Wall clock time and date at job start Tue Mar 31 2020 09:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47128 * 2 1 4 4 C 1.50708 * 109.46990 * 240.00627 * 2 1 3 5 5 H 1.07997 * 119.99913 * 240.00040 * 4 2 1 6 6 C 1.37875 * 119.99905 * 60.00098 * 4 2 1 7 7 N 1.31511 * 120.00315 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99658 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46967 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47196 * 299.99429 * 8 6 4 11 11 H 1.48498 * 109.47417 * 59.99784 * 8 6 4 12 12 N 1.46892 * 109.47197 * 120.00685 * 2 1 3 13 13 C 1.46899 * 111.00170 * 307.87094 * 12 2 1 14 14 C 1.46906 * 111.00121 * 183.91693 * 12 2 1 15 15 H 1.09009 * 109.39962 * 313.22502 * 14 12 2 16 16 C 1.53067 * 109.40398 * 193.39753 * 14 12 2 17 17 C 1.53341 * 108.42610 * 190.96852 * 16 14 12 18 18 C 1.52921 * 108.67442 * 67.53207 * 17 16 14 19 19 N 1.45752 * 110.48551 * 309.24607 * 18 17 16 20 20 C 1.46503 * 117.94756 * 199.06826 * 19 18 17 21 21 C 1.53007 * 109.46392 * 90.00105 * 20 19 18 22 22 F 1.39899 * 109.47253 * 60.00464 * 21 20 19 23 23 F 1.39902 * 109.47016 * 180.02562 * 21 20 19 24 24 F 1.39896 * 109.47301 * 300.00024 * 21 20 19 25 25 C 1.33354 * 124.10990 * 19.07923 * 19 18 17 26 26 O 1.21283 * 118.25014 * 177.77630 * 25 19 18 27 27 H 1.08992 * 109.47160 * 295.87211 * 1 2 3 28 28 H 1.09004 * 109.47344 * 55.87582 * 1 2 3 29 29 H 1.09005 * 109.47341 * 175.86858 * 1 2 3 30 30 H 0.97002 * 120.00585 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47222 * 59.99848 * 13 12 2 32 32 H 1.08998 * 109.47657 * 180.02562 * 13 12 2 33 33 H 1.09005 * 109.46519 * 300.00071 * 13 12 2 34 34 H 1.08998 * 109.67188 * 310.70893 * 16 14 12 35 35 H 1.09005 * 109.67279 * 71.19884 * 16 14 12 36 36 H 1.09001 * 109.60072 * 187.28450 * 17 16 14 37 37 H 1.09000 * 109.60532 * 307.77508 * 17 16 14 38 38 H 1.09003 * 109.30122 * 69.55682 * 18 17 16 39 39 H 1.08989 * 109.30198 * 189.14013 * 18 17 16 40 40 H 1.09000 * 109.47536 * 209.99668 * 20 19 18 41 41 H 1.08996 * 109.47129 * 330.00649 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 1.8259 -0.4201 -5.2206 10 1 3.8063 -1.1205 -4.0084 11 1 1.8258 -2.5199 -4.0080 12 7 2.0196 -0.6926 1.1993 13 6 1.4014 -0.1437 2.4135 14 6 3.4851 -0.6316 1.2810 15 1 3.9128 -0.8885 0.3118 16 6 3.9776 -1.6274 2.3340 17 6 5.4633 -1.3564 2.6000 18 6 5.5978 0.0041 3.2851 19 7 4.8689 1.0240 2.5415 20 6 5.2153 2.4272 2.7807 21 6 6.3204 2.8519 1.8114 22 9 5.8702 2.7005 0.4955 23 9 6.6517 4.1918 2.0401 24 9 7.4502 2.0518 2.0127 25 6 3.9063 0.7599 1.6572 26 8 3.3407 1.6935 1.1285 27 1 -0.3633 0.4484 0.9246 28 1 -0.3634 0.5765 -0.8507 29 1 -0.3634 -1.0250 -0.0740 30 1 0.7080 1.1612 -3.4843 31 1 0.3197 -0.2649 2.3571 32 1 1.7817 -0.6740 3.2866 33 1 1.6444 0.9156 2.4979 34 1 3.4101 -1.4976 3.2555 35 1 3.8500 -2.6450 1.9648 36 1 5.8663 -2.1340 3.2488 37 1 6.0079 -1.3459 1.6559 38 1 5.1963 -0.0604 4.2964 39 1 6.6509 0.2809 3.3326 40 1 4.3351 3.0507 2.6238 41 1 5.5661 2.5452 3.8059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336802533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:39 Heat of formation + Delta-G solvation = -168.292494 kcal Electronic energy + Delta-G solvation = -28197.146125 eV Core-core repulsion = 23890.727611 eV Total energy + Delta-G solvation = -4306.418514 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.98843 -47.57483 -47.38643 -40.62308 -36.89685 -36.25763 -33.72116 -32.32351 -29.67241 -28.95715 -27.95777 -26.08618 -24.39487 -23.81819 -22.70388 -21.80872 -19.50240 -18.82687 -18.39862 -18.09623 -17.66794 -16.80249 -16.22414 -15.71908 -15.47619 -14.84370 -14.44423 -14.40562 -14.15475 -14.00868 -13.90142 -13.71449 -13.60432 -13.57736 -13.37519 -13.23126 -12.76326 -12.46195 -12.27375 -11.99668 -11.81899 -11.56557 -11.22622 -11.17093 -10.91124 -10.82818 -10.63058 -10.31845 -10.07018 -9.97380 -9.71459 -9.49334 -8.85698 -8.80887 -8.32409 -7.06935 -5.88723 -3.92239 2.58963 2.86716 3.13521 3.38085 3.42436 3.44204 3.87388 4.05122 4.30781 4.47585 4.67633 4.73067 4.78230 5.00863 5.07272 5.13030 5.35418 5.39945 5.43756 5.59998 5.65546 5.85589 5.96242 6.05519 6.14464 6.22528 6.38142 6.46457 6.52575 6.94908 7.12898 7.19176 7.46341 7.68847 7.73045 7.90133 8.26904 8.36486 8.52682 8.65982 9.12702 9.70391 11.18351 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.005649 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.313633 B = 4955.464804 C = 5606.905714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.190 3.810 3 H 0.050 0.950 4 C -0.503 4.503 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.288 1.288 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.507 5.507 13 C 0.012 3.988 14 C 0.085 3.915 15 H 0.125 0.875 16 C -0.116 4.116 17 C -0.134 4.134 18 C 0.112 3.888 19 N -0.611 5.611 20 C 0.067 3.933 21 C 0.433 3.567 22 F -0.167 7.167 23 F -0.187 7.187 24 F -0.188 7.188 25 C 0.490 3.510 26 O -0.508 6.508 27 H 0.008 0.992 28 H 0.082 0.918 29 H 0.030 0.970 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.704 -0.342 15.118 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.085 3.915 3 H 0.067 0.933 4 C -0.542 4.542 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.214 1.214 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.230 5.230 13 C -0.137 4.137 14 C -0.028 4.028 15 H 0.143 0.857 16 C -0.154 4.154 17 C -0.173 4.173 18 C -0.011 4.011 19 N -0.348 5.348 20 C -0.060 4.060 21 C 0.377 3.623 22 F -0.149 7.149 23 F -0.169 7.169 24 F -0.170 7.170 25 C 0.278 3.722 26 O -0.381 6.381 27 H 0.027 0.973 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.146 0.854 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.110 -0.259 14.572 17.738 hybrid contribution 0.845 0.553 -0.940 1.380 sum 10.955 0.294 13.632 17.491 Atomic orbital electron populations 1.21893 0.98078 0.99787 0.99304 1.19739 0.91958 0.95155 0.84690 0.93277 1.21021 1.31239 1.11900 0.89997 0.92456 1.24877 0.95347 0.95018 0.98781 1.69894 1.36830 1.22851 1.23250 0.86666 0.79073 0.79699 0.82548 1.21416 1.20451 1.20321 1.62627 1.00651 1.55762 1.03946 1.22524 1.00870 0.97189 0.93071 1.21830 0.92162 0.87768 1.01024 0.85727 1.21777 0.93909 1.00551 0.99164 1.21875 0.98117 0.95454 1.01814 1.21529 0.96445 0.88145 0.94962 1.47791 1.38487 1.04509 1.43987 1.22503 0.97711 0.87907 0.97860 1.21380 0.83480 0.74581 0.82902 1.93294 1.88662 1.95135 1.37784 1.93165 1.93474 1.35652 1.94577 1.93136 1.55074 1.73784 1.94989 1.22358 0.77989 0.94578 0.77254 1.90744 1.51647 1.45583 1.50088 0.97289 0.89900 0.95047 0.93090 0.91077 0.93241 0.95989 0.91317 0.89941 0.89675 0.90717 0.91627 0.90599 0.85369 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.56 37.16 0.32 -3.04 16 2 C 0.19 4.91 1.86 -68.87 -0.13 4.79 16 3 H 0.05 1.46 5.38 -51.93 -0.28 1.18 16 4 C -0.50 -14.02 7.76 -34.44 -0.27 -14.29 16 5 H 0.06 1.56 7.07 -52.49 -0.37 1.19 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -26.42 11.36 55.43 0.63 -25.79 16 8 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.51 -10.75 4.54 -229.95 -1.04 -11.80 16 13 C 0.01 0.22 8.28 60.06 0.50 0.72 16 14 C 0.08 1.57 2.30 -69.08 -0.16 1.41 16 15 H 0.13 2.64 6.44 -51.92 -0.33 2.30 16 16 C -0.12 -1.53 5.48 -26.52 -0.15 -1.68 16 17 C -0.13 -1.37 6.02 -26.60 -0.16 -1.53 16 18 C 0.11 1.10 6.19 -4.49 -0.03 1.07 16 19 N -0.61 -8.40 2.75 -174.96 -0.48 -8.88 16 20 C 0.07 0.81 5.32 -4.04 -0.02 0.79 16 21 C 0.43 5.99 3.29 37.16 0.12 6.12 16 22 F -0.17 -3.06 16.08 2.25 0.04 -3.03 16 23 F -0.19 -2.48 17.32 2.25 0.04 -2.44 16 24 F -0.19 -2.44 15.89 2.25 0.04 -2.41 16 25 C 0.49 9.02 5.34 -11.87 -0.06 8.96 16 26 O -0.51 -11.58 11.44 5.55 0.06 -11.52 16 27 H 0.01 0.19 6.07 -51.93 -0.32 -0.12 16 28 H 0.08 2.31 6.19 -51.93 -0.32 1.98 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.07 1.32 6.11 -51.93 -0.32 1.00 16 32 H 0.05 0.76 6.28 -51.93 -0.33 0.43 16 33 H 0.02 0.43 6.38 -51.93 -0.33 0.10 16 34 H 0.07 0.86 6.23 -51.93 -0.32 0.53 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.65 6.86 -51.94 -0.36 0.29 16 40 H 0.13 1.72 7.13 -51.93 -0.37 1.35 16 41 H 0.12 0.91 8.01 -51.93 -0.42 0.49 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -32.65 323.09 -6.31 -38.96 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.31 Total: 0.15 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.13 Total: 4.97 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.90 Total: -46.46 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.06 Total: -11.52 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 0.11 Total: -7.88 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.65 -6.31 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336802533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.332 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds