Wall clock time and date at job start Tue Mar 31 2020 10:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47012 * 2 1 4 4 C 1.34759 * 117.00265 * 179.97438 * 3 2 1 5 5 O 1.21535 * 119.99730 * 0.02562 * 4 3 2 6 6 C 1.47249 * 120.00589 * 179.97438 * 4 3 2 7 7 C 1.41365 * 126.46854 * 0.04873 * 6 4 3 8 8 C 1.36323 * 107.00000 * 179.97438 * 7 6 4 9 9 C 1.46823 * 125.83684 * 180.02562 * 8 7 6 10 10 O 1.21673 * 119.99918 * 359.96920 * 9 8 7 11 11 N 1.34775 * 119.99693 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99580 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47150 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47409 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47282 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99604 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99711 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00441 * 0.02562 * 17 15 14 19 19 Si 1.86811 * 119.99637 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47294 * 90.00052 * 19 17 15 21 21 H 1.48502 * 109.46905 * 210.00292 * 19 17 15 22 22 H 1.48496 * 109.46837 * 329.99879 * 19 17 15 23 23 N 1.37789 * 108.32205 * 359.77665 * 8 7 6 24 24 H 0.97007 * 125.38263 * 180.23229 * 23 8 7 25 25 C 1.34220 * 109.23571 * 0.37312 * 23 8 7 26 26 C 1.50703 * 125.80705 * 179.89470 * 25 23 8 27 27 H 1.08998 * 109.47051 * 60.00011 * 1 2 3 28 28 H 1.09003 * 109.46609 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46854 * 299.99567 * 1 2 3 30 30 H 1.08998 * 109.46854 * 240.00433 * 2 1 3 31 31 H 1.08998 * 109.47051 * 119.99989 * 2 1 3 32 32 H 1.08004 * 126.49919 * 359.97438 * 7 6 4 33 33 H 0.96993 * 120.00555 * 359.97438 * 11 9 8 34 34 H 1.08998 * 109.47083 * 299.99072 * 12 11 9 35 35 H 1.08993 * 109.47467 * 59.99480 * 12 11 9 36 36 H 1.09000 * 109.47158 * 300.00363 * 13 12 11 37 37 H 1.09003 * 109.46886 * 59.99750 * 13 12 11 38 38 H 1.09006 * 109.47215 * 300.00067 * 14 13 12 39 39 H 1.08993 * 109.47129 * 59.99966 * 14 13 12 40 40 H 0.97001 * 120.00379 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47152 * 269.68949 * 26 25 23 42 42 H 1.09001 * 109.46980 * 149.69049 * 26 25 23 43 43 H 1.09004 * 109.47113 * 29.69030 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5456 0.0005 5 8 4.0903 0.5818 0.0005 6 6 3.9128 2.9063 0.0000 7 6 3.1835 4.1173 -0.0001 8 6 4.0947 5.1313 -0.0001 9 6 3.7839 6.5662 0.0004 10 8 2.6252 6.9377 0.0002 11 7 4.7820 7.4718 0.0009 12 6 4.4718 8.9037 0.0008 13 6 5.7737 9.7075 0.0021 14 6 5.4499 11.2028 0.0013 15 6 6.7322 11.9945 0.0032 16 1 7.6830 11.4824 0.0044 17 6 6.6914 13.3727 0.0024 18 7 5.5336 13.9963 0.0005 19 14 8.2809 14.3541 0.0040 20 1 8.7041 14.6134 -1.3955 21 1 8.0641 15.6462 0.7031 22 1 9.3380 13.5828 0.7060 23 7 5.3571 4.5792 0.0052 24 1 6.1886 5.0788 0.0095 25 6 5.2545 3.2409 0.0001 26 6 6.4058 2.2684 0.0011 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1084 4.2197 -0.0002 33 1 5.7056 7.1757 0.0013 34 1 3.8933 9.1500 -0.8895 35 1 3.8923 9.1500 0.8904 36 1 6.3520 9.4610 0.8925 37 1 6.3536 9.4612 -0.8874 38 1 4.8717 11.4489 -0.8894 39 1 4.8698 11.4494 0.8905 40 1 5.5049 14.9659 -0.0005 41 1 6.6836 2.0332 -1.0264 42 1 6.1088 1.3544 0.5154 43 1 7.2576 2.7142 0.5149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294565689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:59 Heat of formation + Delta-G solvation = -105.987017 kcal Electronic energy + Delta-G solvation = -23960.501779 eV Core-core repulsion = 20198.641773 eV Total energy + Delta-G solvation = -3761.860006 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.01376 -40.21013 -39.09748 -36.70172 -35.57222 -33.46913 -32.43583 -32.13719 -31.54746 -31.05215 -27.79138 -26.56661 -24.65322 -23.44813 -22.53381 -21.92876 -20.82436 -20.24035 -20.03126 -18.55865 -17.35673 -16.76517 -16.49990 -16.09601 -15.72870 -15.62768 -15.32021 -15.02229 -14.50816 -14.19698 -13.92112 -13.83130 -13.77089 -13.38806 -13.35300 -13.00288 -12.83138 -12.35307 -12.24194 -12.19235 -11.91862 -11.84739 -11.80662 -10.95677 -10.83330 -10.77617 -10.67549 -10.66139 -10.20621 -9.95764 -9.54084 -9.49952 -9.18672 -9.02478 -8.51562 -8.42429 -6.06795 -4.10415 1.07950 1.38299 2.28325 2.74817 2.90517 3.17372 3.26926 3.31419 3.33693 3.35998 4.33351 4.39508 4.55695 4.57542 4.62349 4.68017 4.74283 4.94850 5.01461 5.18564 5.29016 5.29995 5.43738 5.46041 5.55325 5.61483 5.64350 5.67244 5.76998 6.05126 6.17962 6.23463 6.28851 6.38217 6.49170 6.69848 6.82934 6.90279 7.50053 7.57118 7.65212 7.69006 7.91105 8.15649 8.31914 8.96013 9.54095 11.04367 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031354 B = 0.002015 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.809009 B =13892.896899 C =14744.050147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.351 6.351 4 C 0.545 3.455 5 O -0.522 6.522 6 C -0.232 4.232 7 C -0.051 4.051 8 C -0.053 4.053 9 C 0.583 3.417 10 O -0.526 6.526 11 N -0.725 5.725 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.892 5.892 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.522 5.522 24 H 0.424 0.576 25 C 0.141 3.859 26 C -0.102 4.102 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.391 0.609 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -28.395 0.018 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.268 6.268 4 C 0.392 3.608 5 O -0.413 6.413 6 C -0.240 4.240 7 C -0.076 4.076 8 C -0.163 4.163 9 C 0.369 3.631 10 O -0.402 6.402 11 N -0.375 5.375 12 C -0.006 4.006 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.119 5.119 24 H 0.263 0.737 25 C 0.017 3.983 26 C -0.159 4.159 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.180 0.820 33 H 0.224 0.776 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.473 -28.049 0.026 28.264 hybrid contribution 1.715 0.674 -0.023 1.843 sum -1.758 -27.376 0.004 27.432 Atomic orbital electron populations 1.21815 0.92592 1.02901 1.03772 1.23008 0.95354 0.80075 1.02506 1.86578 1.23766 1.32138 1.84340 1.20016 0.80357 0.88420 0.72004 1.90789 1.60277 1.42384 1.47842 1.18322 0.92019 0.90866 1.22748 1.21251 0.99818 0.88899 0.97598 1.20262 0.83783 0.93792 1.18501 1.17034 0.85749 0.83193 0.77173 1.90864 1.19320 1.79764 1.50228 1.46113 1.08444 1.08001 1.74951 1.21727 0.99660 0.76715 1.02464 1.21904 0.94166 0.99020 1.00824 1.19032 0.97276 0.87318 0.97781 1.21179 0.92617 0.91258 1.51213 0.92682 1.25029 0.96177 0.98015 0.95214 1.69957 1.24133 1.08684 1.50339 0.86578 0.83632 0.79564 0.78110 1.20642 1.21153 1.19934 1.41771 1.08631 1.06018 1.55447 0.73730 1.20784 0.95550 0.83442 0.98565 1.20716 0.93216 0.97737 1.04212 0.91345 0.90277 0.91352 0.91263 0.91265 0.81997 0.77569 0.91319 0.91321 0.92725 0.92734 0.96178 0.96168 0.92862 0.89552 0.87774 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.51 6.20 37.16 0.23 0.74 16 3 O -0.35 -3.79 10.07 -40.65 -0.41 -4.20 16 4 C 0.55 6.36 7.95 34.39 0.27 6.64 16 5 O -0.52 -6.58 14.58 -19.29 -0.28 -6.86 16 6 C -0.23 -2.60 6.13 -105.03 -0.64 -3.24 16 7 C -0.05 -0.61 10.41 -39.08 -0.41 -1.02 16 8 C -0.05 -0.63 6.99 -82.41 -0.58 -1.21 16 9 C 0.58 8.48 7.79 -12.79 -0.10 8.38 16 10 O -0.53 -9.70 16.86 5.21 0.09 -9.61 16 11 N -0.73 -9.64 5.55 -61.57 -0.34 -9.98 16 12 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 13 C -0.12 -2.24 5.27 -26.73 -0.14 -2.39 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 N -0.52 -4.38 5.91 -5.61 -0.03 -4.42 16 24 H 0.42 2.24 8.13 -40.82 -0.33 1.91 16 25 C 0.14 1.27 7.21 -81.53 -0.59 0.69 16 26 C -0.10 -0.66 9.88 36.01 0.36 -0.30 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 33 H 0.39 3.90 7.55 -40.82 -0.31 3.59 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.81 6.46 -51.93 -0.34 0.48 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -34.15 372.53 -7.87 -42.02 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.44 Total: -0.08 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.79 Total: -2.96 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.36 Total: -40.04 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.60 Total: -20.67 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.15 -7.87 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294565689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.965 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds