Wall clock time and date at job start Tue Mar 31 2020 09:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46964 * 2 1 4 4 C 1.52996 * 109.47227 * 120.00178 * 2 1 3 5 5 N 1.46900 * 109.46972 * 296.92870 * 4 2 1 6 6 C 1.46900 * 110.99749 * 164.33860 * 5 4 2 7 7 C 1.50705 * 109.46925 * 189.99781 * 6 5 4 8 8 H 1.07994 * 120.00192 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99746 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99818 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00124 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47182 * 89.99851 * 11 9 7 13 13 H 1.48505 * 109.46894 * 209.99899 * 11 9 7 14 14 H 1.48498 * 109.47009 * 329.99377 * 11 9 7 15 15 C 1.46897 * 111.00109 * 288.29008 * 5 4 2 16 16 C 1.53008 * 109.47233 * 298.62354 * 15 5 4 17 17 C 1.47201 * 109.47038 * 181.33889 * 16 15 5 18 18 N 5.71962 * 129.44017 * 43.61537 * 2 1 3 19 19 C 1.50700 * 109.46869 * 240.00116 * 2 1 3 20 20 C 1.38207 * 119.97728 * 299.72520 * 19 2 1 21 21 C 1.38472 * 120.02692 * 179.73187 * 20 19 2 22 22 F 1.35098 * 120.01533 * 180.29739 * 21 20 19 23 23 C 1.38416 * 119.97607 * 0.54193 * 21 20 19 24 24 C 1.38428 * 119.94604 * 359.72730 * 23 21 20 25 25 F 1.35102 * 120.01170 * 180.02562 * 24 23 21 26 26 C 1.38213 * 119.97422 * 119.99975 * 19 2 1 27 27 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46905 * 299.99802 * 1 2 3 29 29 H 1.08996 * 109.47240 * 59.99873 * 1 2 3 30 30 H 1.09001 * 109.47362 * 176.92659 * 4 2 1 31 31 H 1.09001 * 109.47266 * 56.92764 * 4 2 1 32 32 H 1.08997 * 109.47279 * 309.99519 * 6 5 4 33 33 H 1.09003 * 109.47214 * 70.00226 * 6 5 4 34 34 H 0.96992 * 120.00220 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47306 * 58.61987 * 15 5 4 36 36 H 1.08998 * 109.47434 * 178.62082 * 15 5 4 37 37 H 1.08999 * 109.47018 * 301.33839 * 16 15 5 38 38 H 1.09005 * 109.46758 * 61.34006 * 16 15 5 39 39 H 1.08008 * 119.98468 * 359.97438 * 20 19 2 40 40 H 1.07995 * 120.03095 * 179.75665 * 23 21 20 41 41 H 1.07994 * 119.98548 * 359.97438 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6119 0.0127 2.4475 6 6 1.7503 -0.8180 3.6511 7 6 1.0801 -0.1329 4.8141 8 1 0.5999 0.8241 4.6733 9 6 1.0801 -0.7279 6.0579 10 7 0.4948 -0.1302 7.0727 11 14 1.9113 -2.3829 6.3016 12 1 3.3327 -2.1725 6.6766 13 1 1.2195 -3.1299 7.3826 14 1 1.8425 -3.1620 5.0393 15 6 2.3565 1.2712 2.5880 16 6 3.8482 0.9669 2.7406 17 6 4.5906 2.2262 2.9136 18 7 5.1636 3.1980 3.0470 19 6 2.0323 -0.7104 -1.2305 20 6 1.7028 -2.0352 -1.4459 21 6 2.1592 -2.6874 -2.5790 22 9 1.8319 -3.9806 -2.7923 23 6 2.9549 -2.0152 -3.4905 24 6 3.2890 -0.6899 -3.2709 25 9 4.0652 -0.0324 -4.1600 26 6 2.8269 -0.0382 -2.1399 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 3.1287 -0.7692 1.2221 31 1 1.6325 -1.7318 1.2771 32 1 1.2803 -1.7865 3.4801 33 1 2.8076 -0.9614 3.8740 34 1 0.4951 -0.5485 7.9478 35 1 2.2000 1.8868 1.7023 36 1 2.0028 1.8062 3.4694 37 1 4.0021 0.3316 3.6128 38 1 4.2072 0.4530 1.8488 39 1 1.0858 -2.5609 -0.7321 40 1 3.3146 -2.5241 -4.3725 41 1 3.0871 0.9959 -1.9686 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295424489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:13 Heat of formation + Delta-G solvation = -39.928105 kcal Electronic energy + Delta-G solvation = -24878.161920 eV Core-core repulsion = 21008.078928 eV Total energy + Delta-G solvation = -3870.082992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.24689 -49.21090 -39.74802 -38.08262 -36.16889 -34.36895 -32.56594 -30.72728 -30.50073 -29.73646 -27.76337 -25.71779 -24.21308 -23.12420 -22.95948 -20.68579 -19.49269 -17.93996 -17.67988 -17.24621 -16.82446 -16.64428 -16.20713 -15.96132 -15.53076 -15.44203 -14.80797 -14.71895 -14.50517 -14.26348 -13.82115 -13.60077 -13.38123 -13.06862 -12.83823 -12.51482 -12.23940 -12.23326 -12.18312 -12.01323 -11.82167 -11.66206 -11.49144 -11.16354 -11.13341 -10.81958 -10.77444 -10.46913 -10.09952 -9.93321 -9.41839 -9.10864 -8.99612 -8.66937 -7.61963 -6.14026 -4.12804 0.72657 0.73646 3.00597 3.03194 3.10585 3.20450 3.28664 3.30586 3.57565 4.08912 4.14946 4.28344 4.32802 4.54760 4.61689 4.78695 4.92299 4.97841 5.16743 5.21764 5.27808 5.35930 5.45366 5.54714 5.55096 5.69362 5.71969 5.77202 5.81745 5.88443 5.98827 6.09368 6.12361 6.36094 6.48523 6.51665 6.57715 6.69435 6.80118 7.43704 7.65609 7.77079 7.85872 8.51773 8.94702 9.46644 10.98824 Molecular weight = 308.14amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.003929 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.232680 B = 7125.533482 C = 8376.780767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 H 0.086 0.914 4 C 0.050 3.950 5 N -0.513 5.513 6 C 0.156 3.844 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.896 5.896 11 Si 0.870 3.130 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.068 3.932 16 C -0.074 4.074 17 C 0.222 3.778 18 N -0.456 5.456 19 C -0.009 4.009 20 C -0.157 4.157 21 C 0.132 3.868 22 F -0.133 7.133 23 C -0.203 4.203 24 C 0.130 3.870 25 F -0.134 7.134 26 C -0.163 4.163 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.032 0.968 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -4.234 -19.672 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.070 4.070 3 H 0.104 0.896 4 C -0.079 4.079 5 N -0.234 5.234 6 C 0.031 3.969 7 C -0.551 4.551 8 H 0.101 0.899 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.698 3.302 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.191 1.191 15 C -0.063 4.063 16 C -0.116 4.116 17 C -0.095 4.095 18 N -0.133 5.133 19 C -0.010 4.010 20 C -0.176 4.176 21 C 0.112 3.888 22 F -0.111 7.111 23 C -0.222 4.222 24 C 0.111 3.889 25 F -0.112 7.112 26 C -0.181 4.181 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.009 0.991 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.660 -2.733 -19.357 19.889 hybrid contribution 1.251 -1.759 0.076 2.160 sum 4.910 -4.492 -19.281 20.397 Atomic orbital electron populations 1.21741 0.92662 1.02294 1.02518 1.20284 0.97630 0.99161 0.89971 0.89615 1.22278 0.97720 0.97793 0.90090 1.62181 1.53264 1.05066 1.02889 1.20315 0.95013 0.93644 0.87965 1.20982 1.35583 1.07506 0.91039 0.89944 1.24887 0.95106 0.97132 0.95980 1.69878 1.43832 1.38837 1.00939 0.86947 0.79910 0.85025 0.78361 1.20315 1.21170 1.19067 1.22156 0.86723 0.93987 1.03387 1.20219 0.97260 0.88903 1.05243 1.29177 0.93098 0.94703 0.92569 1.81160 1.10535 1.12024 1.09629 1.19703 0.93234 0.92595 0.95432 1.21158 1.03465 0.95454 0.97550 1.17278 0.97381 0.78995 0.95121 1.91534 1.90795 1.34015 1.94755 1.20967 1.04089 0.94544 1.02639 1.17265 0.93082 0.90012 0.88582 1.91530 1.72248 1.80645 1.66797 1.21168 1.01149 1.01780 0.94049 0.92780 0.89724 0.93564 0.94555 0.90654 0.95005 0.99131 0.92562 0.91353 0.88264 0.86476 0.88187 0.83655 0.83768 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.88 37.16 0.33 -1.12 16 2 C -0.05 -0.53 2.55 -91.77 -0.23 -0.76 16 3 H 0.09 0.83 6.35 -51.93 -0.33 0.50 16 4 C 0.05 0.61 3.99 -3.83 -0.02 0.59 16 5 N -0.51 -8.04 4.03 -236.07 -0.95 -8.99 16 6 C 0.16 3.09 3.58 -4.97 -0.02 3.07 16 7 C -0.51 -12.76 9.03 -34.44 -0.31 -13.07 16 8 H 0.08 2.26 7.36 -52.49 -0.39 1.87 16 9 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 10 N -0.90 -25.79 13.96 55.43 0.77 -25.02 16 11 Si 0.87 19.66 27.47 -169.99 -4.67 14.99 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.27 -5.66 6.54 56.52 0.37 -5.29 16 15 C 0.07 0.97 4.97 -3.82 -0.02 0.96 16 16 C -0.07 -0.97 5.06 -29.51 -0.15 -1.12 16 17 C 0.22 3.33 15.43 -20.76 -0.32 3.00 16 18 N -0.46 -7.90 18.54 42.15 0.78 -7.12 16 19 C -0.01 -0.08 4.78 -104.64 -0.50 -0.58 16 20 C -0.16 -1.53 8.72 -39.51 -0.34 -1.87 16 21 C 0.13 1.31 7.30 -39.43 -0.29 1.02 16 22 F -0.13 -1.41 17.27 2.25 0.04 -1.37 16 23 C -0.20 -1.89 10.01 -39.45 -0.39 -2.28 16 24 C 0.13 1.26 7.30 -39.43 -0.29 0.97 16 25 F -0.13 -1.38 17.27 2.25 0.04 -1.34 16 26 C -0.16 -1.50 9.65 -39.51 -0.38 -1.88 16 27 H 0.05 0.57 7.40 -51.93 -0.38 0.18 16 28 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.41 5.84 -51.93 -0.30 0.10 16 31 H 0.08 0.94 7.15 -51.93 -0.37 0.57 16 32 H 0.03 0.65 6.92 -51.93 -0.36 0.29 16 33 H -0.01 -0.17 5.48 -51.93 -0.28 -0.45 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.07 0.83 6.58 -51.93 -0.34 0.49 16 36 H 0.10 1.73 6.79 -51.93 -0.35 1.38 16 37 H 0.12 1.67 6.27 -51.93 -0.33 1.35 16 38 H 0.10 1.04 6.27 -51.93 -0.33 0.71 16 39 H 0.15 1.33 7.13 -52.48 -0.37 0.95 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.14 1.12 7.94 -52.49 -0.42 0.71 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -28.51 345.71 -6.78 -35.28 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.97 Total: -0.37 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -3.03 Total: -11.28 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.60 Total: -41.13 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 14.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.51 -6.78 -35.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295424489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.644 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds