Wall clock time and date at job start Tue Mar 31 2020 09:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46984 * 2 1 4 4 C 1.50700 * 109.47110 * 239.99703 * 2 1 3 5 5 H 1.07991 * 119.99960 * 240.00587 * 4 2 1 6 6 C 1.37877 * 119.99918 * 60.00160 * 4 2 1 7 7 N 1.31515 * 119.99976 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99886 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46955 * 89.99903 * 8 6 4 10 10 H 1.48497 * 109.46825 * 209.99875 * 8 6 4 11 11 H 1.48499 * 109.46822 * 329.99701 * 8 6 4 12 12 N 1.46896 * 109.46612 * 119.99505 * 2 1 3 13 13 C 1.46905 * 110.99460 * 180.27392 * 12 2 1 14 14 C 1.46902 * 111.00486 * 304.22764 * 12 2 1 15 15 H 1.08992 * 109.32520 * 47.41867 * 14 12 2 16 16 C 1.53065 * 109.39892 * 167.20455 * 14 12 2 17 17 C 1.53347 * 108.42132 * 169.03083 * 16 14 12 18 18 C 1.53107 * 108.53013 * 292.30599 * 17 16 14 19 19 N 1.45757 * 110.38118 * 51.11604 * 18 17 16 20 20 C 1.46495 * 117.94329 * 160.74613 * 19 18 17 21 21 C 1.52997 * 109.47191 * 269.73641 * 20 19 18 22 22 F 1.39901 * 109.47103 * 59.99871 * 21 20 19 23 23 F 1.39901 * 109.47249 * 300.00109 * 21 20 19 24 24 F 1.39900 * 109.47580 * 180.02562 * 21 20 19 25 25 C 1.33351 * 124.10702 * 340.46361 * 19 18 17 26 26 O 1.21284 * 118.24760 * 182.48179 * 25 19 18 27 27 H 1.08997 * 109.47105 * 300.00568 * 1 2 3 28 28 H 1.09007 * 109.46628 * 59.99960 * 1 2 3 29 29 H 1.08990 * 109.47279 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99610 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.46765 * 183.95819 * 13 12 2 32 32 H 1.09002 * 109.47058 * 303.95036 * 13 12 2 33 33 H 1.08995 * 109.47303 * 63.96135 * 13 12 2 34 34 H 1.08999 * 109.67422 * 288.75898 * 16 14 12 35 35 H 1.08998 * 109.67960 * 49.26481 * 16 14 12 36 36 H 1.08993 * 109.60392 * 52.22472 * 17 16 14 37 37 H 1.09005 * 109.60064 * 172.55266 * 17 16 14 38 38 H 1.09003 * 109.49767 * 290.74304 * 18 17 16 39 39 H 1.08997 * 109.20676 * 171.30134 * 18 17 16 40 40 H 1.08998 * 109.47024 * 149.73780 * 20 19 18 41 41 H 1.09003 * 109.47548 * 29.73851 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1206 -4.0079 9 1 1.3428 -2.1619 -4.4117 10 1 2.4867 -0.1416 -5.1122 11 1 3.6294 -1.7585 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 3.4881 -0.7063 1.2367 14 6 1.4678 -0.0871 2.4190 15 1 0.3932 0.0498 2.2992 16 6 1.7332 -1.0110 3.6101 17 6 1.4024 -0.2479 4.8984 18 6 2.4232 0.8800 5.0717 19 7 2.5174 1.6713 3.8512 20 6 3.0926 3.0151 3.9470 21 6 1.9798 4.0276 4.2251 22 9 1.3459 3.7047 5.4298 23 9 1.0467 3.9930 3.1833 24 9 2.5290 5.3111 4.3161 25 6 2.1177 1.2466 2.6520 26 8 2.2879 1.9765 1.6985 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 0.7083 1.1607 -3.4845 31 1 3.8243 -1.2850 2.0971 32 1 3.8705 -1.1597 0.3222 33 1 3.8592 0.3153 1.3186 34 1 1.1018 -1.8963 3.5356 35 1 2.7820 -1.3078 3.6179 36 1 0.3983 0.1703 4.8282 37 1 1.4573 -0.9265 5.7497 38 1 3.4001 0.4545 5.3015 39 1 2.1110 1.5229 5.8946 40 1 3.5865 3.2667 3.0085 41 1 3.8196 3.0422 4.7587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336802536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:50 Heat of formation + Delta-G solvation = -167.737881 kcal Electronic energy + Delta-G solvation = -28051.843504 eV Core-core repulsion = 23745.449040 eV Total energy + Delta-G solvation = -4306.394464 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.05341 -47.63389 -47.46160 -40.71051 -36.91777 -36.32759 -33.74207 -32.27206 -29.46523 -29.04435 -28.60203 -25.59712 -24.42295 -23.84466 -22.78534 -21.89509 -19.81282 -18.85861 -18.45972 -18.14244 -17.72314 -16.52951 -16.31336 -15.92006 -15.42682 -14.89147 -14.50261 -14.48108 -14.18686 -14.07966 -13.97041 -13.81295 -13.67814 -13.65211 -13.42631 -13.21937 -12.80438 -12.47061 -12.28227 -11.98648 -11.91206 -11.34004 -11.28770 -11.19760 -11.14169 -10.88879 -10.56399 -10.28593 -10.02954 -9.98385 -9.79287 -9.53832 -8.90305 -8.82571 -8.32705 -7.10145 -5.89514 -3.93635 2.52602 2.79480 3.05729 3.36281 3.42340 3.45111 3.81457 3.99501 4.24846 4.45024 4.63075 4.65962 4.73005 4.93151 5.00861 5.09948 5.31625 5.34333 5.41877 5.55049 5.56293 5.79950 5.84351 6.08782 6.09312 6.26421 6.32806 6.40384 6.76310 6.91212 7.13986 7.20402 7.37385 7.63949 7.81486 7.90784 8.18189 8.37768 8.47755 8.64697 9.12822 9.69080 11.17041 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.004724 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.565315 B = 5926.099231 C = 6689.647668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.193 3.807 3 H 0.046 0.954 4 C -0.501 4.501 5 H 0.059 0.941 6 C 0.058 3.942 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.506 5.506 13 C 0.027 3.973 14 C 0.069 3.931 15 H 0.116 0.884 16 C -0.115 4.115 17 C -0.134 4.134 18 C 0.111 3.889 19 N -0.610 5.610 20 C 0.066 3.934 21 C 0.434 3.566 22 F -0.188 7.188 23 F -0.170 7.170 24 F -0.186 7.186 25 C 0.488 3.512 26 O -0.507 6.507 27 H 0.004 0.996 28 H 0.086 0.914 29 H 0.030 0.970 30 H 0.259 0.741 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 1.633 19.229 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.088 3.912 3 H 0.063 0.937 4 C -0.540 4.540 5 H 0.078 0.922 6 C -0.143 4.143 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.229 5.229 13 C -0.122 4.122 14 C -0.044 4.044 15 H 0.134 0.866 16 C -0.153 4.153 17 C -0.172 4.172 18 C -0.011 4.011 19 N -0.347 5.347 20 C -0.061 4.061 21 C 0.378 3.622 22 F -0.170 7.170 23 F -0.151 7.151 24 F -0.167 7.167 25 C 0.275 3.725 26 O -0.380 6.380 27 H 0.023 0.977 28 H 0.105 0.895 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.147 0.853 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.185 1.608 18.466 18.808 hybrid contribution 0.372 0.694 -0.655 1.024 sum 3.557 2.302 17.812 18.309 Atomic orbital electron populations 1.21875 0.98262 0.99043 0.99842 1.19671 0.91978 0.94880 0.84665 0.93656 1.21105 1.31026 1.12004 0.89883 0.92237 1.24909 0.95422 0.95081 0.98854 1.69918 1.36927 1.22890 1.23157 0.86557 0.79109 0.79248 0.82785 1.20785 1.21426 1.20067 1.62674 1.07327 1.51598 1.01284 1.22356 0.88997 0.99181 1.01647 1.22055 1.01474 0.87376 0.93455 0.86622 1.21758 1.02983 0.98687 0.91897 1.21905 0.99175 0.96875 0.99242 1.21564 1.00043 0.93590 0.85943 1.47748 1.63705 1.13744 1.09459 1.22519 0.92808 0.82964 1.07780 1.21362 0.84850 0.81792 0.74223 1.93139 1.84289 1.92452 1.47088 1.93274 1.67806 1.96320 1.57707 1.93171 1.85488 1.42032 1.96052 1.22335 0.78125 0.90607 0.81416 1.90786 1.53289 1.55095 1.38792 0.97699 0.89514 0.95052 0.93123 0.93786 0.90133 0.96210 0.89964 0.91001 0.90860 0.89602 0.91507 0.90555 0.85255 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.65 37.16 0.32 -3.03 16 2 C 0.19 5.02 1.71 -68.86 -0.12 4.90 16 3 H 0.05 1.35 5.61 -51.93 -0.29 1.06 16 4 C -0.50 -14.05 7.88 -34.44 -0.27 -14.33 16 5 H 0.06 1.65 6.71 -52.49 -0.35 1.30 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -26.41 11.32 55.43 0.63 -25.78 16 8 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.51 -10.77 4.55 -229.95 -1.05 -11.81 16 13 C 0.03 0.52 8.70 60.07 0.52 1.05 16 14 C 0.07 1.21 2.25 -69.08 -0.16 1.05 16 15 H 0.12 2.16 5.57 -51.93 -0.29 1.87 16 16 C -0.12 -1.44 5.47 -26.52 -0.15 -1.59 16 17 C -0.13 -1.25 6.03 -26.50 -0.16 -1.41 16 18 C 0.11 1.04 6.18 -4.39 -0.03 1.01 16 19 N -0.61 -8.07 2.75 -174.85 -0.48 -8.55 16 20 C 0.07 0.77 5.32 -4.05 -0.02 0.75 16 21 C 0.43 5.71 3.29 37.16 0.12 5.83 16 22 F -0.19 -2.30 15.92 2.25 0.04 -2.26 16 23 F -0.17 -2.91 16.08 2.25 0.04 -2.88 16 24 F -0.19 -2.37 17.32 2.25 0.04 -2.33 16 25 C 0.49 8.66 5.28 -11.87 -0.06 8.60 16 26 O -0.51 -11.33 11.53 5.55 0.06 -11.26 16 27 H 0.00 0.10 6.08 -51.93 -0.32 -0.22 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.04 0.71 6.39 -51.93 -0.33 0.38 16 32 H 0.08 1.72 6.36 -51.93 -0.33 1.39 16 33 H 0.02 0.41 6.27 -51.93 -0.33 0.08 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.89 6.26 -51.93 -0.32 0.56 16 36 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.60 6.90 -51.93 -0.36 0.25 16 40 H 0.13 1.72 7.13 -51.93 -0.37 1.35 16 41 H 0.12 0.89 8.01 -51.93 -0.42 0.47 16 LS Contribution 322.74 15.07 4.86 4.86 Total: -1.00 -32.71 322.74 -6.24 -38.95 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.27 Total: -0.17 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.09 Total: 4.41 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.90 Total: -46.14 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.06 Total: -11.26 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.11 Total: -7.47 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.71 -6.24 -38.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336802536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.792 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds