Wall clock time and date at job start Tue Mar 31 2020 09:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47478 * 2 1 4 4 C 1.50702 * 109.47355 * 120.00345 * 2 1 3 5 5 H 1.07997 * 120.00113 * 120.00210 * 4 2 1 6 6 C 1.37883 * 119.99643 * 299.99795 * 4 2 1 7 7 N 1.31517 * 119.99851 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00198 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47181 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.47461 * 210.00267 * 8 6 4 11 11 H 1.48502 * 109.47061 * 330.00085 * 8 6 4 12 12 N 1.46902 * 109.47248 * 239.99908 * 2 1 3 13 13 C 1.46903 * 110.99762 * 58.73677 * 12 2 1 14 14 C 1.46900 * 111.00360 * 182.68829 * 12 2 1 15 15 H 1.09002 * 109.39843 * 46.33448 * 14 12 2 16 16 C 1.53070 * 109.40097 * 166.16390 * 14 12 2 17 17 C 1.53345 * 108.42454 * 169.03479 * 16 14 12 18 18 C 1.52925 * 108.67235 * 292.46991 * 17 16 14 19 19 N 1.45755 * 110.48941 * 50.74851 * 18 17 16 20 20 C 1.46503 * 117.94370 * 160.92722 * 19 18 17 21 21 C 1.52995 * 109.47138 * 90.00261 * 20 19 18 22 22 F 1.39905 * 109.47060 * 60.00055 * 21 20 19 23 23 F 1.39903 * 109.47160 * 179.97438 * 21 20 19 24 24 F 1.39902 * 109.47250 * 300.00061 * 21 20 19 25 25 C 1.33233 * 124.07047 * 340.85626 * 19 18 17 26 26 O 1.21281 * 118.15676 * 182.29049 * 25 19 18 27 27 H 1.08998 * 109.47289 * 173.96465 * 1 2 3 28 28 H 1.09002 * 109.47299 * 293.96310 * 1 2 3 29 29 H 1.09000 * 109.47697 * 53.95903 * 1 2 3 30 30 H 0.96996 * 120.00184 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46853 * 60.00189 * 13 12 2 32 32 H 1.08992 * 109.47481 * 180.02562 * 13 12 2 33 33 H 1.08998 * 109.47433 * 300.00324 * 13 12 2 34 34 H 1.09000 * 109.66866 * 288.76348 * 16 14 12 35 35 H 1.08996 * 109.67484 * 49.26007 * 16 14 12 36 36 H 1.09004 * 109.60805 * 52.22094 * 17 16 14 37 37 H 1.08992 * 109.60474 * 172.54966 * 17 16 14 38 38 H 1.09000 * 109.30300 * 171.06977 * 18 17 16 39 39 H 1.09003 * 109.29712 * 290.44069 * 18 17 16 40 40 H 1.09000 * 109.46821 * 210.00759 * 20 19 18 41 41 H 1.09000 * 109.47143 * 330.00444 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8597 3.5566 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8745 2.6994 10 1 0.9773 1.9953 3.9071 11 1 0.8492 2.1773 1.4924 12 7 2.0196 -0.6925 -1.1994 13 6 1.5240 -0.0440 -2.4209 14 6 3.4867 -0.7681 -1.2017 15 1 3.8340 -1.0915 -0.2204 16 6 3.9423 -1.7759 -2.2600 17 6 5.4592 -1.6393 -2.4380 18 6 5.7575 -0.2787 -3.0692 19 7 5.0862 0.7842 -2.3316 20 6 5.5744 2.1545 -2.5052 21 6 4.8302 2.8178 -3.6658 22 9 3.4594 2.8429 -3.3873 23 9 5.2960 4.1266 -3.8312 24 9 5.0543 2.0907 -4.8398 25 6 4.0556 0.5870 -1.5105 26 8 3.5507 1.5553 -0.9830 27 1 -0.3634 -1.0219 -0.1080 28 1 -0.3634 0.4174 0.9391 29 1 -0.3634 0.6046 -0.8309 30 1 1.9033 -0.5281 4.4375 31 1 1.8688 0.9897 -2.4489 32 1 1.9010 -0.5769 -3.2937 33 1 0.4343 -0.0639 -2.4263 34 1 3.7009 -2.7869 -1.9318 35 1 3.4410 -1.5674 -3.2051 36 1 5.9491 -1.7070 -1.4666 37 1 5.8242 -2.4345 -3.0879 38 1 6.8332 -0.1031 -3.0553 39 1 5.4086 -0.2764 -4.1019 40 1 5.3998 2.7210 -1.5904 41 1 6.6424 2.1350 -2.7222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336802534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:43 Heat of formation + Delta-G solvation = -162.472156 kcal Electronic energy + Delta-G solvation = -28411.911199 eV Core-core repulsion = 24105.745073 eV Total energy + Delta-G solvation = -4306.166125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.07275 -47.64943 -47.48923 -40.70374 -37.07480 -36.31626 -33.79536 -32.33018 -30.27342 -29.05753 -28.35871 -26.19489 -24.30164 -23.84790 -22.83211 -21.91202 -19.64674 -18.82315 -18.53040 -18.40365 -17.46008 -17.06230 -16.32446 -15.96240 -15.64121 -14.96483 -14.52268 -14.45713 -14.24112 -14.03541 -13.96291 -13.82337 -13.69435 -13.64797 -13.41050 -13.14851 -13.06269 -12.60845 -12.40007 -12.34153 -12.07569 -11.68902 -11.61332 -11.23987 -11.17976 -10.91567 -10.60245 -10.41748 -10.16080 -10.06083 -9.62705 -9.41149 -8.96135 -8.88812 -8.49238 -7.30813 -6.01443 -3.98278 2.53097 2.79520 3.05944 3.34021 3.45752 3.52731 3.80279 3.97703 4.23181 4.49116 4.54694 4.68049 4.76017 4.93537 5.03619 5.06587 5.28299 5.33965 5.39484 5.54508 5.63064 5.79542 5.92022 6.02263 6.09116 6.16540 6.33387 6.38074 6.40243 6.53100 6.61169 6.73971 6.98232 7.38577 7.41928 7.65845 7.90520 8.04014 8.41456 8.67470 9.00469 9.62348 11.11081 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.005646 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.154395 B = 4958.346099 C = 5530.359045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 H 0.043 0.957 4 C -0.502 4.502 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.903 5.903 8 Si 0.884 3.116 9 H -0.280 1.280 10 H -0.299 1.299 11 H -0.264 1.264 12 N -0.497 5.497 13 C 0.007 3.993 14 C 0.082 3.918 15 H 0.136 0.864 16 C -0.116 4.116 17 C -0.134 4.134 18 C 0.112 3.888 19 N -0.609 5.609 20 C 0.067 3.933 21 C 0.433 3.567 22 F -0.171 7.171 23 F -0.187 7.187 24 F -0.188 7.188 25 C 0.493 3.507 26 O -0.515 6.515 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.029 0.971 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 2.171 -16.449 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.541 5.541 8 Si 0.714 3.286 9 H -0.208 1.208 10 H -0.227 1.227 11 H -0.188 1.188 12 N -0.219 5.219 13 C -0.141 4.141 14 C -0.030 4.030 15 H 0.154 0.846 16 C -0.154 4.154 17 C -0.172 4.172 18 C -0.010 4.010 19 N -0.345 5.345 20 C -0.060 4.060 21 C 0.377 3.623 22 F -0.152 7.152 23 F -0.168 7.168 24 F -0.169 7.169 25 C 0.281 3.719 26 O -0.389 6.389 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.147 0.853 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.000 2.171 -15.937 18.430 hybrid contribution -0.417 1.815 -0.113 1.866 sum 8.582 3.986 -16.050 18.632 Atomic orbital electron populations 1.22191 0.98842 1.00680 0.98529 1.20094 0.91146 0.95542 0.87695 0.93938 1.20911 1.31891 1.13074 0.88175 0.90314 1.24855 0.95833 0.96471 0.95777 1.69878 1.46054 1.40379 0.97817 0.86902 0.80406 0.84170 0.77087 1.20774 1.22678 1.18844 1.62437 1.04074 1.52329 1.03067 1.22577 1.01203 0.97297 0.93063 1.21930 0.90091 0.88691 1.02277 0.84633 1.21772 0.93855 1.00741 0.99080 1.21874 0.97609 0.95438 1.02263 1.21533 0.96949 0.87088 0.95449 1.47711 1.34424 1.05575 1.46762 1.22561 0.98988 0.86956 0.97489 1.21393 0.79380 0.76820 0.84703 1.93257 1.32366 1.96156 1.93414 1.93169 1.88577 1.38983 1.96091 1.93150 1.94534 1.77453 1.51787 1.22256 0.78405 0.94347 0.76906 1.90716 1.56803 1.42060 1.49298 0.92453 0.93839 0.95509 0.92764 0.95204 0.92760 0.91378 0.89722 0.91439 0.90481 0.89597 0.90709 0.91574 0.85349 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.22 37.15 0.31 -3.05 16 2 C 0.16 3.98 1.35 -68.87 -0.09 3.88 16 3 H 0.04 1.16 4.68 -51.93 -0.24 0.92 16 4 C -0.50 -14.04 8.32 -34.44 -0.29 -14.33 16 5 H 0.08 2.32 6.83 -52.49 -0.36 1.96 16 6 C 0.07 2.10 5.45 -17.82 -0.10 2.01 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 8 Si 0.88 23.05 24.42 -169.99 -4.15 18.90 16 9 H -0.28 -7.08 6.82 56.52 0.39 -6.70 16 10 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 11 H -0.26 -6.90 6.53 56.52 0.37 -6.53 16 12 N -0.50 -10.24 4.54 -229.95 -1.04 -11.28 16 13 C 0.01 0.13 8.46 60.07 0.51 0.64 16 14 C 0.08 1.50 2.27 -69.08 -0.16 1.34 16 15 H 0.14 2.84 5.94 -51.93 -0.31 2.54 16 16 C -0.12 -1.53 5.48 -26.52 -0.15 -1.68 16 17 C -0.13 -1.31 6.02 -26.59 -0.16 -1.47 16 18 C 0.11 1.08 6.02 -4.48 -0.03 1.05 16 19 N -0.61 -8.12 2.75 -174.99 -0.48 -8.60 16 20 C 0.07 0.78 5.32 -4.04 -0.02 0.75 16 21 C 0.43 5.60 3.29 37.16 0.12 5.73 16 22 F -0.17 -2.82 15.67 2.25 0.04 -2.79 16 23 F -0.19 -2.34 17.32 2.25 0.04 -2.30 16 24 F -0.19 -2.29 16.30 2.25 0.04 -2.25 16 25 C 0.49 8.80 5.40 -11.93 -0.06 8.74 16 26 O -0.52 -11.29 11.27 5.56 0.06 -11.22 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.04 1.06 3.22 -51.93 -0.17 0.89 16 29 H 0.03 0.55 6.73 -51.93 -0.35 0.20 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.03 0.59 6.12 -51.93 -0.32 0.27 16 32 H 0.05 0.84 6.30 -51.93 -0.33 0.52 16 33 H 0.07 1.20 6.42 -51.93 -0.33 0.87 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.86 6.26 -51.93 -0.32 0.54 16 36 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.52 7.92 -51.93 -0.41 0.11 16 39 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 40 H 0.13 1.67 7.20 -51.93 -0.37 1.30 16 41 H 0.12 0.89 7.86 -51.93 -0.41 0.48 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -33.19 316.18 -5.27 -38.46 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.19 Total: -0.43 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.12 Total: 3.62 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.75 Total: -46.75 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.06 Total: -11.22 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.11 Total: -7.34 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.15 Total: 18.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.19 -5.27 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336802534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.011 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds