Wall clock time and date at job start Tue Mar 31 2020 10:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47169 * 2 1 4 4 C 1.35897 * 116.99890 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05896 * 359.97438 * 4 3 2 6 6 C 1.38113 * 119.94692 * 179.97438 * 5 4 3 7 7 C 1.50705 * 119.97412 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47261 * 270.02365 * 7 6 5 9 9 C 1.46902 * 110.99557 * 66.04716 * 8 7 6 10 10 C 1.46894 * 111.00052 * 189.99530 * 8 7 6 11 11 H 1.09005 * 109.47026 * 55.00880 * 10 8 7 12 12 C 1.52997 * 109.47471 * 295.00317 * 10 8 7 13 13 C 1.50703 * 109.47165 * 175.00041 * 10 8 7 14 14 H 1.07995 * 119.99858 * 0.02562 * 13 10 8 15 15 C 1.37879 * 120.00122 * 180.02562 * 13 10 8 16 16 N 1.31518 * 119.99796 * 0.02562 * 15 13 10 17 17 Si 1.86791 * 119.99989 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47481 * 90.00115 * 17 15 13 19 19 H 1.48507 * 109.46952 * 210.00062 * 17 15 13 20 20 H 1.48503 * 109.47101 * 329.99413 * 17 15 13 21 21 C 1.38290 * 120.05528 * 0.02562 * 6 5 4 22 22 C 1.38243 * 120.11335 * 0.02562 * 21 6 5 23 23 C 1.38163 * 120.05315 * 0.24028 * 22 21 6 24 24 N 1.48002 * 120.02995 * 179.72125 * 23 22 21 25 25 O 1.21803 * 119.99868 * 359.97438 * 24 23 22 26 26 O 1.21803 * 120.00300 * 179.97438 * 24 23 22 27 27 H 1.09000 * 109.47047 * 60.00634 * 1 2 3 28 28 H 1.09000 * 109.46957 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47168 * 300.00227 * 1 2 3 30 30 H 1.09000 * 109.47168 * 239.99773 * 2 1 3 31 31 H 1.09004 * 109.46782 * 119.99813 * 2 1 3 32 32 H 1.07998 * 120.02555 * 0.02857 * 5 4 3 33 33 H 1.08999 * 109.46666 * 30.02832 * 7 6 5 34 34 H 1.09003 * 109.46751 * 150.02500 * 7 6 5 35 35 H 1.08996 * 109.47454 * 59.99817 * 9 8 7 36 36 H 1.09005 * 109.47232 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.47568 * 299.99401 * 9 8 7 38 38 H 1.08992 * 109.47202 * 300.00040 * 12 10 8 39 39 H 1.08999 * 109.46936 * 60.00215 * 12 10 8 40 40 H 1.09006 * 109.47095 * 179.97438 * 12 10 8 41 41 H 0.96999 * 119.99919 * 180.02562 * 16 15 13 42 42 H 1.08006 * 119.94322 * 179.97438 * 21 6 5 43 43 H 1.08002 * 119.97116 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0005 6 6 5.5689 0.6093 -0.0016 7 6 6.4886 -0.5845 -0.0010 8 7 6.7880 -0.9713 1.3841 9 6 5.5820 -1.4589 2.0668 10 6 7.8608 -1.9737 1.4307 11 1 8.7355 -1.5945 0.9021 12 6 7.3819 -3.2647 0.7638 13 6 8.2240 -2.2545 2.8660 14 1 7.7091 -1.7401 3.6639 15 6 9.2138 -3.1681 3.1607 16 7 9.8412 -3.7941 2.1890 17 14 9.6635 -3.5167 4.9398 18 1 8.8268 -4.6312 5.4527 19 1 11.0971 -3.8950 5.0230 20 1 9.4242 -2.3008 5.7582 21 6 6.0962 1.8878 -0.0022 22 6 5.2552 2.9849 -0.0011 23 6 3.8851 2.8066 0.0055 24 7 2.9853 3.9816 0.0129 25 8 3.4524 5.1065 0.0135 26 8 1.7775 3.8238 0.0182 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7886 -0.5728 -0.0005 33 1 6.0052 -1.4158 -0.5141 34 1 7.4152 -0.3294 -0.5153 35 1 5.1914 -2.3281 1.5377 36 1 5.8319 -1.7389 3.0902 37 1 4.8280 -0.6719 2.0790 38 1 6.5073 -3.6438 1.2923 39 1 7.1193 -3.0616 -0.2744 40 1 8.1782 -4.0083 0.7980 41 1 10.5372 -4.4371 2.3963 42 1 7.1669 2.0292 -0.0026 43 1 5.6695 3.9823 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276908833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:31 Heat of formation + Delta-G solvation = -10.672085 kcal Electronic energy + Delta-G solvation = -25767.864187 eV Core-core repulsion = 22010.137347 eV Total energy + Delta-G solvation = -3757.726840 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.06403 -40.49221 -38.52686 -37.04647 -36.29927 -33.46774 -32.33496 -31.76396 -30.18335 -28.93761 -27.75008 -25.63874 -25.32814 -24.40277 -23.51289 -22.06037 -21.55754 -19.61350 -19.28639 -18.52617 -17.70595 -17.43499 -16.43080 -16.38976 -16.14584 -15.48453 -14.82923 -14.77250 -14.54812 -14.15749 -13.70998 -13.48081 -13.38987 -12.91247 -12.77114 -12.33301 -12.14231 -12.04989 -11.68645 -11.53153 -11.39087 -11.30507 -11.25617 -11.05334 -10.96476 -10.94400 -10.86922 -10.77170 -10.62459 -10.18635 -10.02031 -9.48584 -9.04486 -8.72429 -8.52256 -7.44118 -6.14357 -4.18838 -0.03085 0.94626 1.44379 1.54999 2.64673 3.21433 3.22449 3.30073 3.33952 4.22752 4.28118 4.34726 4.60564 4.67949 4.70055 4.77748 4.89357 4.95061 5.00182 5.18546 5.24391 5.36607 5.50110 5.50825 5.63821 5.75198 5.79479 5.86538 5.96776 6.11686 6.22635 6.30454 6.45776 6.47055 6.62587 6.69799 6.86822 6.91057 7.24754 7.52287 7.65854 7.84136 7.89628 8.17209 8.37615 8.86355 9.46934 10.92689 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.003310 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.679300 B = 8457.385001 C = 9087.794180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.284 6.284 4 C 0.197 3.803 5 C -0.211 4.211 6 C 0.035 3.965 7 C 0.076 3.924 8 N -0.525 5.525 9 C 0.028 3.972 10 C 0.211 3.789 11 H 0.042 0.958 12 C -0.174 4.174 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.136 4.136 22 C -0.022 4.022 23 C -0.092 4.092 24 N 0.042 4.958 25 O -0.190 6.190 26 O -0.148 6.148 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.019 0.981 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.031 0.969 39 H 0.007 0.993 40 H 0.090 0.910 41 H 0.262 0.738 42 H 0.151 0.849 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 6.282 -6.785 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.196 6.196 4 C 0.148 3.852 5 C -0.231 4.231 6 C 0.034 3.966 7 C -0.052 4.052 8 N -0.249 5.249 9 C -0.120 4.120 10 C 0.106 3.894 11 H 0.060 0.940 12 C -0.233 4.233 13 C -0.542 4.542 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.156 4.156 22 C -0.041 4.041 23 C -0.178 4.178 24 N 0.558 4.442 25 O -0.397 6.397 26 O -0.367 6.367 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.165 0.835 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.037 0.963 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.026 0.974 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.168 0.832 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.126 6.169 -6.556 15.102 hybrid contribution -0.110 -1.016 0.523 1.148 sum -12.235 5.154 -6.033 14.583 Atomic orbital electron populations 1.21759 0.91926 1.02959 1.04034 1.23027 0.96692 0.81065 1.02060 1.86375 1.16760 1.30126 1.86299 1.18554 0.84131 0.91316 0.91210 1.21246 0.93575 0.97851 1.10397 1.20339 0.93098 0.96196 0.86972 1.21239 0.97519 0.92595 0.93801 1.62462 1.08476 1.43844 1.10094 1.22354 0.91941 0.96814 1.00926 1.19371 0.87790 0.85159 0.97101 0.93968 1.22428 1.01774 1.03652 0.95442 1.21072 1.19185 1.22625 0.91317 0.91862 1.24915 0.95949 0.95836 0.97429 1.69871 1.24687 1.27437 1.31236 0.86509 0.77627 0.78590 0.84783 1.20778 1.21192 1.19785 1.21064 1.01013 0.90263 1.03221 1.20917 0.88999 1.01797 0.92404 1.20447 0.90633 0.82907 1.23767 1.43338 1.01576 1.01996 0.97338 1.94504 1.80237 1.09670 1.55337 1.94559 0.96753 1.92683 1.52735 0.91233 0.90131 0.91126 0.91471 0.91240 0.83542 0.93673 0.89399 0.96304 0.90240 0.93944 0.95029 0.97372 0.89115 0.92861 0.83159 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.42 5.46 37.16 0.20 0.62 16 3 O -0.28 -3.63 8.15 -41.54 -0.34 -3.97 16 4 C 0.20 2.62 6.67 -39.21 -0.26 2.36 16 5 C -0.21 -2.60 6.95 -39.44 -0.27 -2.87 16 6 C 0.04 0.46 4.88 -104.65 -0.51 -0.05 16 7 C 0.08 1.15 4.56 -4.97 -0.02 1.13 16 8 N -0.53 -9.89 4.73 -237.73 -1.13 -11.01 16 9 C 0.03 0.49 8.37 60.07 0.50 0.99 16 10 C 0.21 4.81 2.34 -68.87 -0.16 4.65 16 11 H 0.04 1.06 8.03 -51.93 -0.42 0.64 16 12 C -0.17 -3.80 8.27 37.16 0.31 -3.49 16 13 C -0.50 -12.84 7.88 -34.44 -0.27 -13.11 16 14 H 0.06 1.63 6.77 -52.49 -0.36 1.27 16 15 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 16 N -0.89 -24.06 11.32 55.43 0.63 -23.44 16 17 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C -0.14 -1.65 9.70 -39.56 -0.38 -2.04 16 22 C -0.02 -0.27 9.55 -39.61 -0.38 -0.65 16 23 C -0.09 -1.30 6.87 -79.81 -0.55 -1.85 16 24 N 0.04 0.66 4.45 34.03 0.15 0.82 16 25 O -0.19 -3.03 18.45 -29.46 -0.54 -3.57 16 26 O -0.15 -2.46 17.24 -36.49 -0.63 -3.09 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.52 7.66 -51.93 -0.40 0.12 16 31 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.15 1.58 6.28 -52.49 -0.33 1.25 16 33 H 0.05 0.67 6.88 -51.93 -0.36 0.31 16 34 H 0.09 1.29 7.94 -51.93 -0.41 0.88 16 35 H 0.02 0.31 6.51 -51.93 -0.34 -0.02 16 36 H 0.08 1.54 6.41 -51.93 -0.33 1.21 16 37 H 0.04 0.65 6.16 -51.93 -0.32 0.33 16 38 H 0.03 0.67 6.47 -51.93 -0.34 0.33 16 39 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 40 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 41 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.16 1.62 7.61 -52.49 -0.40 1.22 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -28.74 350.31 -9.00 -37.74 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.89 Total: -0.57 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.51 Total: -13.55 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: -0.35 Total: -33.64 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.51 Total: -10.63 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.74 -9.00 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276908833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.063 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds