 6.219 25 C -0.069 4.069 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.239 0.761 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.154 0.846 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.307 8.533 -9.092 29.113 hybrid contribution 1.387 1.478 -0.738 2.158 sum -24.920 10.012 -9.830 28.598 Atomic orbital electron populations 1.21751 0.92876 1.02666 1.03452 1.22769 0.95793 0.82353 1.01367 1.86147 1.18117 1.28583 1.89415 1.18133 0.83100 0.90998 1.04335 1.20982 0.93406 0.97482 1.05319 1.21133 0.94419 0.97138 1.00794 1.17096 0.81745 0.93008 1.00133 1.42653 1.04352 1.32174 1.54683 1.16010 0.81775 0.82903 0.79442 1.90911 1.73767 1.29129 1.51449 1.45560 1.05174 1.29854 1.58300 1.21454 0.89600 0.91241 0.95245 1.19802 0.90998 0.97478 0.97679 1.20897 0.91697 1.09726 1.33821 0.90543 1.25005 0.97078 0.96428 0.94801 1.69897 1.05211 1.36621 1.41821 0.86746 0.78559 0.83393 0.80314 1.20239 1.21259 1.19136 1.20681 0.91131 0.99023 1.11682 1.17825 0.88126 0.85316 1.01828 1.86174 1.33642 1.12957 1.89152 1.23053 0.99824 0.82762 1.01272 0.91574 0.91617 0.90489 0.92150 0.92059 0.84551 0.83385 0.76053 0.77346 0.91894 0.91859 0.95970 0.96417 0.92516 0.84568 0.88317 0.92772 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.44 5.46 37.16 0.20 0.65 16 3 O -0.31 -3.73 9.92 -34.57 -0.34 -4.07 16 4 C 0.08 1.02 6.70 -39.13 -0.26 0.76 16 5 C -0.15 -1.85 9.03 -39.48 -0.36 -2.21 16 6 C -0.11 -1.58 8.69 -39.37 -0.34 -1.92 16 7 C 0.18 2.28 6.30 -83.63 -0.53 1.76 16 8 N -0.69 -8.49 5.35 -14.20 -0.08 -8.57 16 9 C 0.70 11.33 8.41 -86.92 -0.73 10.60 16 10 O -0.58 -11.48 13.78 5.28 0.07 -11.41 16 11 N -0.74 -11.64 5.56 -65.23 -0.36 -12.00 16 12 C 0.15 2.92 5.61 -4.04 -0.02 2.90 16 13 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 14 C -0.52 -14.43 9.66 -34.44 -0.33 -14.77 16 15 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 18 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 22 C -0.20 -2.28 8.95 -39.27 -0.35 -2.63 16 23 C 0.12 1.42 6.70 -39.14 -0.26 1.16 16 24 O -0.31 -3.55 10.28 -34.33 -0.35 -3.91 16 25 C 0.03 0.19 9.81 101.05 0.99 1.18 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.14 1.34 6.29 -52.49 -0.33 1.01 16 32 H 0.15 2.29 6.21 -52.49 -0.33 1.97 16 33 H 0.40 3.50 8.84 -40.82 -0.36 3.14 16 34 H 0.39 5.00 8.49 -40.82 -0.35 4.65 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 38 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.14 1.16 6.30 -52.48 -0.33 0.83 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 43 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -34.38 358.98 -7.55 -41.92 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.17 Total: 4.70 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.82 Total: -1.86 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.33 Total: -46.85 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.62 Total: -19.39 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.38 -7.55 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273239801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.434 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds