Wall clock time and date at job start Tue Mar 31 2020 10:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47083 * 2 1 4 4 C 1.46499 * 120.00140 * 85.02898 * 3 2 1 5 5 C 1.50706 * 109.46981 * 95.43757 * 4 3 2 6 6 H 1.07996 * 120.00113 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99663 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99814 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00170 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.46991 * 89.99914 * 9 7 5 11 11 H 1.48501 * 109.47013 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47055 * 329.99880 * 9 7 5 13 13 C 1.34782 * 120.00071 * 264.75170 * 3 2 1 14 14 O 1.21614 * 119.99723 * 5.57110 * 13 3 2 15 15 C 1.47421 * 119.99838 * 185.57765 * 13 3 2 16 16 C 1.36089 * 126.44569 * 175.15204 * 15 13 3 17 17 O 1.34256 * 106.94590 * 179.97438 * 16 15 13 18 18 C 1.34043 * 108.23113 * 359.97438 * 17 16 15 19 19 C 1.50699 * 125.38246 * 179.97438 * 18 17 16 20 20 C 1.53181 * 109.54287 * 59.57850 * 19 18 17 21 21 C 1.53096 * 109.16085 * 183.15630 * 20 19 18 22 22 O 1.42902 * 109.41513 * 57.61150 * 21 20 19 23 23 C 1.42901 * 114.09685 * 298.83839 * 22 21 20 24 24 C 1.53087 * 109.41299 * 61.16142 * 23 22 21 25 25 N 1.29944 * 109.23988 * 359.74704 * 18 17 16 26 26 H 1.09007 * 109.47044 * 59.99772 * 1 2 3 27 27 H 1.08990 * 109.47210 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46674 * 299.99698 * 1 2 3 29 29 H 1.09003 * 109.47121 * 240.00119 * 2 1 3 30 30 H 1.08995 * 109.47418 * 120.00359 * 2 1 3 31 31 H 1.08996 * 109.47408 * 215.43953 * 4 3 2 32 32 H 1.09001 * 109.46759 * 335.44558 * 4 3 2 33 33 H 0.97004 * 120.00083 * 179.97438 * 8 7 5 34 34 H 1.07996 * 126.52988 * 0.02562 * 16 15 13 35 35 H 1.08995 * 109.54812 * 179.85009 * 19 18 17 36 36 H 1.09000 * 109.52383 * 303.06239 * 20 19 18 37 37 H 1.09005 * 109.51731 * 63.25148 * 20 19 18 38 38 H 1.09000 * 109.47647 * 297.62499 * 21 20 19 39 39 H 1.09000 * 109.47772 * 177.59522 * 21 20 19 40 40 H 1.09000 * 109.48433 * 301.17715 * 23 22 21 41 41 H 1.08996 * 109.47926 * 181.14635 * 23 22 21 42 42 H 1.09006 * 109.51950 * 182.48120 * 24 23 22 43 43 H 1.08994 * 109.57731 * 62.32985 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1589 2.1085 1.2639 5 6 3.5800 1.9961 1.7528 6 1 4.3059 1.4391 1.1792 7 6 3.9533 2.6045 2.9324 8 7 5.1936 2.5069 3.3588 9 14 2.6974 3.5674 3.9250 10 1 2.0308 2.6601 4.8932 11 1 3.3814 4.6608 4.6613 12 1 1.6819 4.1469 3.0095 13 6 2.3437 1.9810 -1.1623 14 8 2.1370 1.4136 -2.2180 15 6 2.9501 3.3247 -1.1539 16 6 3.4118 4.0100 -2.2352 17 8 3.8790 5.1849 -1.7835 18 6 3.7078 5.2213 -0.4546 19 6 4.0987 6.3657 0.4446 20 6 3.3559 7.6337 0.0123 21 6 3.8180 8.8073 0.8801 22 8 5.2336 8.9596 0.7583 23 6 5.9823 7.8225 1.1926 24 6 5.6072 6.6094 0.3374 25 7 3.1471 4.1158 -0.0646 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.9099 3.1582 1.1087 32 1 1.4846 1.6809 2.0060 33 1 5.4563 2.9353 4.1886 34 1 3.4033 3.6734 -3.2613 35 1 3.8407 6.1240 1.4756 36 1 3.5755 7.8458 -1.0341 37 1 2.2829 7.4880 0.1380 38 1 3.5615 8.6124 1.9214 39 1 3.3242 9.7208 0.5488 40 1 5.7542 7.6147 2.2380 41 1 7.0477 8.0266 1.0865 42 1 6.1444 5.7312 0.6955 43 1 5.8725 6.7996 -0.7025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330437792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:39 Heat of formation + Delta-G solvation = -52.869904 kcal Electronic energy + Delta-G solvation = -26814.979835 eV Core-core repulsion = 23055.423161 eV Total energy + Delta-G solvation = -3759.556675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.96182 -39.31198 -38.97884 -35.38781 -34.56742 -34.13789 -32.52729 -31.17266 -30.65834 -29.46516 -27.54101 -25.45149 -24.28220 -23.61529 -22.63740 -21.82348 -21.35677 -20.16907 -18.63712 -17.04397 -16.92889 -16.35927 -16.26381 -16.02529 -15.90417 -15.47155 -14.81563 -14.67722 -14.44309 -14.02966 -13.82645 -13.68811 -13.22006 -13.05822 -12.83564 -12.46296 -12.44079 -12.12270 -11.91027 -11.68489 -11.42577 -11.38419 -11.04537 -10.91588 -10.73196 -10.52863 -10.50346 -10.37785 -10.17240 -9.76999 -9.67169 -9.45078 -9.32541 -8.56450 -8.52401 -7.71709 -6.05377 -4.00095 1.57946 2.60746 2.97316 3.23369 3.31686 3.37351 3.69045 3.81241 3.96842 4.18823 4.41312 4.70409 4.74290 4.92098 5.03380 5.17847 5.25867 5.29390 5.30092 5.42197 5.51159 5.56106 5.61751 5.67933 5.70794 5.78719 5.80223 5.91910 6.02325 6.07221 6.12467 6.17620 6.25884 6.30306 6.46576 6.56414 6.59824 7.08690 7.11719 7.45130 7.64972 8.04556 8.16671 8.52169 8.82577 8.97697 9.56661 11.08228 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.005943 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.347504 B = 4710.116876 C = 6034.028364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.573 5.573 4 C 0.199 3.801 5 C -0.501 4.501 6 H 0.069 0.931 7 C 0.080 3.920 8 N -0.902 5.902 9 Si 0.864 3.136 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.260 1.260 13 C 0.599 3.401 14 O -0.570 6.570 15 C -0.047 4.047 16 C -0.014 4.014 17 O -0.202 6.202 18 C 0.180 3.820 19 C 0.013 3.987 20 C -0.152 4.152 21 C 0.063 3.937 22 O -0.384 6.384 23 C 0.063 3.937 24 C -0.152 4.152 25 N -0.394 5.394 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.020 0.980 33 H 0.261 0.739 34 H 0.223 0.777 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 9.371 -5.480 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.302 5.302 4 C 0.079 3.921 5 C -0.540 4.540 6 H 0.087 0.913 7 C -0.121 4.121 8 N -0.542 5.542 9 Si 0.691 3.309 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.185 1.185 13 C 0.386 3.614 14 O -0.452 6.452 15 C -0.168 4.168 16 C -0.087 4.087 17 O -0.089 6.089 18 C -0.029 4.029 19 C -0.006 4.006 20 C -0.191 4.191 21 C -0.014 4.014 22 O -0.303 6.303 23 C -0.014 4.014 24 C -0.190 4.190 25 N -0.122 5.122 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.239 0.761 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.852 9.151 -5.271 11.241 hybrid contribution -0.403 0.106 0.177 0.452 sum -4.254 9.257 -5.094 11.391 Atomic orbital electron populations 1.22116 0.96609 1.01451 1.01992 1.21353 0.93596 0.83117 1.02978 1.47842 1.61160 1.13435 1.07736 1.20237 0.98046 0.93816 0.80037 1.21135 0.93728 1.32516 1.06643 0.91326 1.24678 0.94789 0.95628 0.97035 1.69910 1.16844 1.45050 1.22380 0.87034 0.82580 0.80666 0.80625 1.20553 1.21228 1.18460 1.16792 0.77579 0.83188 0.83808 1.90710 1.57474 1.65887 1.31113 1.21739 1.07694 0.98085 0.89296 1.25053 0.99547 0.83542 1.00593 1.84277 1.63780 1.35672 1.25123 1.26171 1.00374 0.97177 0.79170 1.19681 0.96099 0.87864 0.96989 1.22314 1.00903 0.94160 1.01678 1.22566 0.81753 0.98216 0.98870 1.87914 1.17383 1.38759 1.86249 1.22597 0.96480 0.85063 0.97229 1.22282 0.94424 1.00087 1.02223 1.71406 1.13009 1.00210 1.27589 0.92705 0.92116 0.92634 0.90549 0.90226 0.91442 0.96174 0.92907 0.76080 0.86847 0.90240 0.90152 0.92726 0.88517 0.92518 0.88322 0.89231 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.24 37.16 0.38 -2.13 16 2 C 0.11 2.07 6.12 -4.04 -0.02 2.04 16 3 N -0.57 -12.45 2.47 -176.33 -0.44 -12.88 16 4 C 0.20 4.69 3.84 -5.19 -0.02 4.67 16 5 C -0.50 -13.58 8.56 -34.44 -0.29 -13.87 16 6 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 7 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 8 N -0.90 -26.34 13.96 55.43 0.77 -25.57 16 9 Si 0.86 20.35 27.47 -169.99 -4.67 15.68 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 13 C 0.60 13.12 7.61 -12.52 -0.10 13.02 16 14 O -0.57 -12.75 16.45 5.27 0.09 -12.66 16 15 C -0.05 -0.98 6.58 -83.03 -0.55 -1.52 16 16 C -0.01 -0.23 11.95 29.96 0.36 0.13 16 17 O -0.20 -3.36 10.73 6.53 0.07 -3.29 16 18 C 0.18 3.23 6.82 -13.08 -0.09 3.14 16 19 C 0.01 0.19 2.75 -91.58 -0.25 -0.06 16 20 C -0.15 -1.81 5.41 -26.59 -0.14 -1.96 16 21 C 0.06 0.67 6.84 37.21 0.25 0.93 16 22 O -0.38 -4.81 10.77 -35.23 -0.38 -5.18 16 23 C 0.06 0.75 6.84 37.20 0.25 1.01 16 24 C -0.15 -2.08 5.40 -26.59 -0.14 -2.23 16 25 N -0.39 -8.37 6.98 -7.66 -0.05 -8.43 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.39 7.35 -51.93 -0.38 1.01 16 30 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 31 H 0.07 1.62 4.66 -51.93 -0.24 1.38 16 32 H 0.02 0.46 7.46 -51.93 -0.39 0.08 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.22 2.94 8.06 -52.49 -0.42 2.52 16 35 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -32.27 353.70 -6.25 -38.53 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.52 Total: 3.22 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.46 Total: 5.26 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.28 Total: -46.88 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.22 Total: -21.13 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.27 -6.25 -38.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330437792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.345 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds