Wall clock time and date at job start Tue Mar 31 2020 10:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47500 * 2 1 4 4 C 1.42904 * 114.00480 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47329 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47365 * 304.99737 * 5 4 3 7 7 O 1.42907 * 109.47363 * 64.99803 * 5 4 3 8 8 C 1.52998 * 109.47066 * 184.99769 * 5 4 3 9 9 N 1.46503 * 109.47442 * 180.02562 * 8 5 4 10 10 C 1.34778 * 120.00280 * 180.02562 * 9 8 5 11 11 O 1.21579 * 120.00038 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99536 * 179.97438 * 10 9 8 13 13 C 1.39243 * 119.99586 * 184.03010 * 12 10 9 14 14 C 1.39485 * 119.83383 * 324.49777 * 13 12 10 15 15 C 1.36377 * 120.16901 * 179.71425 * 14 13 12 16 16 C 1.40866 * 119.82458 * 0.56446 * 15 14 13 17 17 C 1.41155 * 120.16242 * 179.69846 * 16 15 14 18 18 H 1.08004 * 120.00283 * 214.79952 * 17 16 15 19 19 C 1.39899 * 120.00280 * 34.79344 * 17 16 15 20 20 N 1.30878 * 119.99752 * 355.56752 * 19 17 16 21 21 Si 1.86799 * 120.00178 * 175.55884 * 19 17 16 22 22 H 1.48501 * 109.46955 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46796 * 120.00517 * 21 19 17 24 24 H 1.48504 * 109.47211 * 240.00274 * 21 19 17 25 25 C 1.40866 * 119.67753 * 359.71216 * 16 15 14 26 26 C 1.36373 * 119.82585 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47236 * 300.00911 * 1 2 3 28 28 H 1.09007 * 109.46706 * 60.00114 * 1 2 3 29 29 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47593 * 239.99491 * 2 1 3 31 31 H 1.09004 * 109.47080 * 119.99515 * 2 1 3 32 32 H 1.08996 * 109.47280 * 59.99233 * 4 3 2 33 33 H 1.09005 * 109.46821 * 299.99770 * 4 3 2 34 34 H 0.96704 * 113.99920 * 59.99888 * 7 5 4 35 35 H 1.09001 * 109.47419 * 59.99903 * 8 5 4 36 36 H 1.09005 * 109.47281 * 299.99572 * 8 5 4 37 37 H 0.97001 * 119.99618 * 359.97438 * 9 8 5 38 38 H 0.97000 * 120.00820 * 4.31316 * 12 10 9 39 39 H 1.08001 * 119.91400 * 359.97438 * 14 13 12 40 40 H 1.07997 * 120.08619 * 180.27500 * 15 14 13 41 41 H 0.96997 * 119.99837 * 179.97438 * 20 19 17 42 42 H 1.07997 * 120.08930 * 179.97438 * 25 16 15 43 43 H 1.07997 * 119.91645 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9383 -0.0001 6 1 3.3501 3.4409 -0.8424 7 8 3.3976 3.5462 1.2204 8 6 5.3454 3.0604 -0.1252 9 7 5.7234 4.4758 -0.1252 10 6 7.0206 4.8270 -0.2269 11 8 7.8773 3.9692 -0.3182 12 7 7.3681 6.1292 -0.2275 13 6 8.6983 6.4946 -0.4167 14 6 9.7176 5.6990 0.1061 15 6 11.0229 6.0474 -0.0801 16 6 11.3402 7.2205 -0.7925 17 6 12.6886 7.5912 -0.9840 18 1 12.9660 8.6350 -0.9913 19 6 13.6660 6.6066 -1.1643 20 7 13.3454 5.3412 -1.0691 21 14 15.4284 7.0978 -1.5412 22 1 15.5287 8.5785 -1.5952 23 1 16.3250 6.5798 -0.4767 24 1 15.8325 6.5257 -2.8506 25 6 10.3051 8.0220 -1.3126 26 6 9.0047 7.6579 -1.1229 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8341 0.9763 -0.8890 33 1 3.8333 0.9767 0.8909 34 1 3.7820 3.1486 2.0137 35 1 5.6719 2.5968 -1.0561 36 1 5.8209 2.5579 0.7173 37 1 5.0398 5.1603 -0.0528 38 1 6.6922 6.8117 -0.0920 39 1 9.4727 4.8025 0.6563 40 1 11.8112 5.4280 0.3215 41 1 14.0230 4.6585 -1.1944 42 1 10.5407 8.9230 -1.8595 43 1 8.2099 8.2715 -1.5206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355977982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:02 Heat of formation + Delta-G solvation = -106.747505 kcal Electronic energy + Delta-G solvation = -24199.508845 eV Core-core repulsion = 20437.615863 eV Total energy + Delta-G solvation = -3761.892983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.99146 -38.94635 -37.58166 -36.96987 -34.49889 -34.05215 -32.82441 -32.03563 -30.20618 -29.42539 -28.72218 -25.93126 -24.46560 -23.19246 -22.13359 -21.45811 -20.99940 -19.94879 -18.01440 -17.60078 -17.22903 -17.03247 -16.53741 -16.28145 -15.75318 -15.17762 -14.91649 -14.62727 -14.49735 -13.94282 -13.83010 -13.57538 -13.29832 -13.05807 -12.79870 -12.65573 -12.45917 -12.04343 -11.79005 -11.75956 -11.68033 -11.40914 -11.17174 -11.13664 -10.86654 -10.47367 -10.44247 -10.02563 -9.94438 -9.84002 -9.56866 -9.08721 -8.90457 -8.70791 -7.46131 -6.81505 -6.54192 -4.27733 2.67936 2.83456 3.09742 3.13827 3.16696 3.20590 3.37897 3.72397 4.02794 4.06327 4.45678 4.53897 4.60946 4.66872 4.75297 4.78356 4.85013 4.96355 5.03098 5.10978 5.30016 5.49667 5.52377 5.69704 5.71416 5.73652 6.18734 6.41366 6.54109 6.77100 6.85428 6.88838 7.10120 7.20480 7.29518 7.33815 7.43895 7.70659 7.88687 8.07286 8.15119 8.35276 8.51590 8.73400 8.98600 8.99290 9.14576 10.36935 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.036243 B = 0.002084 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.371598 B =13430.286607 C =13975.776861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.379 6.379 4 C 0.034 3.966 5 C 0.100 3.900 6 H 0.113 0.887 7 O -0.550 6.550 8 C 0.113 3.887 9 N -0.747 5.747 10 C 0.694 3.306 11 O -0.576 6.576 12 N -0.667 5.667 13 C 0.025 3.975 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.097 3.903 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.068 3.932 20 N -0.809 5.809 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.203 4.203 26 C -0.116 4.116 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.376 0.624 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.392 0.608 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.277 0.723 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.116 -8.234 2.886 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.299 6.299 4 C -0.044 4.044 5 C 0.040 3.960 6 H 0.131 0.869 7 O -0.355 6.355 8 C -0.013 4.013 9 N -0.405 5.405 10 C 0.395 3.605 11 O -0.453 6.453 12 N -0.313 5.313 13 C -0.068 4.068 14 C -0.115 4.115 15 C -0.163 4.163 16 C 0.095 3.905 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.147 4.147 20 N -0.437 5.437 21 Si 0.739 3.261 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.223 4.223 26 C -0.137 4.137 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.225 0.775 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.679 -8.753 2.358 21.667 hybrid contribution 0.626 0.024 0.056 0.629 sum -19.054 -8.729 2.414 21.096 Atomic orbital electron populations 1.21737 0.93609 1.02238 1.03268 1.22494 0.95756 0.83740 1.00123 1.87943 1.20159 1.26347 1.95426 1.23110 0.82410 0.97369 1.01528 1.22131 0.92725 0.91961 0.89139 0.86919 1.86622 1.72284 1.61266 1.15306 1.21631 0.93478 0.82862 1.03323 1.44881 1.06656 1.07569 1.81379 1.15997 0.82318 0.83636 0.78538 1.90938 1.48414 1.49222 1.56685 1.42085 1.09038 1.05061 1.75154 1.17093 0.80971 0.99677 1.09029 1.20668 0.92569 0.98529 0.99695 1.21303 0.94431 0.99697 1.00838 1.17728 0.92831 0.91398 0.88578 1.19498 0.91752 0.94069 1.44155 0.90653 1.25885 1.00855 0.94592 0.93320 1.69805 1.35151 1.00616 1.38090 0.86169 0.81599 0.79764 0.78529 1.18643 1.20053 1.20064 1.20671 0.91982 1.02908 1.06697 1.20055 0.96266 0.97030 1.00348 0.91765 0.91801 0.91091 0.93347 0.93381 0.91901 0.92522 0.77620 0.90591 0.91255 0.76846 0.77539 0.87431 0.85201 0.91225 0.88558 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.38 -3.56 10.31 -40.08 -0.41 -3.97 16 4 C 0.03 0.26 5.57 37.15 0.21 0.46 16 5 C 0.10 0.85 3.33 -26.73 -0.09 0.76 16 6 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 7 O -0.55 -5.03 13.05 -40.08 -0.52 -5.55 16 8 C 0.11 1.19 5.34 -4.04 -0.02 1.17 16 9 N -0.75 -9.50 5.45 -65.22 -0.36 -9.86 16 10 C 0.69 12.61 8.39 -86.92 -0.73 11.88 16 11 O -0.58 -13.14 13.78 5.30 0.07 -13.07 16 12 N -0.67 -12.00 5.31 -14.10 -0.07 -12.07 16 13 C 0.02 0.56 6.30 -83.57 -0.53 0.04 16 14 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 15 C -0.14 -3.90 8.62 -39.26 -0.34 -4.23 16 16 C 0.10 2.65 5.55 -106.80 -0.59 2.05 16 17 C -0.46 -12.56 9.02 -37.85 -0.34 -12.90 16 18 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 19 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 20 N -0.81 -21.95 10.60 55.55 0.59 -21.36 16 21 Si 0.91 19.40 29.56 -169.99 -5.03 14.37 16 22 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 C -0.20 -4.96 9.74 -39.26 -0.38 -5.35 16 26 C -0.12 -2.59 9.90 -39.79 -0.39 -2.98 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.38 2.38 9.05 45.56 0.41 2.79 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 4.12 8.37 -40.82 -0.34 3.78 16 38 H 0.39 5.47 8.83 -40.82 -0.36 5.11 16 39 H 0.11 2.77 6.25 -52.49 -0.33 2.44 16 40 H 0.13 3.71 6.13 -52.49 -0.32 3.39 16 41 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 42 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -33.56 364.41 -8.81 -42.37 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -5.56 Total: 13.68 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -3.02 Total: -10.03 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.16 Total: -43.29 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.86 Total: -22.59 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.56 -8.81 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355977982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.377 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds