Wall clock time and date at job start Tue Mar 31 2020 10:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46726 * 2 1 4 4 C 1.36905 * 119.99861 * 82.58423 * 3 2 1 5 5 H 1.08003 * 119.99656 * 228.12489 * 4 3 2 6 6 C 1.39021 * 119.99945 * 48.39814 * 4 3 2 7 7 N 1.31382 * 120.00458 * 1.70569 * 6 4 3 8 8 Si 1.86805 * 119.99734 * 181.70668 * 6 4 3 9 9 H 1.48500 * 109.46948 * 60.00302 * 8 6 4 10 10 H 1.48503 * 109.46971 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47098 * 300.00068 * 8 6 4 12 12 C 1.34777 * 119.99860 * 262.57607 * 3 2 1 13 13 O 1.21622 * 119.99630 * 174.06335 * 12 3 2 14 14 C 1.47501 * 120.00334 * 354.07115 * 12 3 2 15 15 C 1.40322 * 120.50179 * 235.84446 * 14 12 3 16 16 C 1.36954 * 118.46831 * 179.97438 * 15 14 12 17 17 C 1.39149 * 119.40139 * 359.97438 * 16 15 14 18 18 O 1.35510 * 119.51479 * 179.97438 * 17 16 15 19 19 C 1.42902 * 117.00382 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.46822 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.46594 * 179.97438 * 20 19 18 22 22 O 1.42906 * 109.47174 * 180.02562 * 21 20 19 23 23 C 1.42889 * 114.00233 * 180.02562 * 22 21 20 24 24 N 1.32433 * 120.97947 * 0.02562 * 17 16 15 25 25 C 1.31697 * 121.66439 * 359.72400 * 24 17 16 26 26 H 1.09001 * 109.46843 * 159.40585 * 1 2 3 27 27 H 1.08998 * 109.46991 * 279.40533 * 1 2 3 28 28 H 1.09004 * 109.46869 * 39.40992 * 1 2 3 29 29 H 1.09004 * 109.47230 * 240.00430 * 2 1 3 30 30 H 1.09001 * 109.47359 * 119.99754 * 2 1 3 31 31 H 0.96997 * 120.00157 * 180.02562 * 7 6 4 32 32 H 1.08004 * 120.76287 * 359.97438 * 15 14 12 33 33 H 1.08003 * 120.30037 * 180.02562 * 16 15 14 34 34 H 1.08999 * 109.46833 * 300.00790 * 19 18 17 35 35 H 1.09004 * 109.46676 * 60.00373 * 19 18 17 36 36 H 1.08994 * 109.47811 * 300.00410 * 20 19 18 37 37 H 1.09004 * 109.47158 * 60.00708 * 20 19 18 38 38 H 1.08999 * 109.47497 * 300.00219 * 21 20 19 39 39 H 1.08996 * 109.47112 * 60.00527 * 21 20 19 40 40 H 1.09004 * 109.47141 * 59.99884 * 23 22 21 41 41 H 1.09006 * 109.47747 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47268 * 299.99788 * 23 22 21 43 43 H 1.07995 * 119.75642 * 180.26457 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1021 2.0777 1.1757 5 1 1.7022 3.0789 1.2400 6 6 2.7071 1.4982 2.2852 7 7 3.2281 0.2954 2.1961 8 14 2.7790 2.4298 3.9028 9 1 1.3994 2.7305 4.3626 10 1 3.4699 1.5994 4.9219 11 1 3.5244 3.6995 3.7100 12 6 2.3850 1.9664 -1.1574 13 8 2.6872 3.1444 -1.1743 14 6 2.4198 1.1782 -2.4037 15 6 3.5946 1.1051 -3.1676 16 6 3.5804 0.3609 -4.3173 17 6 2.4122 -0.2960 -4.6915 18 8 2.3955 -1.0325 -5.8288 19 6 1.1683 -1.6846 -6.1616 20 6 1.3415 -2.4613 -7.4683 21 6 0.0277 -3.1600 -7.8242 22 8 0.1895 -3.8859 -9.0444 23 6 -0.9860 -4.5785 -9.4690 24 7 1.3161 -0.2113 -3.9531 25 6 1.2861 0.4888 -2.8380 26 1 -0.3633 -0.9620 -0.3615 27 1 -0.3633 0.1679 1.0138 28 1 -0.3633 0.7940 -0.6525 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6498 -0.1090 2.9703 32 1 4.4893 1.6237 -2.8561 33 1 4.4682 0.2839 -4.9275 34 1 0.8946 -2.3735 -5.3624 35 1 0.3824 -0.9392 -6.2838 36 1 1.6150 -1.7721 -8.2672 37 1 2.1275 -3.2066 -7.3465 38 1 -0.2454 -3.8493 -7.0253 39 1 -0.7586 -2.4150 -7.9459 40 1 -1.7930 -3.8626 -9.6253 41 1 -0.7812 -5.1040 -10.4019 42 1 -1.2807 -5.2969 -8.7041 43 1 0.3766 0.5333 -2.2574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299730936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:06 Heat of formation + Delta-G solvation = -77.865388 kcal Electronic energy + Delta-G solvation = -24937.577242 eV Core-core repulsion = 21176.936682 eV Total energy + Delta-G solvation = -3760.640560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55169 -38.88855 -38.27156 -37.31511 -35.05157 -33.31412 -32.28814 -32.15201 -30.11058 -29.51822 -27.52174 -25.68667 -25.10860 -23.53676 -23.06044 -22.14574 -21.66102 -19.57821 -18.40864 -17.12707 -16.89124 -16.84140 -16.37815 -16.21284 -15.86265 -15.28177 -15.06751 -14.52641 -14.47158 -14.04312 -13.96790 -13.65649 -13.16558 -12.97719 -12.87962 -12.59065 -12.28578 -12.17864 -11.91418 -11.83229 -11.71842 -11.54771 -11.36631 -11.07663 -10.96404 -10.74794 -10.55727 -10.35729 -10.07732 -10.05122 -9.70038 -9.55795 -8.99821 -8.60676 -8.11623 -7.43339 -6.31418 -4.16177 1.28258 1.51026 2.78269 3.18574 3.23011 3.26366 3.62545 3.71131 4.01559 4.22371 4.45894 4.60315 4.72405 4.76096 4.84964 4.96004 5.00197 5.02032 5.12501 5.14447 5.22006 5.29062 5.32527 5.33854 5.45049 5.61677 5.77529 5.82735 5.89578 5.92411 6.14920 6.24418 6.27537 6.49694 6.56255 6.61663 6.75759 6.91055 7.28956 7.34027 7.56277 7.99543 8.28374 8.46597 9.09633 9.28130 9.91250 10.68353 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027932 B = 0.002598 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.185049 B =10775.442001 C =11300.436376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.086 3.914 3 N -0.430 5.430 4 C -0.306 4.306 5 H 0.087 0.913 6 C 0.041 3.959 7 N -0.877 5.877 8 Si 0.925 3.075 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.508 3.492 13 O -0.572 6.572 14 C -0.177 4.177 15 C -0.007 4.007 16 C -0.189 4.189 17 C 0.315 3.685 18 O -0.306 6.306 19 C 0.076 3.924 20 C -0.121 4.121 21 C 0.066 3.934 22 O -0.392 6.392 23 C 0.032 3.968 24 N -0.541 5.541 25 C 0.153 3.847 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.118 0.882 31 H 0.270 0.730 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 -9.516 -15.536 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.038 4.038 3 N -0.148 5.148 4 C -0.434 4.434 5 H 0.105 0.895 6 C -0.163 4.163 7 N -0.514 5.514 8 Si 0.752 3.248 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.196 1.196 12 C 0.295 3.705 13 O -0.455 6.455 14 C -0.183 4.183 15 C -0.033 4.033 16 C -0.210 4.210 17 C 0.136 3.864 18 O -0.213 6.213 19 C 0.000 4.000 20 C -0.158 4.158 21 C -0.011 4.011 22 O -0.311 6.311 23 C -0.065 4.065 24 N -0.265 5.265 25 C -0.003 4.003 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.215 -9.582 -15.949 19.617 hybrid contribution 0.271 0.568 1.261 1.409 sum -5.944 -9.015 -14.689 18.230 Atomic orbital electron populations 1.22242 0.97964 0.99803 1.01931 1.21833 0.92142 0.85727 1.04090 1.43327 1.54492 1.11855 1.05129 1.19294 1.36916 1.00388 0.86769 0.89529 1.25599 0.94310 0.96050 1.00332 1.69634 1.36122 1.14355 1.31302 0.86025 0.78666 0.79540 0.80599 1.19788 1.20918 1.19616 1.18157 0.81286 0.87514 0.83494 1.90643 1.52837 1.15882 1.86109 1.21252 0.95613 1.02192 0.99224 1.21147 0.97774 0.93222 0.91132 1.20656 0.97940 1.02591 0.99813 1.19854 0.90376 0.90125 0.86072 1.86123 1.36565 1.61316 1.37341 1.22355 0.85339 0.96037 0.96278 1.21405 0.97818 0.99909 0.96695 1.22322 0.97258 0.94902 0.86595 1.87854 1.35571 1.66834 1.40824 1.22756 0.87762 0.95849 1.00112 1.67320 1.27560 1.23086 1.08514 1.22919 0.98020 0.89313 0.90065 0.93181 0.92305 0.93564 0.93398 0.86425 0.91974 0.83794 0.84097 0.91318 0.91423 0.90071 0.90026 0.92759 0.92809 0.93951 0.89520 0.93914 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.12 37.16 0.34 -2.56 16 2 C 0.09 1.85 5.30 -4.04 -0.02 1.83 16 3 N -0.43 -10.73 2.48 -115.99 -0.29 -11.02 16 4 C -0.31 -8.26 8.73 -15.00 -0.13 -8.39 16 5 H 0.09 2.42 7.82 -52.48 -0.41 2.01 16 6 C 0.04 1.07 5.34 -17.45 -0.09 0.98 16 7 N -0.88 -23.08 11.08 55.50 0.62 -22.46 16 8 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 9 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 C 0.51 12.54 7.13 -12.49 -0.09 12.45 16 13 O -0.57 -16.05 17.06 5.26 0.09 -15.96 16 14 C -0.18 -3.57 4.72 -104.83 -0.49 -4.06 16 15 C -0.01 -0.12 9.87 -39.26 -0.39 -0.51 16 16 C -0.19 -2.91 9.97 -39.71 -0.40 -3.31 16 17 C 0.31 5.00 7.49 -16.95 -0.13 4.87 16 18 O -0.31 -4.28 10.10 -18.22 -0.18 -4.47 16 19 C 0.08 0.85 5.30 37.15 0.20 1.05 16 20 C -0.12 -1.13 5.95 -26.73 -0.16 -1.29 16 21 C 0.07 0.55 5.94 37.16 0.22 0.77 16 22 O -0.39 -3.76 10.70 -35.23 -0.38 -4.14 16 23 C 0.03 0.20 11.01 101.05 1.11 1.31 16 24 N -0.54 -9.01 9.19 -12.93 -0.12 -9.13 16 25 C 0.15 2.73 8.85 -17.10 -0.15 2.58 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.81 6.61 -51.93 -0.34 0.46 16 29 H 0.05 0.97 5.53 -51.93 -0.29 0.69 16 30 H 0.12 2.82 5.52 -51.93 -0.29 2.53 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.14 2.43 8.06 -52.48 -0.42 2.01 16 33 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.17 2.80 4.93 -52.49 -0.26 2.55 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -31.29 360.52 -6.25 -37.54 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.21 Total: 3.10 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.18 Total: 5.73 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.21 Total: -42.61 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.47 Total: -24.56 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.29 -6.25 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299730936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.325 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds