Wall clock time and date at job start Tue Mar 31 2020 09:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47560 * 2 1 4 4 C 1.50704 * 109.47176 * 239.99381 * 2 1 3 5 5 O 1.21279 * 119.99974 * 240.00023 * 4 2 1 6 6 N 1.34770 * 119.99638 * 60.00390 * 4 2 1 7 7 C 1.46500 * 119.99758 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47199 * 179.97438 * 7 6 4 9 9 H 1.09008 * 109.49275 * 55.06785 * 8 7 6 10 10 C 1.53037 * 109.50080 * 175.16223 * 8 7 6 11 11 C 1.53036 * 109.54151 * 181.32042 * 10 8 7 12 12 C 1.53198 * 109.31385 * 298.63707 * 11 10 8 13 13 N 1.46927 * 108.77458 * 54.63140 * 12 11 10 14 14 C 1.36933 * 120.62729 * 126.37198 * 13 12 11 15 15 H 1.07995 * 120.00360 * 331.84213 * 14 13 12 16 16 C 1.38819 * 119.99739 * 151.85097 * 14 13 12 17 17 N 1.31623 * 119.99970 * 343.06463 * 16 14 13 18 18 Si 1.86794 * 119.99864 * 163.07570 * 16 14 13 19 19 H 1.48497 * 109.47694 * 89.99739 * 18 16 14 20 20 H 1.48510 * 109.46848 * 209.99347 * 18 16 14 21 21 H 1.48500 * 109.47254 * 329.99241 * 18 16 14 22 22 C 1.46923 * 118.74018 * 306.39332 * 13 12 11 23 23 C 1.53005 * 109.47168 * 119.99911 * 2 1 3 24 24 F 1.39901 * 109.47432 * 180.02562 * 23 2 1 25 25 F 1.39904 * 109.46858 * 299.99856 * 23 2 1 26 26 F 1.39904 * 109.47423 * 59.99447 * 23 2 1 27 27 H 1.08997 * 109.46853 * 300.00358 * 1 2 3 28 28 H 1.08996 * 109.46675 * 60.00587 * 1 2 3 29 29 H 1.09004 * 109.47003 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00327 * 359.97438 * 6 4 2 31 31 H 1.09000 * 109.47072 * 60.00518 * 7 6 4 32 32 H 1.09000 * 109.47515 * 299.99878 * 7 6 4 33 33 H 1.08999 * 109.46434 * 301.34251 * 10 8 7 34 34 H 1.09004 * 109.45620 * 61.29892 * 10 8 7 35 35 H 1.09003 * 109.50055 * 178.68845 * 11 10 8 36 36 H 1.08996 * 109.52491 * 58.60222 * 11 10 8 37 37 H 1.09004 * 109.58230 * 294.85001 * 12 11 10 38 38 H 1.08994 * 109.70725 * 174.49235 * 12 11 10 39 39 H 0.96992 * 119.99813 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.59070 * 293.82207 * 22 13 12 41 41 H 1.08998 * 109.58578 * 173.39376 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1956 -0.9405 -3.6506 8 6 1.6851 -0.2198 -4.8999 9 1 1.9735 0.8306 -4.8573 10 6 2.2922 -0.8667 -6.1469 11 6 1.8080 -0.1258 -7.3953 12 6 0.2826 -0.2334 -7.4887 13 7 -0.3036 0.2536 -6.2325 14 6 -1.2619 1.2316 -6.2429 15 1 -1.2847 1.9569 -7.0427 16 6 -2.2041 1.2909 -5.2251 17 7 -2.3977 0.2480 -4.4459 18 14 -3.1973 2.8509 -4.9617 19 1 -4.4405 2.7889 -5.7714 20 1 -3.5486 2.9771 -3.5242 21 1 -2.3924 4.0267 -5.3796 22 6 0.1583 -0.3285 -4.9650 23 6 2.0400 -0.7213 1.2493 24 9 3.4390 -0.7208 1.2496 25 9 1.5737 -0.0617 2.3916 26 9 1.5736 -2.0403 1.2494 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.1489 0.5383 -2.5436 31 1 1.8326 -1.9683 -3.6507 32 1 3.2856 -0.9402 -3.6505 33 1 3.3794 -0.8126 -6.0913 34 1 1.9831 -1.9106 -6.2014 35 1 2.2591 -0.5724 -8.2814 36 1 2.0953 0.9237 -7.3304 37 1 -0.0013 -1.2741 -7.6451 38 1 -0.0784 0.3727 -8.3195 39 1 -3.0562 0.2893 -3.7350 40 1 -0.1357 -1.3769 -4.9157 41 1 -0.2827 0.2166 -4.1304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359404091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:45 Heat of formation + Delta-G solvation = -188.058539 kcal Electronic energy + Delta-G solvation = -26891.671277 eV Core-core repulsion = 22584.395643 eV Total energy + Delta-G solvation = -4307.275634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.08720 -47.61194 -47.48535 -39.85113 -37.86290 -34.81475 -34.15023 -33.07787 -30.86408 -29.86963 -26.49346 -25.84813 -25.34189 -23.26130 -22.18394 -20.94383 -20.35157 -19.17830 -18.65942 -18.43698 -17.62530 -16.90438 -16.51655 -15.64320 -15.36171 -14.91227 -14.54770 -14.38228 -14.13419 -13.97173 -13.94447 -13.70065 -13.66983 -13.63621 -13.39895 -13.19111 -12.96851 -12.64403 -12.38194 -12.26336 -12.24638 -11.95826 -11.51312 -11.29380 -11.09334 -10.78816 -10.57049 -10.31363 -10.27158 -10.03138 -9.92177 -9.63846 -9.52040 -8.90822 -8.57665 -6.75414 -5.88910 -3.31276 2.51094 2.56798 3.13601 3.28040 3.36491 3.38427 3.64202 3.98979 4.14486 4.39981 4.68018 4.74200 4.84813 5.07599 5.24487 5.41782 5.46519 5.49210 5.51747 5.52796 5.72448 5.88168 5.95390 6.02321 6.20658 6.23345 6.31571 6.43124 6.56610 6.57998 6.74118 6.78388 6.94675 7.20611 7.49618 7.52993 7.70043 8.16902 8.34510 9.11433 9.74468 10.32231 11.19072 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.004457 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.701977 B = 6280.144920 C = 7819.175020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.163 4.163 3 H 0.137 0.863 4 C 0.520 3.480 5 O -0.531 6.531 6 N -0.708 5.708 7 C 0.130 3.870 8 C -0.128 4.128 9 H 0.070 0.930 10 C -0.100 4.100 11 C -0.133 4.133 12 C 0.143 3.857 13 N -0.592 5.592 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.899 3.101 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.179 3.821 23 C 0.473 3.527 24 F -0.176 7.176 25 F -0.184 7.184 26 F -0.171 7.171 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.408 0.592 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.053 0.947 39 H 0.254 0.746 40 H 0.019 0.981 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 0.652 7.243 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 H 0.155 0.845 4 C 0.304 3.696 5 O -0.408 6.408 6 N -0.359 5.359 7 C 0.007 3.993 8 C -0.149 4.149 9 H 0.089 0.911 10 C -0.138 4.138 11 C -0.172 4.172 12 C 0.016 3.984 13 N -0.315 5.315 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.728 3.272 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.052 3.948 23 C 0.419 3.581 24 F -0.157 7.157 25 F -0.165 7.165 26 F -0.152 7.152 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.243 0.757 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.679 -0.091 7.447 11.436 hybrid contribution -0.782 1.090 0.339 1.383 sum 7.897 0.999 7.785 11.134 Atomic orbital electron populations 1.21876 0.88790 1.05106 1.05228 1.22651 1.01738 1.02832 0.91336 0.84499 1.19668 0.80822 0.84733 0.84385 1.90784 1.37766 1.25670 1.86561 1.45895 1.52767 1.32185 1.05078 1.21471 0.98146 0.96643 0.83057 1.22164 1.01360 0.99226 0.92156 0.91142 1.21331 0.98387 0.99419 0.94704 1.21984 0.98917 0.99952 0.96335 1.20939 0.90603 0.96784 0.90034 1.44031 1.43825 1.43988 0.99627 1.19193 1.05295 1.04053 1.09577 0.91725 1.25031 0.96944 0.97129 1.00494 1.70044 1.35567 1.27290 1.21726 0.86359 0.80249 0.83364 0.77189 1.21362 1.21513 1.20526 1.20808 0.86520 0.96972 0.90450 1.19799 0.75792 0.77951 0.84584 1.93203 1.29423 1.96377 1.96684 1.93174 1.88599 1.80893 1.53832 1.93207 1.88261 1.37122 1.96655 0.90144 0.88958 0.90378 0.75652 0.91381 0.92011 0.93355 0.92415 0.93026 0.92417 0.96478 0.92886 0.93641 0.96252 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.85 37.16 0.33 -1.32 16 2 C -0.16 -1.89 2.71 -91.77 -0.25 -2.14 16 3 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.52 7.69 6.92 -10.99 -0.08 7.62 16 5 O -0.53 -9.67 14.83 5.56 0.08 -9.58 16 6 N -0.71 -10.16 5.22 -60.29 -0.31 -10.47 16 7 C 0.13 2.00 5.07 -4.04 -0.02 1.98 16 8 C -0.13 -2.14 2.38 -90.50 -0.21 -2.36 16 9 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 10 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 11 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 12 C 0.14 2.84 6.52 -3.71 -0.02 2.81 16 13 N -0.59 -13.83 2.99 -172.32 -0.52 -14.34 16 14 C -0.25 -6.47 9.58 -15.06 -0.14 -6.62 16 15 H 0.07 1.65 7.88 -52.49 -0.41 1.24 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -24.07 11.20 55.49 0.62 -23.45 16 18 Si 0.90 20.21 29.59 -169.99 -5.03 15.18 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 22 C 0.18 3.80 4.39 -3.71 -0.02 3.79 16 23 C 0.47 6.19 2.42 37.16 0.09 6.28 16 24 F -0.18 -2.53 16.40 2.25 0.04 -2.49 16 25 F -0.18 -2.18 16.80 2.25 0.04 -2.14 16 26 F -0.17 -2.56 15.88 2.25 0.04 -2.53 16 27 H 0.08 0.73 7.80 -51.93 -0.41 0.32 16 28 H 0.09 1.02 7.56 -51.93 -0.39 0.63 16 29 H 0.08 0.93 7.80 -51.93 -0.41 0.53 16 30 H 0.41 5.48 7.11 -40.82 -0.29 5.19 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 39 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 1.99 5.26 -51.93 -0.27 1.72 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -29.47 340.31 -6.58 -36.06 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.95 Total: 2.62 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.71 Total: 6.02 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.21 Total: -48.26 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.11 Total: -7.16 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.47 -6.58 -36.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359404091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.002 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds