Wall clock time and date at job start Tue Mar 31 2020 09:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99952 * 2 1 4 4 C 1.53003 * 109.47051 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.46899 * 64.99559 * 4 3 2 6 6 C 1.35931 * 116.99653 * 179.97438 * 5 4 3 7 7 C 1.38850 * 120.40219 * 359.97438 * 6 5 4 8 8 N 1.31885 * 120.99708 * 180.02562 * 7 6 5 9 9 C 1.31687 * 121.93816 * 359.69223 * 8 7 6 10 10 C 1.39522 * 120.69046 * 0.59811 * 9 8 7 11 11 C 1.47859 * 120.53048 * 179.69437 * 10 9 8 12 12 O 1.21551 * 119.99724 * 40.01398 * 11 10 9 13 13 N 1.34772 * 120.00178 * 220.01041 * 11 10 9 14 14 C 1.46505 * 120.00187 * 355.74767 * 13 11 10 15 15 C 1.46496 * 120.00048 * 175.74562 * 13 11 10 16 16 H 1.08998 * 109.47215 * 0.02562 * 15 13 11 17 17 C 1.53000 * 109.47576 * 240.00231 * 15 13 11 18 18 C 1.50707 * 109.47107 * 120.00129 * 15 13 11 19 19 H 1.07996 * 119.99781 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00024 * 180.02562 * 18 15 13 21 21 N 1.31519 * 120.00194 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99953 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47382 * 89.99725 * 22 20 18 24 24 H 1.48509 * 109.46996 * 209.99609 * 22 20 18 25 25 H 1.48501 * 109.46878 * 329.99348 * 22 20 18 26 26 C 1.38843 * 120.40194 * 180.02562 * 6 5 4 27 27 H 1.09007 * 109.47189 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47632 * 299.99894 * 1 2 3 29 29 H 1.08999 * 109.47195 * 60.00562 * 1 2 3 30 30 H 1.08997 * 109.47712 * 59.99522 * 3 2 1 31 31 H 1.09005 * 109.46721 * 299.99698 * 3 2 1 32 32 H 1.08997 * 109.46931 * 304.99468 * 4 3 2 33 33 H 1.09003 * 109.46880 * 184.99810 * 4 3 2 34 34 H 1.07998 * 119.50140 * 0.03964 * 7 6 5 35 35 H 1.07999 * 119.65090 * 180.28793 * 9 8 7 36 36 H 1.08996 * 109.46871 * 274.64060 * 14 13 11 37 37 H 1.09005 * 109.46558 * 34.63712 * 14 13 11 38 38 H 1.08989 * 109.47215 * 154.63857 * 14 13 11 39 39 H 1.08992 * 109.47258 * 180.02562 * 17 15 13 40 40 H 1.09000 * 109.46398 * 300.00234 * 17 15 13 41 41 H 1.09003 * 109.46912 * 59.99904 * 17 15 13 42 42 H 0.96996 * 120.00046 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.88029 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5795 -1.2220 6 6 5.3022 0.3986 -1.3842 7 6 6.1901 0.7934 -0.3923 8 7 7.4899 0.6239 -0.5376 9 6 8.0041 0.0720 -1.6170 10 6 7.1817 -0.3470 -2.6633 11 6 7.7634 -0.9602 -3.8765 12 8 8.6905 -1.7402 -3.7784 13 7 7.2657 -0.6544 -5.0910 14 6 6.0898 0.2121 -5.2038 15 6 7.9006 -1.1884 -6.2985 16 1 8.7531 -1.8067 -6.0176 17 6 8.3773 -0.0311 -7.1785 18 6 6.9050 -2.0232 -7.0622 19 1 5.9002 -2.1442 -6.6856 20 6 7.2775 -2.6333 -8.2412 21 7 8.5014 -2.4863 -8.6996 22 14 6.0434 -3.6674 -9.1882 23 1 5.3135 -2.8068 -10.1535 24 1 6.7585 -4.7408 -9.9244 25 1 5.0771 -4.2770 -8.2395 26 6 5.7971 -0.1823 -2.5441 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.8105 1.2460 0.5118 35 1 9.0740 -0.0531 -1.6952 36 1 5.1854 -0.3883 -5.1061 37 1 6.1147 0.9629 -4.4139 38 1 6.0945 0.7064 -6.1752 39 1 8.8492 -0.4285 -8.0771 40 1 7.5244 0.5868 -7.4593 41 1 9.0973 0.5727 -6.6261 42 1 8.7635 -2.9158 -9.5289 43 1 5.1312 -0.4984 -3.3334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283620036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:54 Heat of formation + Delta-G solvation = -67.764629 kcal Electronic energy + Delta-G solvation = -25301.263967 eV Core-core repulsion = 21541.061408 eV Total energy + Delta-G solvation = -3760.202558 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87739 -39.28934 -38.35959 -37.55222 -35.43475 -33.38029 -32.25647 -31.31153 -29.83784 -29.20341 -26.77675 -26.42792 -25.26219 -24.72500 -23.42924 -22.86766 -21.13666 -19.22604 -17.87571 -17.24762 -17.08493 -16.84747 -16.53609 -16.07435 -15.84136 -15.54421 -15.45458 -15.18023 -14.55823 -14.21414 -13.87021 -13.56687 -13.22758 -13.11138 -12.86729 -12.58663 -12.40162 -12.22351 -11.93239 -11.89916 -11.61066 -11.48479 -11.36114 -11.08921 -10.80434 -10.74093 -10.30198 -10.18912 -10.11696 -9.84750 -9.58110 -9.18554 -8.99039 -8.54345 -8.44337 -7.67339 -6.08495 -4.16597 0.80500 1.23839 2.78065 3.25133 3.26983 3.30913 3.33983 3.37333 3.74465 3.92722 4.34519 4.39705 4.40732 4.61209 4.64287 4.77622 4.86528 4.90101 4.96947 4.98429 5.00808 5.13578 5.22845 5.27977 5.33646 5.44092 5.68066 5.82412 5.97809 6.07654 6.25914 6.37192 6.70218 6.73470 6.79074 7.01304 7.05368 7.35811 7.45945 7.68768 7.84993 7.98108 8.15677 8.43067 8.77318 8.94077 9.49830 10.96924 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.003475 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.504390 B = 8055.397161 C = 9565.074790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.057 3.943 5 O -0.299 6.299 6 C 0.072 3.928 7 C 0.024 3.976 8 N -0.453 5.453 9 C 0.110 3.890 10 C -0.124 4.124 11 C 0.549 3.451 12 O -0.538 6.538 13 N -0.581 5.581 14 C 0.081 3.919 15 C 0.257 3.743 16 H 0.066 0.934 17 C -0.148 4.148 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.082 4.082 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.031 0.969 41 H 0.013 0.987 42 H 0.264 0.736 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.254 11.226 16.469 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.018 4.018 5 O -0.212 6.212 6 C 0.025 3.975 7 C -0.134 4.134 8 N -0.162 5.162 9 C -0.049 4.049 10 C -0.129 4.129 11 C 0.334 3.666 12 O -0.416 6.416 13 N -0.311 5.311 14 C -0.063 4.063 15 C 0.157 3.843 16 H 0.084 0.916 17 C -0.206 4.206 18 C -0.565 4.565 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.109 4.109 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.174 0.826 35 H 0.184 0.816 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.050 0.950 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.162 10.815 16.850 23.427 hybrid contribution -1.565 -0.449 -1.044 1.934 sum -13.727 10.367 15.806 23.360 Atomic orbital electron populations 1.22771 0.80689 1.03139 0.99956 1.87986 1.19932 1.26931 1.95408 1.22566 0.91331 0.85958 1.01552 1.22899 0.94052 0.98327 0.86526 1.86162 1.19004 1.76976 1.39025 1.19865 0.83776 0.98349 0.95518 1.22978 0.89384 1.02198 0.98825 1.67575 1.13135 1.12253 1.23241 1.22782 1.00788 0.93950 0.87390 1.21153 0.93478 1.00603 0.97680 1.17963 0.83557 0.82219 0.82877 1.90768 1.29607 1.35191 1.86078 1.48213 1.28848 1.47235 1.06825 1.21867 0.88287 0.93565 1.02575 1.19033 0.94340 0.91945 0.78932 0.91632 1.22114 0.98592 0.97517 1.02409 1.21301 0.97995 1.30521 1.06662 0.92200 1.24886 0.95426 0.96243 0.97176 1.69874 1.17254 1.43736 1.21715 0.86478 0.81047 0.79972 0.79813 1.20605 1.21072 1.19891 1.21453 0.94814 0.97840 0.96778 0.89387 0.94098 0.93800 0.90986 0.91866 0.90801 0.90134 0.82593 0.81574 0.92963 0.92668 0.90347 0.88606 0.95007 0.96830 0.92633 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.77 10.67 -40.09 -0.43 -4.20 16 3 C 0.06 0.44 6.32 37.16 0.23 0.67 16 4 C 0.06 0.45 5.13 37.16 0.19 0.64 16 5 O -0.30 -3.56 10.11 -24.38 -0.25 -3.81 16 6 C 0.07 0.95 6.70 -39.13 -0.26 0.69 16 7 C 0.02 0.30 10.21 -17.30 -0.18 0.12 16 8 N -0.45 -6.61 10.34 -12.80 -0.13 -6.74 16 9 C 0.11 1.74 10.81 -17.14 -0.19 1.55 16 10 C -0.12 -2.12 5.19 -104.84 -0.54 -2.66 16 11 C 0.55 11.71 7.36 -12.33 -0.09 11.62 16 12 O -0.54 -13.46 16.28 5.32 0.09 -13.37 16 13 N -0.58 -12.50 2.75 -176.37 -0.49 -12.99 16 14 C 0.08 1.38 8.13 59.85 0.49 1.86 16 15 C 0.26 6.54 2.63 -69.08 -0.18 6.36 16 16 H 0.07 1.93 6.91 -51.93 -0.36 1.57 16 17 C -0.15 -3.50 8.96 37.16 0.33 -3.16 16 18 C -0.53 -14.19 8.37 -34.44 -0.29 -14.48 16 19 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 22 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 26 C -0.08 -1.24 7.68 -38.72 -0.30 -1.53 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 33 H 0.08 0.43 7.67 -51.93 -0.40 0.03 16 34 H 0.16 1.37 6.30 -52.49 -0.33 1.04 16 35 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 36 H 0.05 0.84 6.89 -51.93 -0.36 0.49 16 37 H 0.05 0.80 5.92 -51.93 -0.31 0.50 16 38 H 0.08 1.34 6.43 -51.94 -0.33 1.00 16 39 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 40 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 41 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.16 2.29 5.52 -52.49 -0.29 2.00 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -33.03 355.05 -5.94 -38.97 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.93 Total: 0.47 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 0.24 Total: 4.66 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.01 Total: -44.10 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.59 Total: -21.38 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.03 -5.94 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283620036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.793 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds