Wall clock time and date at job start Tue Mar 31 2020 10:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.47002 * 2 1 4 4 C 1.42901 * 113.99608 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46662 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47231 * 55.00576 * 5 4 3 7 7 O 1.42895 * 109.47737 * 295.00419 * 5 4 3 8 8 C 1.53006 * 109.46848 * 175.00198 * 5 4 3 9 9 N 1.46500 * 109.46790 * 185.00219 * 8 5 4 10 10 C 1.34783 * 119.99908 * 179.97438 * 9 8 5 11 11 O 1.21587 * 119.99490 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00170 * 180.02562 * 10 9 8 13 13 C 1.39238 * 120.00100 * 174.85824 * 12 10 9 14 14 C 1.39482 * 119.83786 * 145.76191 * 13 12 10 15 15 C 1.36373 * 120.17249 * 180.20838 * 14 13 12 16 16 C 1.40873 * 119.82567 * 359.52406 * 15 14 13 17 17 C 1.41153 * 120.16599 * 180.27555 * 16 15 14 18 18 H 1.08000 * 120.00447 * 154.63964 * 17 16 15 19 19 C 1.39898 * 119.99732 * 334.64496 * 17 16 15 20 20 N 1.30879 * 119.99995 * 343.15774 * 19 17 16 21 21 Si 1.86800 * 120.00096 * 163.16031 * 19 17 16 22 22 H 1.48497 * 109.47205 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47024 * 119.99683 * 21 19 17 24 24 H 1.48491 * 109.47256 * 239.99695 * 21 19 17 25 25 C 1.40871 * 119.67072 * 0.25171 * 16 15 14 26 26 C 1.36369 * 119.83067 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.46978 * 60.00113 * 1 2 3 28 28 H 1.08999 * 109.47518 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47368 * 300.00699 * 1 2 3 30 30 H 1.09000 * 109.47004 * 239.99955 * 2 1 3 31 31 H 1.09002 * 109.46978 * 119.99887 * 2 1 3 32 32 H 1.09005 * 109.47159 * 60.00529 * 4 3 2 33 33 H 1.08993 * 109.47403 * 300.00290 * 4 3 2 34 34 H 0.96710 * 113.99598 * 300.00280 * 7 5 4 35 35 H 1.08994 * 109.46940 * 65.00105 * 8 5 4 36 36 H 1.09000 * 109.46688 * 305.00024 * 8 5 4 37 37 H 0.96993 * 120.00293 * 0.02562 * 9 8 5 38 38 H 0.97007 * 120.00259 * 354.84727 * 12 10 9 39 39 H 1.08003 * 119.91303 * 0.02562 * 14 13 12 40 40 H 1.07990 * 120.08956 * 179.80021 * 15 14 13 41 41 H 0.97002 * 120.00427 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.08148 * 180.02562 * 25 16 15 43 43 H 1.08002 * 119.91569 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 1 3.3492 3.4419 0.8413 7 8 3.3986 3.5448 -1.2216 8 6 5.3453 3.0607 0.1262 9 7 5.7132 4.4737 0.2456 10 6 7.0086 4.8246 0.3697 11 8 7.8718 3.9684 0.3819 12 7 7.3471 6.1244 0.4801 13 6 8.6722 6.4812 0.7154 14 6 9.1848 7.6530 0.1588 15 6 10.4829 8.0068 0.3814 16 6 11.3038 7.1905 1.1841 17 6 12.6468 7.5529 1.4239 18 1 13.1495 7.2044 2.3140 19 6 13.3266 8.3637 0.5087 20 7 12.8581 8.5170 -0.7037 21 14 14.9029 9.2275 1.0171 22 1 15.2175 8.8927 2.4292 23 1 16.0168 8.7797 0.1428 24 1 14.7281 10.6959 0.8831 25 6 10.7776 6.0111 1.7467 26 6 9.4789 5.6680 1.5113 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9767 0.8907 34 1 3.7837 3.1463 -2.0141 35 1 5.8187 2.6354 -0.7587 36 1 5.6807 2.5217 1.0122 37 1 5.0245 5.1566 0.2362 38 1 6.6675 6.8115 0.3954 39 1 8.5528 8.2802 -0.4525 40 1 10.8792 8.9126 -0.0529 41 1 13.3297 9.0789 -1.3385 42 1 11.4009 5.3806 2.3634 43 1 9.0740 4.7642 1.9423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355977976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:58 Heat of formation + Delta-G solvation = -109.075315 kcal Electronic energy + Delta-G solvation = -24116.390769 eV Core-core repulsion = 20354.396844 eV Total energy + Delta-G solvation = -3761.993924 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.97872 -38.94751 -37.57914 -36.97672 -34.53712 -34.05599 -32.89445 -32.03573 -30.19917 -29.50146 -28.70570 -25.94919 -24.48222 -23.20004 -22.16253 -21.61518 -20.82107 -19.99876 -18.05659 -17.58762 -17.24274 -17.03143 -16.54991 -16.29803 -15.73298 -15.19777 -14.96032 -14.66519 -14.48778 -13.91421 -13.87400 -13.61305 -13.28216 -13.07320 -12.80109 -12.67268 -12.44068 -12.04994 -11.81923 -11.79463 -11.76253 -11.29278 -11.17920 -11.11464 -10.96573 -10.70601 -10.45654 -10.03816 -10.03221 -9.56200 -9.50347 -9.16408 -8.95897 -8.86116 -7.49838 -6.92063 -6.69704 -4.25544 2.67017 2.81195 3.09197 3.11783 3.14958 3.17192 3.38102 3.73233 3.96148 4.05471 4.45583 4.53053 4.60169 4.66020 4.67640 4.76390 4.84559 4.95571 5.01756 5.10232 5.29360 5.48803 5.50145 5.69798 5.72660 5.73843 6.23838 6.44127 6.54589 6.76325 6.81769 6.85125 7.08203 7.15948 7.29661 7.31892 7.41100 7.65301 7.91045 8.01346 8.09180 8.32460 8.52137 8.64479 8.92808 8.95563 9.14318 10.22132 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.055889 B = 0.001959 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.871268 B =14288.156527 C =14523.307205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.379 6.379 4 C 0.034 3.966 5 C 0.100 3.900 6 H 0.113 0.887 7 O -0.550 6.550 8 C 0.114 3.886 9 N -0.747 5.747 10 C 0.694 3.306 11 O -0.580 6.580 12 N -0.665 5.665 13 C 0.013 3.987 14 C -0.116 4.116 15 C -0.152 4.152 16 C 0.103 3.897 17 C -0.459 4.459 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.795 5.795 21 Si 0.908 3.092 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.272 1.272 25 C -0.214 4.214 26 C -0.077 4.077 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.376 0.624 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.397 0.603 38 H 0.392 0.608 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.279 0.721 42 H 0.094 0.906 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.560 -10.612 -0.372 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.299 6.299 4 C -0.044 4.044 5 C 0.040 3.960 6 H 0.131 0.869 7 O -0.355 6.355 8 C -0.012 4.012 9 N -0.405 5.405 10 C 0.395 3.605 11 O -0.457 6.457 12 N -0.311 5.311 13 C -0.080 4.080 14 C -0.136 4.136 15 C -0.172 4.172 16 C 0.100 3.900 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.420 5.420 21 Si 0.732 3.268 22 H -0.184 1.184 23 H -0.201 1.201 24 H -0.198 1.198 25 C -0.234 4.234 26 C -0.097 4.097 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.224 0.776 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.231 0.769 38 H 0.225 0.775 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.168 -10.786 -0.165 21.995 hybrid contribution 0.598 0.306 -0.394 0.778 sum -18.571 -10.481 -0.559 21.331 Atomic orbital electron populations 1.21738 0.93604 1.02240 1.03279 1.22496 0.95765 0.83736 1.00112 1.87947 1.20152 1.26342 1.95423 1.23111 0.82423 0.97367 1.01504 1.22129 0.92739 0.91967 0.89152 0.86913 1.86629 1.72282 1.61288 1.15270 1.21635 0.93550 0.82952 1.03079 1.44891 1.06658 1.07806 1.81171 1.15996 0.82319 0.83714 0.78498 1.90924 1.48047 1.49316 1.57433 1.42096 1.09256 1.04977 1.74762 1.16963 0.83296 1.00219 1.07478 1.20208 0.96174 0.96736 1.00488 1.20877 0.91424 1.01136 1.03715 1.17665 0.93037 0.89355 0.89919 1.19572 0.96600 1.26379 1.06275 0.90384 1.25915 0.99422 0.94995 0.93994 1.69858 1.38368 1.30345 1.03477 0.86269 0.80987 0.79433 0.80064 1.18416 1.20061 1.19760 1.20643 0.95255 0.98629 1.08887 1.20246 0.94337 0.98111 0.97049 0.91759 0.91091 0.91797 0.93379 0.93354 0.92533 0.91915 0.77607 0.91227 0.90677 0.76883 0.77530 0.89204 0.86098 0.90985 0.88755 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.06 0.38 6.66 37.16 0.25 0.62 16 3 O -0.38 -3.52 10.31 -40.09 -0.41 -3.94 16 4 C 0.03 0.25 5.57 37.16 0.21 0.46 16 5 C 0.10 0.84 3.28 -26.73 -0.09 0.75 16 6 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 7 O -0.55 -5.11 13.25 -40.09 -0.53 -5.64 16 8 C 0.11 1.19 5.31 -4.04 -0.02 1.17 16 9 N -0.75 -9.51 5.51 -65.22 -0.36 -9.87 16 10 C 0.69 12.57 8.28 -86.92 -0.72 11.85 16 11 O -0.58 -13.06 14.07 5.29 0.07 -12.99 16 12 N -0.67 -12.10 5.31 -14.10 -0.07 -12.17 16 13 C 0.01 0.30 6.27 -83.57 -0.52 -0.22 16 14 C -0.12 -2.69 9.89 -39.79 -0.39 -3.09 16 15 C -0.15 -3.95 8.63 -39.26 -0.34 -4.29 16 16 C 0.10 2.80 5.57 -106.80 -0.59 2.21 16 17 C -0.46 -12.33 9.04 -37.86 -0.34 -12.67 16 18 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 19 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 20 N -0.79 -20.75 10.95 55.55 0.61 -20.15 16 21 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 C -0.21 -5.54 9.74 -39.26 -0.38 -5.92 16 26 C -0.08 -1.90 8.57 -39.79 -0.34 -2.24 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 2.42 9.05 45.56 0.41 2.83 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.40 4.13 8.49 -40.82 -0.35 3.78 16 38 H 0.39 5.62 8.83 -40.82 -0.36 5.26 16 39 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.12 3.22 6.18 -52.49 -0.32 2.89 16 41 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 42 H 0.09 2.32 8.06 -52.49 -0.42 1.89 16 43 H 0.10 2.45 6.47 -52.49 -0.34 2.11 16 LS Contribution 365.30 15.07 5.50 5.50 Total: -1.00 -33.25 365.30 -8.80 -42.05 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -5.58 Total: 13.52 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.00 Total: -10.08 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.17 Total: -42.18 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.87 Total: -22.57 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.25 -8.80 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355977976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.020 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds