Wall clock time and date at job start Tue Mar 31 2020 10:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47480 * 2 1 4 4 C 1.36071 * 117.00024 * 180.02562 * 3 2 1 5 5 C 1.38545 * 120.00382 * 0.02562 * 4 3 2 6 6 C 1.38203 * 120.06619 * 179.97438 * 5 4 3 7 7 C 1.38834 * 120.07381 * 0.02562 * 6 5 4 8 8 N 1.40130 * 119.99421 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00227 * 324.90243 * 8 7 6 10 10 O 1.21599 * 120.00121 * 4.61664 * 9 8 7 11 11 N 1.34776 * 120.00614 * 184.61815 * 9 8 7 12 12 C 1.46499 * 120.00644 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47145 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46641 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00499 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99757 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00495 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99916 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47358 * 89.99861 * 18 16 14 20 20 H 1.48507 * 109.46788 * 210.00130 * 18 16 14 21 21 H 1.48502 * 109.46916 * 329.99693 * 18 16 14 22 22 C 1.38802 * 120.00706 * 359.74421 * 7 6 5 23 23 C 1.38512 * 119.93136 * 0.48659 * 22 7 6 24 24 O 1.35996 * 120.03382 * 179.79191 * 23 22 7 25 25 C 1.42897 * 117.00128 * 359.71982 * 24 23 22 26 26 H 1.08996 * 109.46806 * 300.00516 * 1 2 3 27 27 H 1.09000 * 109.46680 * 59.99957 * 1 2 3 28 28 H 1.09000 * 109.47340 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46870 * 239.99898 * 2 1 3 30 30 H 1.08998 * 109.47303 * 120.00458 * 2 1 3 31 31 H 1.07998 * 119.96722 * 359.97438 * 5 4 3 32 32 H 1.07998 * 119.95934 * 180.02562 * 6 5 4 33 33 H 0.97002 * 119.99878 * 144.90346 * 8 7 6 34 34 H 0.97003 * 119.99572 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.46892 * 299.99938 * 12 11 9 36 36 H 1.09000 * 109.46725 * 59.99683 * 12 11 9 37 37 H 1.08998 * 109.47224 * 299.99794 * 13 12 11 38 38 H 1.08992 * 109.47246 * 60.00072 * 13 12 11 39 39 H 0.96996 * 120.00626 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.03595 * 180.27121 * 22 7 6 41 41 H 1.08997 * 109.47067 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.46966 * 60.00610 * 25 24 23 43 43 H 1.08994 * 109.47410 * 300.00600 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3554 1.5255 -0.0005 5 6 4.1994 0.4267 -0.0016 6 6 5.5697 0.6062 -0.0027 7 6 6.1035 1.8879 -0.0022 8 7 7.4932 2.0680 -0.0027 9 6 8.2845 1.2072 0.6674 10 8 7.8016 0.2277 1.2023 11 7 9.6111 1.4319 0.7450 12 6 10.4713 0.4965 1.4739 13 6 11.9214 0.9801 1.4085 14 6 12.8062 0.0175 2.1578 15 1 12.3773 -0.8524 2.6328 16 6 14.1635 0.2468 2.2361 17 7 14.9358 -0.5934 2.8896 18 14 14.9055 1.7511 1.4139 19 1 14.9099 2.8867 2.3707 20 1 16.2985 1.4503 0.9962 21 1 14.0981 2.1120 0.2209 22 6 5.2608 2.9908 -0.0060 23 6 3.8874 2.8112 0.0000 24 8 3.0598 3.8904 0.0006 25 6 3.6753 5.1800 0.0011 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7860 -0.5710 -0.0016 32 1 6.2260 -0.2514 -0.0039 33 1 7.8856 2.8122 -0.4855 34 1 9.9965 2.2130 0.3180 35 1 10.1518 0.4448 2.5147 36 1 10.3977 -0.4926 1.0217 37 1 12.2406 1.0315 0.3676 38 1 11.9952 1.9692 1.8604 39 1 15.8907 -0.4319 2.9450 40 1 5.6755 3.9880 -0.0100 41 1 2.9044 5.9505 0.0011 42 1 4.2953 5.2870 -0.8890 43 1 4.2957 5.2861 0.8910 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273239801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:07 Heat of formation + Delta-G solvation = -103.023120 kcal Electronic energy + Delta-G solvation = -24448.248366 eV Core-core repulsion = 20686.516884 eV Total energy + Delta-G solvation = -3761.731481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94062 -41.00455 -39.48884 -38.26748 -36.59663 -35.40255 -34.74250 -32.66484 -31.95886 -31.27225 -29.69899 -27.95075 -26.68304 -24.84848 -23.88525 -22.65383 -22.46149 -21.93515 -19.72884 -19.57564 -18.96836 -18.71421 -17.47502 -17.18673 -17.04402 -16.68734 -16.37418 -16.31797 -15.87998 -15.80024 -15.36687 -15.26994 -15.03855 -14.58889 -14.22584 -14.09140 -13.75110 -13.35936 -13.30734 -13.21518 -13.02795 -12.91498 -12.34381 -12.27444 -12.18163 -12.13417 -11.98098 -11.75494 -11.72324 -11.51930 -11.26645 -10.80271 -10.77731 -10.09097 -9.61629 -8.54067 -8.28734 -6.36054 0.18977 0.35972 1.40133 1.42917 1.52893 1.54169 2.01370 2.27115 2.34544 2.37853 2.71634 3.06345 3.19897 3.76834 4.02124 4.08415 4.11195 4.22327 4.25748 4.31566 4.37857 4.43861 4.44416 4.45805 4.51553 4.65758 4.76577 4.78788 4.87789 4.96855 5.10293 5.19755 5.23930 5.30771 5.35893 5.42266 5.44218 5.65289 5.76066 5.95453 6.12216 6.23918 6.60421 6.71463 7.00598 7.28200 7.46574 8.87953 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026082 B = 0.002333 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.276253 B =12000.864337 C =12909.708664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.042 3.958 3 O -0.324 6.324 4 C 0.070 3.930 5 C -0.152 4.152 6 C -0.134 4.134 7 C 0.160 3.840 8 N -0.669 5.669 9 C 0.698 3.302 10 O -0.617 6.617 11 N -0.723 5.723 12 C 0.164 3.836 13 C -0.012 4.012 14 C -0.538 4.538 15 H 0.029 0.971 16 C 0.002 3.998 17 N -0.951 5.951 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.235 1.235 22 C -0.190 4.190 23 C 0.107 3.893 24 O -0.324 6.324 25 C 0.015 3.985 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.425 0.575 34 H 0.413 0.587 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.267 0.733 40 H 0.167 0.833 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.677 12.484 -11.436 31.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.239 6.239 4 C 0.024 3.976 5 C -0.172 4.172 6 C -0.155 4.155 7 C 0.064 3.936 8 N -0.318 5.318 9 C 0.399 3.601 10 O -0.497 6.497 11 N -0.378 5.378 12 C 0.040 3.960 13 C -0.050 4.050 14 C -0.577 4.577 15 H 0.047 0.953 16 C -0.195 4.195 17 N -0.591 5.591 18 Si 0.782 3.218 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.158 1.158 22 C -0.211 4.211 23 C 0.061 3.939 24 O -0.238 6.238 25 C -0.079 4.079 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.170 0.830 32 H 0.144 0.856 33 H 0.264 0.736 34 H 0.250 0.750 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.184 0.816 41 H 0.136 0.864 42 H 0.088 0.912 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.216 11.721 -10.881 31.567 hybrid contribution 1.508 0.446 -0.155 1.580 sum -25.708 12.167 -11.036 30.508 Atomic orbital electron populations 1.21778 0.91360 1.04064 1.03148 1.23061 0.97042 0.81081 1.02057 1.86137 1.17763 1.30666 1.89325 1.18372 0.83537 0.91491 1.04216 1.21081 0.92779 0.98385 1.04918 1.21070 0.94913 0.97093 1.02432 1.17227 0.81929 0.93277 1.01126 1.42305 1.03886 1.31837 1.53815 1.16091 0.81836 0.82857 0.79364 1.90900 1.74506 1.31091 1.53198 1.45107 1.04800 1.29837 1.58082 1.20935 0.89245 0.91309 0.94555 1.19652 0.90952 0.96733 0.97672 1.21248 0.92907 1.09495 1.34025 0.95264 1.26102 0.97546 1.00345 0.95503 1.70076 1.05709 1.39374 1.43933 0.85528 0.77525 0.78498 0.80231 1.19056 1.21454 1.15761 1.20845 0.90439 0.99751 1.10062 1.18053 0.88685 0.85707 1.01484 1.86161 1.34534 1.14137 1.88981 1.23381 1.00968 0.81157 1.02380 0.92035 0.91722 0.88236 0.91117 0.91690 0.83040 0.85618 0.73627 0.75026 0.93837 0.93675 0.94295 0.94491 0.92373 0.81555 0.86389 0.91171 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.04 0.68 5.46 71.98 0.39 1.07 16 3 O -0.32 -7.65 9.92 -80.40 -0.80 -8.44 16 4 C 0.07 1.73 6.70 22.56 0.15 1.88 16 5 C -0.15 -3.68 9.03 22.33 0.20 -3.48 16 6 C -0.13 -3.74 8.69 22.40 0.19 -3.55 16 7 C 0.16 3.94 6.30 38.09 0.24 4.18 16 8 N -0.67 -15.13 5.35 -317.10 -1.70 -16.82 16 9 C 0.70 21.99 8.41 179.06 1.51 23.50 16 10 O -0.62 -25.03 13.78 -4.03 -0.06 -25.09 16 11 N -0.72 -21.60 5.56 -478.53 -2.66 -24.26 16 12 C 0.16 6.49 5.61 86.38 0.48 6.98 16 13 C -0.01 -0.53 4.16 29.85 0.12 -0.40 16 14 C -0.54 -30.27 9.66 25.60 0.25 -30.03 16 15 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 16 C 0.00 0.12 5.47 84.66 0.46 0.58 16 17 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 18 Si 0.96 41.54 27.47 68.60 1.88 43.42 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 22 C -0.19 -3.83 8.95 22.47 0.20 -3.63 16 23 C 0.11 2.49 6.70 22.55 0.15 2.64 16 24 O -0.32 -6.94 10.28 -79.54 -0.82 -7.76 16 25 C 0.02 0.18 9.81 113.37 1.11 1.29 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 30 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 31 H 0.15 2.98 6.29 -2.91 -0.02 2.96 16 32 H 0.13 4.07 6.21 -2.91 -0.02 4.05 16 33 H 0.42 5.96 8.84 -92.71 -0.82 5.14 16 34 H 0.41 9.07 8.49 -92.71 -0.79 8.29 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.56 7.20 -2.39 -0.02 1.55 16 38 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 40 H 0.17 2.21 6.30 -2.91 -0.02 2.19 16 41 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.58 7.65 -2.39 -0.02 0.56 16 43 H 0.06 0.63 7.67 -2.39 -0.02 0.61 16 Total: -1.00 -77.61 358.98 1.75 -75.86 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.62 Total: 21.63 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 6.21 Total: 0.06 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -4.06 Total: -99.68 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -1.67 Total: -41.29 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.42 kcal Total: -77.61 1.75 -75.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273239801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.166 kcal (2) G-P(sol) polarization free energy of solvation -77.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds