Wall clock time and date at job start Tue Mar 31 2020 09:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46706 * 2 1 4 4 C 1.50692 * 109.47051 * 239.99608 * 2 1 3 5 5 O 1.21287 * 120.00591 * 277.60865 * 4 2 1 6 6 N 1.34779 * 119.99939 * 97.61393 * 4 2 1 7 7 C 1.46507 * 120.00063 * 184.32935 * 6 4 2 8 8 C 1.53002 * 109.46974 * 184.88975 * 7 6 4 9 9 C 1.50694 * 115.55270 * 65.04582 * 8 7 6 10 10 H 1.08004 * 120.00042 * 268.41561 * 9 8 7 11 11 C 1.37878 * 119.99918 * 88.40944 * 9 8 7 12 12 N 1.31516 * 120.00231 * 3.08145 * 11 9 8 13 13 Si 1.86803 * 119.99834 * 183.07426 * 11 9 8 14 14 H 1.48500 * 109.47279 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46740 * 120.00712 * 13 11 9 16 16 H 1.48499 * 109.47306 * 240.00533 * 13 11 9 17 17 C 1.53001 * 117.49544 * 279.37654 * 8 7 6 18 18 C 1.52997 * 117.49506 * 210.71687 * 8 7 6 19 19 N 1.46903 * 109.46753 * 119.99948 * 2 1 3 20 20 C 1.46905 * 110.99588 * 172.21098 * 19 2 1 21 21 C 1.46903 * 110.99859 * 296.16275 * 19 2 1 22 22 C 1.52996 * 109.46886 * 140.84633 * 21 19 2 23 23 F 1.39902 * 109.47472 * 56.15206 * 22 21 19 24 24 F 1.39895 * 109.47114 * 296.14745 * 22 21 19 25 25 F 1.39907 * 109.46924 * 176.14816 * 22 21 19 26 26 H 1.09003 * 109.47160 * 49.46809 * 1 2 3 27 27 H 1.09003 * 109.47219 * 169.46672 * 1 2 3 28 28 H 1.09001 * 109.47313 * 289.46621 * 1 2 3 29 29 H 0.97002 * 120.00311 * 4.31779 * 6 4 2 30 30 H 1.08998 * 109.46567 * 304.88376 * 7 6 4 31 31 H 1.08997 * 109.47276 * 64.88425 * 7 6 4 32 32 H 0.96998 * 119.99742 * 174.99417 * 12 11 9 33 33 H 1.08999 * 117.50232 * 0.02562 * 17 8 7 34 34 H 1.08999 * 117.49882 * 145.02330 * 17 8 7 35 35 H 1.09000 * 117.49838 * 214.97581 * 18 8 7 36 36 H 1.09004 * 117.50143 * 359.97438 * 18 8 7 37 37 H 1.08999 * 109.46478 * 177.05725 * 20 19 2 38 38 H 1.08992 * 109.47267 * 297.05592 * 20 19 2 39 39 H 1.09004 * 109.47077 * 57.06156 * 20 19 2 40 40 H 1.09004 * 109.47247 * 20.84121 * 21 19 2 41 41 H 1.09004 * 109.46816 * 260.84520 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.1034 -1.9211 -1.2451 6 7 2.4027 -0.0005 -2.3144 7 6 2.8007 -0.6930 -3.5427 8 6 3.2867 0.3308 -4.5707 9 6 4.5408 1.0795 -4.1997 10 1 4.4723 2.0213 -3.6756 11 6 5.7755 0.5621 -4.5294 12 7 5.8577 -0.5539 -5.2204 13 14 7.3317 1.4463 -3.9947 14 1 6.9697 2.6696 -3.2346 15 1 8.1394 0.5481 -3.1309 16 1 8.1232 1.8239 -5.1931 17 6 2.2244 1.0855 -5.3726 18 6 3.0703 0.0040 -6.0496 19 7 2.0196 -0.6925 1.1995 20 6 3.4762 -0.8752 1.1441 21 6 1.6249 0.0246 2.4193 22 6 1.2318 -0.9849 3.4997 23 9 2.2917 -1.8718 3.7171 24 9 0.1040 -1.6994 3.0821 25 9 0.9404 -0.3064 4.6880 26 1 -0.3634 0.6679 -0.7811 27 1 -0.3634 -1.0104 -0.1879 28 1 -0.3634 0.3425 0.9689 29 1 2.4057 0.9690 -2.2816 30 1 3.6050 -1.3941 -3.3200 31 1 1.9465 -1.2362 -3.9466 32 1 6.7228 -0.8795 -5.5147 33 1 1.1794 0.8530 -5.1675 34 1 2.4329 2.1234 -5.6322 35 1 3.8348 0.3310 -6.7544 36 1 2.5821 -0.9404 -6.2902 37 1 3.8189 -1.3431 2.0670 38 1 3.7305 -1.5125 0.2974 39 1 3.9598 0.0947 1.0272 40 1 0.7759 0.6726 2.2013 41 1 2.4611 0.6279 2.7727 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357688980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:48 Heat of formation + Delta-G solvation = -160.452254 kcal Electronic energy + Delta-G solvation = -26495.391993 eV Core-core repulsion = 22189.313457 eV Total energy + Delta-G solvation = -4306.078536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.08890 -47.65214 -47.52254 -39.82806 -37.45972 -36.48164 -33.40273 -32.01089 -31.59036 -29.76743 -26.69019 -25.40136 -25.13593 -23.77181 -21.88197 -21.16756 -19.76377 -19.25068 -18.56584 -18.42832 -17.78418 -16.72365 -16.33870 -15.91182 -15.31648 -14.78399 -14.68988 -14.54189 -14.38035 -14.19610 -14.04258 -13.98722 -13.73869 -13.71884 -13.57837 -13.19205 -12.95998 -12.62889 -12.39945 -12.02482 -12.01877 -11.70888 -11.62439 -11.46739 -11.33414 -11.05892 -10.96820 -10.58317 -10.28636 -9.65459 -9.32454 -9.10343 -8.69770 -8.52652 -8.36682 -8.14347 -6.12465 -4.22848 2.54631 3.00579 3.20068 3.29598 3.30396 3.32514 3.74915 3.81705 3.94653 4.30017 4.32981 4.75801 4.78833 4.89861 4.98875 5.11940 5.14544 5.30241 5.38095 5.45854 5.56005 5.66127 5.97644 6.06995 6.09325 6.28090 6.40548 6.46879 6.55467 6.61496 6.64883 6.79799 7.07801 7.19006 7.34942 7.50106 7.75387 8.17911 8.27764 8.76382 8.79363 9.44680 10.94503 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.003582 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.101107 B = 7815.588530 C = 8628.698182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.064 0.936 4 C 0.509 3.491 5 O -0.533 6.533 6 N -0.702 5.702 7 C 0.163 3.837 8 C 0.022 3.978 9 C -0.498 4.498 10 H 0.059 0.941 11 C 0.073 3.927 12 N -0.874 5.874 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.212 4.212 18 C -0.139 4.139 19 N -0.515 5.515 20 C 0.011 3.989 21 C 0.001 3.999 22 C 0.459 3.541 23 F -0.180 7.180 24 F -0.176 7.176 25 F -0.190 7.190 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.399 0.601 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.261 0.739 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.035 0.965 40 H 0.117 0.883 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 3.914 13.815 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 H 0.082 0.918 4 C 0.293 3.707 5 O -0.410 6.410 6 N -0.351 5.351 7 C 0.041 3.959 8 C 0.021 3.979 9 C -0.536 4.536 10 H 0.077 0.923 11 C -0.131 4.131 12 N -0.510 5.510 13 Si 0.717 3.283 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.250 4.250 18 C -0.177 4.177 19 N -0.239 5.239 20 C -0.136 4.136 21 C -0.130 4.130 22 C 0.404 3.596 23 F -0.162 7.162 24 F -0.157 7.157 25 F -0.172 7.172 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.232 0.768 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.053 0.947 40 H 0.135 0.865 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.290 2.364 13.753 16.764 hybrid contribution 1.319 1.498 0.344 2.025 sum -7.971 3.861 14.098 16.649 Atomic orbital electron populations 1.21844 0.91725 1.04076 1.02311 1.21737 0.97582 0.96060 0.89050 0.91774 1.20051 0.78557 0.88065 0.84061 1.90697 1.53965 1.13762 1.82558 1.46020 1.65785 1.10427 1.12874 1.21039 0.97261 0.94748 0.82902 1.19052 0.93844 0.95739 0.89238 1.20355 0.88682 1.05830 1.38714 0.92274 1.24983 0.98897 0.94470 0.94732 1.69998 1.24766 1.20302 1.35918 0.86595 0.83496 0.79635 0.78601 1.19794 1.20938 1.20962 1.23050 0.94867 0.97182 1.09877 1.22439 1.00741 0.96501 0.98002 1.61433 1.15007 1.48070 0.99401 1.22753 0.84608 1.01339 1.04914 1.23303 1.05056 0.93652 0.90950 1.20536 0.75129 0.82012 0.81899 1.93165 1.56831 1.70956 1.95225 1.93193 1.52608 1.80011 1.89889 1.93170 1.93661 1.80003 1.50317 0.91109 0.90651 0.91643 0.76753 0.91103 0.94492 0.92886 0.91753 0.90388 0.89384 0.91831 0.90455 0.88980 0.94661 0.86461 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.27 37.16 0.34 -1.17 16 2 C 0.07 0.85 2.41 -68.87 -0.17 0.68 16 3 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 4 C 0.51 8.79 5.63 -10.99 -0.06 8.73 16 5 O -0.53 -11.39 15.64 5.55 0.09 -11.30 16 6 N -0.70 -12.52 5.46 -60.29 -0.33 -12.85 16 7 C 0.16 3.51 5.52 -4.04 -0.02 3.49 16 8 C 0.02 0.49 1.50 -155.66 -0.23 0.26 16 9 C -0.50 -12.37 8.73 -34.44 -0.30 -12.67 16 10 H 0.06 1.44 7.82 -52.48 -0.41 1.03 16 11 C 0.07 1.89 5.42 -17.82 -0.10 1.80 16 12 N -0.87 -23.72 12.44 55.43 0.69 -23.03 16 13 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 C -0.21 -4.22 9.96 -26.69 -0.27 -4.48 16 18 C -0.14 -3.09 9.00 -26.69 -0.24 -3.33 16 19 N -0.51 -6.57 4.19 -236.28 -0.99 -7.56 16 20 C 0.01 0.15 8.70 60.07 0.52 0.67 16 21 C 0.00 0.01 4.92 -3.82 -0.02 -0.01 16 22 C 0.46 5.03 3.30 37.16 0.12 5.15 16 23 F -0.18 -2.26 15.72 2.25 0.04 -2.23 16 24 F -0.18 -2.20 17.29 2.25 0.04 -2.16 16 25 F -0.19 -1.95 17.32 2.25 0.04 -1.91 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 28 H 0.06 0.55 6.01 -51.93 -0.31 0.24 16 29 H 0.40 6.37 8.39 -40.82 -0.34 6.03 16 30 H 0.07 1.77 8.11 -51.93 -0.42 1.35 16 31 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.09 2.12 8.04 -51.93 -0.42 1.71 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 0.94 6.76 -51.93 -0.35 0.59 16 38 H 0.09 1.54 6.27 -51.93 -0.33 1.22 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.12 0.85 5.72 -51.93 -0.30 0.55 16 41 H 0.09 0.70 7.71 -51.93 -0.40 0.30 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -29.30 351.37 -6.36 -35.66 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.79 Total: 5.90 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.42 Total: -0.88 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.63 Total: -43.45 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.11 Total: -6.30 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.30 -6.36 -35.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357688980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.795 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds