Wall clock time and date at job start Tue Mar 31 2020 09:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47432 * 2 1 4 4 C 1.50698 * 109.47248 * 119.99823 * 2 1 3 5 5 H 1.07998 * 120.00126 * 114.78448 * 4 2 1 6 6 C 1.37883 * 119.99998 * 294.78423 * 4 2 1 7 7 N 1.31507 * 120.00085 * 163.91469 * 6 4 2 8 8 Si 1.86803 * 119.99695 * 344.18733 * 6 4 2 9 9 H 1.48495 * 109.46846 * 269.72156 * 8 6 4 10 10 H 1.48492 * 109.47154 * 29.72402 * 8 6 4 11 11 H 1.48500 * 109.46809 * 149.72519 * 8 6 4 12 12 N 1.46504 * 109.47324 * 239.99891 * 2 1 3 13 13 C 1.46501 * 119.99689 * 300.00204 * 12 2 1 14 14 C 1.34776 * 120.00010 * 119.99854 * 12 2 1 15 15 O 1.21281 * 119.99660 * 185.84588 * 14 12 2 16 16 C 1.50699 * 120.00211 * 5.84240 * 14 12 2 17 17 H 1.09000 * 110.26894 * 49.52371 * 16 14 12 18 18 C 1.54591 * 110.30722 * 287.33255 * 16 14 12 19 19 C 1.54942 * 102.91646 * 219.12765 * 18 16 14 20 20 N 1.48524 * 103.23033 * 37.41263 * 19 18 16 21 21 C 1.46898 * 111.00234 * 200.28093 * 20 19 18 22 22 C 1.52995 * 109.47166 * 287.39665 * 21 20 19 23 23 F 1.39903 * 109.47407 * 59.99645 * 22 21 20 24 24 F 1.39906 * 109.47279 * 180.02562 * 22 21 20 25 25 F 1.39901 * 109.47019 * 299.99974 * 22 21 20 26 26 C 1.47906 * 105.82153 * 320.79612 * 20 19 18 27 27 H 1.09000 * 109.47168 * 294.65084 * 1 2 3 28 28 H 1.09005 * 109.47164 * 54.64721 * 1 2 3 29 29 H 1.08994 * 109.47386 * 174.64978 * 1 2 3 30 30 H 0.97001 * 120.00127 * 355.18257 * 7 6 4 31 31 H 1.09005 * 109.47060 * 94.80443 * 13 12 2 32 32 H 1.08992 * 109.47029 * 214.80845 * 13 12 2 33 33 H 1.09007 * 109.47019 * 334.80700 * 13 12 2 34 34 H 1.08995 * 110.72792 * 337.47885 * 18 16 14 35 35 H 1.08999 * 110.72520 * 100.76961 * 18 16 14 36 36 H 1.09008 * 110.66449 * 278.97505 * 19 18 16 37 37 H 1.08998 * 110.81154 * 155.92028 * 19 18 16 38 38 H 1.09004 * 109.46914 * 47.39436 * 21 20 19 39 39 H 1.09001 * 109.47379 * 167.39699 * 21 20 19 40 40 H 1.09005 * 109.91421 * 265.97568 * 26 20 19 41 41 H 1.08993 * 109.91911 * 144.68549 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5819 -1.6349 1.1336 6 6 1.7902 -0.1799 2.4799 7 7 1.9368 -0.9279 3.5515 8 14 1.2465 1.5992 2.6498 9 1 2.4408 2.4703 2.7910 10 1 0.4811 2.0004 1.4423 11 1 0.3856 1.7410 3.8515 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.1098 -0.5721 -3.1240 16 6 3.2660 1.3632 -1.7823 17 1 3.7001 1.4084 -0.7835 18 6 2.0943 2.3640 -1.9062 19 6 2.7593 3.5954 -2.5711 20 7 3.7183 2.9880 -3.5289 21 6 4.7661 3.9468 -3.9041 22 6 4.1751 5.0116 -4.8302 23 9 3.1427 5.6845 -4.1681 24 9 5.1732 5.9244 -5.1881 25 9 3.6692 4.3992 -5.9818 26 6 4.2956 1.8171 -2.8336 27 1 -0.3633 0.4286 0.9340 28 1 -0.3634 0.5946 -0.8382 29 1 -0.3634 -1.0231 -0.0958 30 1 2.1469 -1.8704 3.4601 31 1 0.7856 -2.1447 -2.0708 32 1 2.4980 -2.6033 -1.9105 33 1 1.4461 -2.5751 -0.4749 34 1 1.3075 1.9598 -2.5431 35 1 1.7015 2.6217 -0.9226 36 1 3.2851 4.1962 -1.8289 37 1 2.0192 4.1980 -3.0976 38 1 5.1602 4.4239 -3.0068 39 1 5.5705 3.4225 -4.4200 40 1 5.2275 2.0987 -2.3433 41 1 4.4766 1.0135 -3.5474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349547414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:33 Heat of formation + Delta-G solvation = -179.244362 kcal Electronic energy + Delta-G solvation = -27064.354656 eV Core-core repulsion = 22757.461233 eV Total energy + Delta-G solvation = -4306.893423 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.18990 -47.76379 -47.60805 -40.11909 -38.08279 -35.80850 -33.09895 -32.71185 -30.00809 -29.15174 -28.56853 -26.25327 -24.91147 -23.33630 -22.10625 -21.42087 -20.88821 -18.69026 -18.56712 -18.15823 -17.79857 -17.56822 -16.82707 -15.90295 -15.18681 -14.90336 -14.71432 -14.57435 -14.44289 -14.24849 -14.10943 -13.97631 -13.81822 -13.77880 -13.42463 -13.05117 -12.79219 -12.58871 -12.33042 -12.18017 -11.88270 -11.80569 -11.51743 -11.48373 -11.42510 -11.25177 -11.08568 -10.75575 -10.63796 -10.20970 -9.85739 -9.23690 -9.18125 -8.73982 -8.52821 -7.88083 -6.63013 -4.31205 2.56086 3.17318 3.21891 3.24256 3.38004 3.40757 3.67149 3.77008 3.89046 4.28809 4.29672 4.50281 4.69273 4.88730 4.99176 5.03289 5.04503 5.17311 5.39105 5.46341 5.65155 5.83190 5.86892 6.03304 6.04700 6.07609 6.14239 6.17067 6.31526 6.38948 6.45100 6.56420 6.61295 6.70722 6.90122 7.31006 7.70541 8.13233 8.24591 8.66152 8.83828 9.38687 10.72194 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.004129 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.355444 B = 6779.536416 C = 7588.195424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.229 3.771 3 H 0.048 0.952 4 C -0.617 4.617 5 H 0.063 0.937 6 C 0.039 3.961 7 N -0.897 5.897 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.268 1.268 11 H -0.282 1.282 12 N -0.584 5.584 13 C 0.097 3.903 14 C 0.519 3.481 15 O -0.564 6.564 16 C -0.119 4.119 17 H 0.108 0.892 18 C -0.110 4.110 19 C 0.024 3.976 20 N -0.509 5.509 21 C 0.000 4.000 22 C 0.459 3.541 23 F -0.183 7.183 24 F -0.187 7.187 25 F -0.173 7.173 26 C 0.051 3.949 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.049 0.951 30 H 0.271 0.729 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.053 0.947 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 11.012 -11.845 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.127 3.873 3 H 0.065 0.935 4 C -0.655 4.655 5 H 0.082 0.918 6 C -0.168 4.168 7 N -0.530 5.530 8 Si 0.860 3.140 9 H -0.210 1.210 10 H -0.194 1.194 11 H -0.207 1.207 12 N -0.314 5.314 13 C -0.046 4.046 14 C 0.306 3.694 15 O -0.445 6.445 16 C -0.141 4.141 17 H 0.126 0.874 18 C -0.149 4.149 19 C -0.103 4.103 20 N -0.233 5.233 21 C -0.131 4.131 22 C 0.404 3.596 23 F -0.165 7.165 24 F -0.169 7.169 25 F -0.155 7.155 26 C -0.076 4.076 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.138 0.862 40 H 0.071 0.929 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.681 11.733 -11.732 16.807 hybrid contribution 0.683 -0.836 -0.272 1.113 sum 3.364 10.897 -12.004 16.558 Atomic orbital electron populations 1.22469 0.98477 1.00711 0.99894 1.19431 0.90933 0.93637 0.83312 0.93492 1.22217 1.40602 1.11900 0.90817 0.91844 1.25672 0.94075 1.05293 0.91795 1.70788 1.43004 1.08231 1.30942 0.84275 0.77500 0.75659 0.76593 1.20962 1.19388 1.20723 1.47915 1.48754 1.11793 1.22923 1.21409 0.99360 0.82391 1.01458 1.20137 0.78573 0.87411 0.83238 1.90592 1.59251 1.69124 1.25507 1.22088 0.97214 0.93840 1.00953 0.87375 1.22563 0.97036 0.93525 1.01753 1.23615 0.95939 0.96926 0.93844 1.64750 1.13045 1.05727 1.39802 1.23402 0.96292 0.93990 0.99407 1.20450 0.76190 0.82048 0.80896 1.93162 1.60619 1.82221 1.80476 1.93179 1.61455 1.69528 1.92704 1.93211 1.87828 1.82630 1.51787 1.22893 0.95283 0.93208 0.96248 0.92136 0.95310 0.93186 0.91869 0.94090 0.92407 0.90310 0.90087 0.89381 0.92705 0.88776 0.89901 0.86244 0.92863 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.58 37.15 0.32 -2.75 16 2 C 0.23 4.80 1.77 -69.09 -0.12 4.67 16 3 H 0.05 0.94 2.80 -51.93 -0.15 0.79 16 4 C -0.62 -15.46 8.33 -34.44 -0.29 -15.74 16 5 H 0.06 1.76 7.47 -52.49 -0.39 1.37 16 6 C 0.04 1.00 5.32 -17.82 -0.09 0.91 16 7 N -0.90 -25.42 13.70 55.43 0.76 -24.66 16 8 Si 1.03 22.09 26.18 -169.99 -4.45 17.64 16 9 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 10 H -0.27 -5.04 5.54 56.52 0.31 -4.73 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.58 -11.75 2.75 -175.26 -0.48 -12.24 16 13 C 0.10 1.82 9.17 59.85 0.55 2.37 16 14 C 0.52 10.05 6.84 -10.99 -0.08 9.98 16 15 O -0.56 -12.06 15.00 5.56 0.08 -11.98 16 16 C -0.12 -1.89 2.41 -90.42 -0.22 -2.10 16 17 H 0.11 1.73 7.53 -51.93 -0.39 1.34 16 18 C -0.11 -1.57 5.65 -24.87 -0.14 -1.71 16 19 C 0.02 0.29 5.41 -1.90 -0.01 0.28 16 20 N -0.51 -6.39 5.17 -230.46 -1.19 -7.59 16 21 C 0.00 0.00 4.83 -3.83 -0.02 -0.02 16 22 C 0.46 4.89 3.28 37.15 0.12 5.01 16 23 F -0.18 -2.08 14.67 2.25 0.03 -2.04 16 24 F -0.19 -1.93 17.32 2.25 0.04 -1.89 16 25 F -0.17 -2.16 17.24 2.25 0.04 -2.12 16 26 C 0.05 0.69 6.25 -2.75 -0.02 0.67 16 27 H 0.06 1.20 5.06 -51.93 -0.26 0.94 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 30 H 0.27 7.70 8.73 -40.82 -0.36 7.35 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.07 7.66 -51.93 -0.40 0.67 16 33 H 0.08 1.53 7.00 -51.93 -0.36 1.16 16 34 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 35 H 0.09 1.22 6.92 -51.93 -0.36 0.86 16 36 H 0.05 0.59 7.81 -51.92 -0.41 0.18 16 37 H 0.09 1.10 6.73 -51.93 -0.35 0.75 16 38 H 0.08 0.66 7.83 -51.93 -0.41 0.25 16 39 H 0.12 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.05 0.61 7.77 -51.93 -0.40 0.20 16 41 H 0.11 1.72 6.47 -51.93 -0.34 1.39 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -29.01 329.14 -5.72 -34.73 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.52 Total: 3.62 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 0.01 Total: 1.56 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.91 Total: -44.48 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.11 Total: -6.06 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.45 Total: 17.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.01 -5.72 -34.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349547414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.513 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds