Wall clock time and date at job start Tue Mar 31 2020 09:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47372 * 2 1 4 4 C 1.50701 * 109.47209 * 120.00026 * 2 1 3 5 5 C 1.34507 * 125.79293 * 259.99737 * 4 2 1 6 6 C 1.41376 * 106.84381 * 180.02562 * 5 4 2 7 7 C 1.34515 * 106.84123 * 0.02562 * 6 5 4 8 8 O 1.34299 * 125.78453 * 80.02457 * 4 2 1 9 9 N 1.46507 * 109.47157 * 240.00375 * 2 1 3 10 10 C 1.46499 * 119.99419 * 299.99899 * 9 2 1 11 11 C 1.34774 * 120.00144 * 119.99800 * 9 2 1 12 12 O 1.21354 * 119.99884 * 356.40694 * 11 9 2 13 13 C 1.49446 * 119.99911 * 176.40540 * 11 9 2 14 14 O 1.21347 * 119.99961 * 5.92537 * 13 11 9 15 15 N 1.34779 * 120.00303 * 185.91681 * 13 11 9 16 16 C 1.46492 * 120.00039 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.46724 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.47119 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47359 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99557 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99824 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00365 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99741 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46830 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47001 * 119.99377 * 23 21 19 26 26 H 1.48497 * 109.46724 * 239.99402 * 23 21 19 27 27 H 1.08992 * 109.47613 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47400 * 300.00235 * 1 2 3 29 29 H 1.09001 * 109.47591 * 59.99678 * 1 2 3 30 30 H 1.08001 * 126.57721 * 0.28432 * 5 4 2 31 31 H 1.08003 * 126.58009 * 180.02562 * 6 5 4 32 32 H 1.08002 * 125.79327 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.46925 * 96.02668 * 10 9 2 34 34 H 1.08995 * 109.46706 * 216.02083 * 10 9 2 35 35 H 1.08996 * 109.47617 * 336.02492 * 10 9 2 36 36 H 0.97006 * 119.99309 * 0.02562 * 15 13 11 37 37 H 1.08996 * 109.47395 * 299.99851 * 16 15 13 38 38 H 1.08996 * 109.47707 * 60.00520 * 16 15 13 39 39 H 1.09001 * 109.47448 * 299.99718 * 17 16 15 40 40 H 1.08997 * 109.47617 * 59.99701 * 17 16 15 41 41 H 1.09005 * 109.46909 * 299.99666 * 18 17 16 42 42 H 1.08997 * 109.47222 * 59.99334 * 18 17 16 43 43 H 0.96997 * 120.00302 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.4732 -0.1192 2.3553 6 6 2.8443 -1.1543 3.2438 7 6 2.6085 -2.3164 2.6086 8 8 2.1161 -2.0413 1.3896 9 7 2.0183 -0.6906 -1.1963 10 6 1.6643 -2.0931 -1.4281 11 6 2.7931 -0.0355 -2.0834 12 8 3.0326 1.1436 -1.9254 13 6 3.3574 -0.7613 -3.2617 14 8 3.0324 -1.9100 -3.4793 15 7 4.2271 -0.1400 -4.0827 16 6 4.7797 -0.8513 -5.2380 17 6 5.7333 0.0731 -5.9976 18 6 6.3100 -0.6695 -7.2046 19 6 7.2497 0.2408 -7.9525 20 1 7.4183 1.2484 -7.6022 21 6 7.8933 -0.2124 -9.0845 22 7 7.6876 -1.4392 -9.5113 23 14 9.0576 0.9163 -10.0120 24 1 9.1147 2.2352 -9.3321 25 1 10.4145 0.3137 -10.0390 26 1 8.5685 1.0973 -11.4024 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 2.5287 0.9426 2.5450 31 1 3.2410 -1.0350 4.2412 32 1 2.7842 -3.3031 3.0109 33 1 0.7987 -2.1450 -2.0884 34 1 2.5058 -2.6084 -1.8911 35 1 1.4251 -2.5695 -0.4773 36 1 4.4870 0.7782 -3.9085 37 1 5.3234 -1.7321 -4.8963 38 1 3.9684 -1.1585 -5.8978 39 1 5.1900 0.9542 -6.3393 40 1 6.5446 0.3800 -5.3377 41 1 6.8533 -1.5507 -6.8633 42 1 5.4984 -0.9760 -7.8644 43 1 8.1406 -1.7581 -10.3075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286735443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:51 Heat of formation + Delta-G solvation = -52.148055 kcal Electronic energy + Delta-G solvation = -24761.873423 eV Core-core repulsion = 21002.348050 eV Total energy + Delta-G solvation = -3759.525373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.95286 -40.84581 -38.68410 -36.80693 -35.53726 -33.53152 -33.33261 -32.18132 -31.25960 -28.91319 -27.44392 -27.03579 -25.23487 -23.47674 -22.29402 -22.05608 -20.86481 -20.50146 -19.64838 -17.80192 -17.71145 -17.13333 -16.47044 -16.38268 -16.19925 -15.68804 -15.30057 -14.90992 -14.48886 -14.33526 -13.93218 -13.78619 -13.69276 -13.31107 -13.18747 -13.00251 -12.71943 -12.46185 -12.31777 -12.26065 -11.88559 -11.85571 -11.79381 -11.33899 -10.93527 -10.77168 -10.58031 -10.24691 -9.91566 -9.67510 -9.33694 -9.18437 -9.11394 -8.91979 -8.81905 -8.39019 -6.03537 -4.06441 1.30084 1.40187 2.12939 2.36799 2.61639 3.16718 3.29743 3.37310 3.40874 3.45262 4.13031 4.37844 4.44373 4.57907 4.65927 4.75550 4.85473 5.00722 5.21903 5.32583 5.33255 5.43717 5.50643 5.56746 5.58125 5.61187 5.68117 5.74809 5.91276 6.00148 6.06915 6.14855 6.33585 6.53118 6.67289 6.75638 6.83517 6.94340 7.26995 7.61107 7.64965 7.72458 7.94927 8.03293 8.36217 9.00325 9.58043 11.07781 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.002174 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.201639 B =12875.688517 C =12911.919011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.217 3.783 3 H 0.130 0.870 4 C -0.023 4.023 5 C -0.197 4.197 6 C -0.214 4.214 7 C -0.040 4.040 8 O -0.167 6.167 9 N -0.584 5.584 10 C 0.062 3.938 11 C 0.510 3.490 12 O -0.521 6.521 13 C 0.502 3.498 14 O -0.518 6.518 15 N -0.690 5.690 16 C 0.114 3.886 17 C -0.123 4.123 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.203 0.797 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 -0.044 25.287 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.114 3.886 3 H 0.148 0.852 4 C -0.074 4.074 5 C -0.217 4.217 6 C -0.233 4.233 7 C -0.108 4.108 8 O -0.063 6.063 9 N -0.318 5.318 10 C -0.080 4.080 11 C 0.293 3.707 12 O -0.397 6.397 13 C 0.282 3.718 14 O -0.395 6.395 15 N -0.342 5.342 16 C -0.008 4.008 17 C -0.161 4.161 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.219 0.781 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.177 -0.577 24.813 29.092 hybrid contribution 0.886 0.953 -0.151 1.310 sum -14.291 0.376 24.662 28.505 Atomic orbital electron populations 1.22172 0.92602 1.03517 1.03456 1.19735 0.94923 0.96184 0.77750 0.85214 1.22677 1.05564 0.81002 0.98189 1.21601 1.05407 1.00832 0.93877 1.21833 1.07398 0.92142 1.01915 1.24145 1.02431 1.00545 0.83674 1.84081 1.64905 1.24327 1.33017 1.47784 1.48949 1.13947 1.21135 1.22525 1.03845 0.79554 1.02034 1.20432 0.79145 0.87001 0.84084 1.90745 1.58679 1.15164 1.75105 1.19883 0.81040 0.86815 0.84035 1.90667 1.59656 1.16850 1.72343 1.46090 1.43231 1.17820 1.27029 1.21849 0.97537 0.96180 0.85218 1.21929 0.96956 0.98349 0.98842 1.19038 0.95863 0.95620 0.90833 1.21236 1.25673 0.99112 1.09978 0.92516 1.25031 0.96941 0.95136 0.97387 1.69969 1.43201 1.16009 1.24130 0.86518 0.80730 0.80914 0.79738 1.19724 1.20994 1.20996 0.91477 0.90550 0.90841 0.83259 0.83350 0.78052 0.92032 0.87203 0.90739 0.75335 0.91079 0.91029 0.92410 0.92443 0.96202 0.96182 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.18 37.15 0.34 -0.79 16 2 C 0.22 2.05 3.10 -69.08 -0.21 1.84 16 3 H 0.13 1.27 6.90 -51.93 -0.36 0.91 16 4 C -0.02 -0.22 6.05 -35.63 -0.22 -0.44 16 5 C -0.20 -1.75 10.80 -39.71 -0.43 -2.18 16 6 C -0.21 -1.69 10.91 -39.70 -0.43 -2.12 16 7 C -0.04 -0.31 12.09 29.42 0.36 0.05 16 8 O -0.17 -1.62 8.10 5.70 0.05 -1.58 16 9 N -0.58 -6.66 2.75 -175.77 -0.48 -7.15 16 10 C 0.06 0.65 8.42 59.85 0.50 1.15 16 11 C 0.51 6.98 7.73 -11.59 -0.09 6.89 16 12 O -0.52 -7.81 15.82 5.49 0.09 -7.72 16 13 C 0.50 7.52 7.77 -11.59 -0.09 7.43 16 14 O -0.52 -8.46 13.14 5.50 0.07 -8.38 16 15 N -0.69 -10.33 5.55 -60.74 -0.34 -10.67 16 16 C 0.11 1.94 5.67 -4.04 -0.02 1.91 16 17 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 23 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.20 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 1.37 5.36 -51.94 -0.28 1.09 16 35 H 0.07 0.69 5.56 -51.93 -0.29 0.40 16 36 H 0.41 5.64 7.96 -40.82 -0.32 5.32 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -32.31 362.98 -6.68 -38.99 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.26 Total: 2.10 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -0.98 Total: -1.62 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.08 Total: -43.72 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.21 Total: -17.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.31 -6.68 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286735443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.158 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds