Wall clock time and date at job start Tue Mar 31 2020 09:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00119 * 2 1 4 4 C 1.53001 * 109.47288 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47147 * 64.99943 * 4 3 2 6 6 C 1.35931 * 116.99825 * 179.97438 * 5 4 3 7 7 C 1.38847 * 120.40312 * 359.97438 * 6 5 4 8 8 N 1.31883 * 120.99673 * 180.02562 * 7 6 5 9 9 C 1.31685 * 121.94310 * 359.68842 * 8 7 6 10 10 C 1.39525 * 120.68932 * 0.59568 * 9 8 7 11 11 C 1.47849 * 120.53476 * 179.69548 * 10 9 8 12 12 O 1.21542 * 120.00541 * 200.00448 * 11 10 9 13 13 N 1.34777 * 119.99495 * 20.00867 * 11 10 9 14 14 C 1.46496 * 120.00467 * 7.08778 * 13 11 10 15 15 C 1.46507 * 119.99954 * 187.09342 * 13 11 10 16 16 H 1.08996 * 109.46784 * 359.97438 * 15 13 11 17 17 C 1.52996 * 109.47067 * 119.99629 * 15 13 11 18 18 C 1.50700 * 109.46794 * 239.99941 * 15 13 11 19 19 H 1.07995 * 120.00357 * 359.97438 * 18 15 13 20 20 C 1.37876 * 119.99613 * 179.97438 * 18 15 13 21 21 N 1.31515 * 120.00242 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99955 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.46963 * 89.99758 * 22 20 18 24 24 H 1.48503 * 109.47187 * 209.99865 * 22 20 18 25 25 H 1.48496 * 109.47091 * 329.99852 * 22 20 18 26 26 C 1.38837 * 120.40491 * 179.97438 * 6 5 4 27 27 H 1.09003 * 109.46878 * 299.99478 * 1 2 3 28 28 H 1.08999 * 109.47460 * 59.99348 * 1 2 3 29 29 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47201 * 60.00158 * 3 2 1 31 31 H 1.09005 * 109.47160 * 300.00119 * 3 2 1 32 32 H 1.08999 * 109.46769 * 305.00059 * 4 3 2 33 33 H 1.09000 * 109.47187 * 185.00035 * 4 3 2 34 34 H 1.07999 * 119.50779 * 359.97438 * 7 6 5 35 35 H 1.08002 * 119.65668 * 180.29756 * 9 8 7 36 36 H 1.09001 * 109.47337 * 266.06847 * 14 13 11 37 37 H 1.08993 * 109.47634 * 146.06479 * 14 13 11 38 38 H 1.09003 * 109.46674 * 26.06710 * 14 13 11 39 39 H 1.08998 * 109.47567 * 300.00040 * 17 15 13 40 40 H 1.08996 * 109.47249 * 60.00370 * 17 15 13 41 41 H 1.08999 * 109.46856 * 180.02562 * 17 15 13 42 42 H 0.97002 * 120.00174 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.87939 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3022 0.3988 -1.3841 7 6 6.1901 0.7936 -0.3923 8 7 7.4899 0.6241 -0.5376 9 6 8.0042 0.0722 -1.6169 10 6 7.1819 -0.3469 -2.6633 11 6 7.7635 -0.9601 -3.8764 12 8 7.1233 -0.9896 -4.9091 13 7 9.0036 -1.4864 -3.8369 14 6 9.7144 -1.5919 -2.5603 15 6 9.6410 -1.9529 -5.0709 16 1 8.9651 -1.7945 -5.9112 17 6 10.9358 -1.1716 -5.3030 18 6 9.9553 -3.4218 -4.9495 19 1 9.7058 -3.9544 -4.0438 20 6 10.5615 -4.0856 -5.9949 21 7 10.8650 -3.4371 -7.0981 22 14 10.9519 -5.9062 -5.8443 23 1 9.7979 -6.7020 -6.3345 24 1 12.1533 -6.2238 -6.6573 25 1 11.2147 -6.2400 -4.4214 26 6 5.7971 -0.1830 -2.5435 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 5.8107 1.2471 0.5115 35 1 9.0741 -0.0531 -1.6950 36 1 10.3462 -0.7145 -2.4226 37 1 10.3337 -2.4888 -2.5623 38 1 8.9921 -1.6510 -1.7462 39 1 10.7084 -0.1092 -5.3907 40 1 11.6115 -1.3304 -4.4626 41 1 11.4097 -1.5184 -6.2212 42 1 11.2912 -3.9042 -7.8337 43 1 5.1312 -0.4998 -3.3325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283620038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:58 Heat of formation + Delta-G solvation = -53.744885 kcal Electronic energy + Delta-G solvation = -25076.959892 eV Core-core repulsion = 21317.365276 eV Total energy + Delta-G solvation = -3759.594617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89845 -39.36523 -38.33906 -37.53425 -35.52035 -33.15256 -32.46156 -31.35770 -30.14183 -28.93715 -26.81791 -26.55330 -25.26758 -24.78717 -23.25611 -22.90439 -21.05354 -19.25523 -17.98456 -17.38818 -17.23249 -16.94632 -16.38762 -16.05713 -15.66647 -15.56363 -15.38602 -15.10827 -14.44578 -14.32438 -13.78487 -13.49585 -13.15486 -13.06830 -12.96842 -12.66578 -12.53767 -12.30800 -11.98774 -11.89120 -11.65205 -11.40498 -11.10834 -10.97915 -10.85570 -10.71758 -10.28734 -10.17447 -10.12322 -9.79026 -9.58632 -9.21393 -9.01583 -8.49289 -8.43736 -7.67901 -6.08372 -4.16325 0.76028 1.25559 2.78343 3.26458 3.28115 3.30448 3.34599 3.36509 3.80757 4.00030 4.34267 4.39759 4.40527 4.59904 4.64171 4.78310 4.85093 4.88503 4.97674 4.99477 5.00594 5.15373 5.23319 5.27249 5.32424 5.40224 5.64847 5.85528 5.87498 6.11943 6.29703 6.37717 6.69592 6.72766 6.80406 7.01870 7.07302 7.34665 7.48515 7.69022 7.83797 7.98304 8.16113 8.42487 8.77850 8.94390 9.49917 10.97088 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.002789 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.044927 B =10036.813231 C =10616.560781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.057 3.943 5 O -0.300 6.300 6 C 0.070 3.930 7 C 0.025 3.975 8 N -0.455 5.455 9 C 0.070 3.930 10 C -0.131 4.131 11 C 0.548 3.452 12 O -0.540 6.540 13 N -0.582 5.582 14 C 0.066 3.934 15 C 0.258 3.742 16 H 0.065 0.935 17 C -0.147 4.147 18 C -0.526 4.526 19 H 0.061 0.939 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.055 4.055 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.157 0.843 35 H 0.188 0.812 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.012 0.988 40 H 0.031 0.969 41 H 0.095 0.905 42 H 0.264 0.736 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 10.704 16.637 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.018 4.018 5 O -0.212 6.212 6 C 0.023 3.977 7 C -0.132 4.132 8 N -0.164 5.164 9 C -0.088 4.088 10 C -0.136 4.136 11 C 0.334 3.666 12 O -0.418 6.418 13 N -0.312 5.312 14 C -0.077 4.077 15 C 0.158 3.842 16 H 0.083 0.917 17 C -0.206 4.206 18 C -0.565 4.565 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.082 4.082 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.174 0.826 35 H 0.204 0.796 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.031 0.969 40 H 0.051 0.949 41 H 0.114 0.886 42 H 0.074 0.926 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.240 10.696 16.421 23.651 hybrid contribution -0.486 -0.927 -0.319 1.094 sum -13.726 9.769 16.102 23.304 Atomic orbital electron populations 1.22769 0.80705 1.03130 0.99950 1.87984 1.19925 1.26952 1.95407 1.22569 0.91353 0.85939 1.01542 1.22896 0.94040 0.98336 0.86536 1.86161 1.19044 1.76999 1.39014 1.19857 0.83800 0.98424 0.95669 1.23008 0.89533 1.01920 0.98776 1.67629 1.13004 1.11963 1.23785 1.24153 1.02319 0.94251 0.88039 1.21151 0.93793 1.01524 0.97151 1.17941 0.82219 0.79430 0.87036 1.90747 1.59969 1.58946 1.32167 1.48157 1.14454 1.58327 1.10249 1.22227 0.97306 1.02428 0.85770 1.19025 0.90943 0.93130 0.81102 0.91708 1.22099 0.99234 0.95937 1.03289 1.21293 1.39978 0.93513 1.01721 0.92118 1.24888 0.95331 0.98489 0.95026 1.69875 1.41706 1.36072 1.04890 0.86478 0.77869 0.84873 0.78070 1.20590 1.21120 1.19892 1.21003 0.94533 0.96571 0.96081 0.94080 0.93836 0.89382 0.90955 0.91898 0.90778 0.90153 0.82610 0.79596 0.92745 0.89662 0.91381 0.96880 0.94947 0.88650 0.92638 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.81 10.67 -40.08 -0.43 -4.24 16 3 C 0.06 0.45 6.32 37.16 0.23 0.69 16 4 C 0.06 0.46 5.13 37.16 0.19 0.65 16 5 O -0.30 -3.74 10.11 -24.37 -0.25 -3.98 16 6 C 0.07 0.96 6.70 -39.13 -0.26 0.69 16 7 C 0.03 0.32 10.21 -17.30 -0.18 0.14 16 8 N -0.45 -6.46 10.34 -12.79 -0.13 -6.59 16 9 C 0.07 1.06 8.80 -17.13 -0.15 0.91 16 10 C -0.13 -2.27 5.58 -104.84 -0.58 -2.86 16 11 C 0.55 11.77 7.53 -12.33 -0.09 11.68 16 12 O -0.54 -13.61 15.95 5.33 0.08 -13.52 16 13 N -0.58 -12.44 2.75 -176.38 -0.49 -12.93 16 14 C 0.07 1.10 7.68 59.84 0.46 1.56 16 15 C 0.26 6.53 2.63 -69.08 -0.18 6.35 16 16 H 0.07 1.91 6.92 -51.93 -0.36 1.55 16 17 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 18 C -0.53 -14.14 8.02 -34.44 -0.28 -14.41 16 19 H 0.06 1.61 7.27 -52.49 -0.38 1.22 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 22 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.05 -0.89 9.67 -38.72 -0.37 -1.26 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.55 7.68 -51.93 -0.40 0.15 16 33 H 0.08 0.45 7.67 -51.93 -0.40 0.06 16 34 H 0.16 1.38 6.30 -52.49 -0.33 1.05 16 35 H 0.19 2.54 4.03 -52.49 -0.21 2.33 16 36 H 0.05 0.77 7.04 -51.93 -0.37 0.41 16 37 H 0.08 1.49 6.97 -51.93 -0.36 1.13 16 38 H 0.07 1.00 5.23 -51.93 -0.27 0.73 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 41 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.15 2.53 7.86 -52.49 -0.41 2.11 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -33.17 353.44 -6.01 -39.19 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.88 Total: 1.08 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 0.14 Total: 4.00 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.01 Total: -43.84 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.59 Total: -21.75 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.17 -6.01 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283620038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.557 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds